CsGy6G015545 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G015545
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionReverse transcriptase
LocationGy14Chr6: 14388016 .. 14388321 (-)
RNA-Seq ExpressionCsGy6G015545
SyntenyCsGy6G015545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGGAAGTGGCGGAATTCGTTAGTAAGTGTCTAGTATGTCAGCAGGTTAAGGCACCTAGACAGAAACCAACAGGTTTGTTACAACCTTTAAGTGTGTCAGAGTGGAAGTGGGAGAATGTGTCGATGGATTTTATTTCAGGGCTGCCTAAGACCCTGAAGGGTTTCAGAGTGATTTTGGTTGTCGTAGACAGGCTTACGAAATCGGCACATTTTGTACCAGGGAAATCCACTTATACTGCTAGTAAGTGGGCACAGTTGTATTTAACTGAGGTTGTGAGACTGCATGGAGTGCCTGTATAG

mRNA sequence

ATGAAAAGGGAAGTGGCGGAATTCGTTAGTAAGTGTCTAGTATGTCAGCAGGTTAAGGCACCTAGACAGAAACCAACAGGTTTGTTACAACCTTTAAGTGTGTCAGAGTGGAAGTGGGAGAATGTGTCGATGGATTTTATTTCAGGGCTGCCTAAGACCCTGAAGGGTTTCAGAGTGATTTTGGTTGTCGTAGACAGGCTTACGAAATCGGCACATTTTGTACCAGGGAAATCCACTTATACTGCTAGTAAGTGGGCACAGTTGTATTTAACTGAGGTTGTGAGACTGCATGGAGTGCCTGTATAG

Coding sequence (CDS)

ATGAAAAGGGAAGTGGCGGAATTCGTTAGTAAGTGTCTAGTATGTCAGCAGGTTAAGGCACCTAGACAGAAACCAACAGGTTTGTTACAACCTTTAAGTGTGTCAGAGTGGAAGTGGGAGAATGTGTCGATGGATTTTATTTCAGGGCTGCCTAAGACCCTGAAGGGTTTCAGAGTGATTTTGGTTGTCGTAGACAGGCTTACGAAATCGGCACATTTTGTACCAGGGAAATCCACTTATACTGCTAGTAAGTGGGCACAGTTGTATTTAACTGAGGTTGTGAGACTGCATGGAGTGCCTGTATAG

Protein sequence

MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV*
Homology
BLAST of CsGy6G015545 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-17
Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
            ++  + +++  C+ CQ +K+ R +  GLLQPL ++E +W ++SMDF++GLP T     +I
Sbjct: 1131 LQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMI 1190

Query: 61   LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP 101
            LVVVDR +K AHF+  + T  A++   L    +   HG P
Sbjct: 1191 LVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFP 1230

BLAST of CsGy6G015545 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-17
Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
            ++  + +++  C+ CQ +K+ R +  GLLQPL ++E +W ++SMDF++GLP T     +I
Sbjct: 1157 LQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMI 1216

Query: 61   LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP 101
            LVVVDR +K AHF+  + T  A++   L    +   HG P
Sbjct: 1217 LVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFP 1256

BLAST of CsGy6G015545 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-14
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 0

Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
            +++++ E+V  C  CQ  K+   KP G LQP+  SE  WE++SMDFI+ LP++  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP 101
             VVVDR +K A  VP   + TA + A+++   V+   G P
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044

BLAST of CsGy6G015545 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-14
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 0

Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
            +++++ E+V  C  CQ  K+   KP G LQP+  SE  WE++SMDFI+ LP++  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP 101
             VVVDR +K A  VP   + TA + A+++   V+   G P
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044

BLAST of CsGy6G015545 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-14
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 0

Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
            +++++ E+V  C  CQ  K+   KP G LQP+  SE  WE++SMDFI+ LP++  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP 101
             VVVDR +K A  VP   + TA + A+++   V+   G P
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044

BLAST of CsGy6G015545 vs. NCBI nr
Match: KAA0045454.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (483), Expect = 4.01e-59
Identity = 88/101 (87.13%), Postives = 96/101 (95.05%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVS+CLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+G  VI
Sbjct: 21  MKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGCTVI 80

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 81  CVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 121

BLAST of CsGy6G015545 vs. NCBI nr
Match: KAA0053361.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (493), Expect = 6.02e-59
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLSV EWKWENVSMDFI+GLP+TL+GF VI
Sbjct: 1   MKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 101

BLAST of CsGy6G015545 vs. NCBI nr
Match: KAA0032427.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (493), Expect = 8.72e-59
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLSV EWKWENVSMDFI+GLP+TL+GF VI
Sbjct: 1   MKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 101

BLAST of CsGy6G015545 vs. NCBI nr
Match: KAA0053631.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (493), Expect = 1.35e-58
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+GF VI
Sbjct: 21  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 80

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 81  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 121

BLAST of CsGy6G015545 vs. NCBI nr
Match: KAA0043401.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (493), Expect = 1.74e-58
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+GF VI
Sbjct: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 101

BLAST of CsGy6G015545 vs. ExPASy TrEMBL
Match: A0A5A7TQR2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1770G00110 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 1.94e-59
Identity = 88/101 (87.13%), Postives = 96/101 (95.05%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVS+CLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+G  VI
Sbjct: 21  MKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGCTVI 80

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 81  CVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 121

BLAST of CsGy6G015545 vs. ExPASy TrEMBL
Match: A0A5A7UIH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00150 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 2.92e-59
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLSV EWKWENVSMDFI+GLP+TL+GF VI
Sbjct: 1   MKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 101

BLAST of CsGy6G015545 vs. ExPASy TrEMBL
Match: A0A5A7SSN9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2492G00090 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 4.22e-59
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLSV EWKWENVSMDFI+GLP+TL+GF VI
Sbjct: 1   MKREVAEFVSKCLVCQQVKAPRQKPEGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 101

BLAST of CsGy6G015545 vs. ExPASy TrEMBL
Match: A0A5A7UJG5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31080G00010 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 6.55e-59
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+GF VI
Sbjct: 21  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 80

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 81  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 121

BLAST of CsGy6G015545 vs. ExPASy TrEMBL
Match: A0A5A7TPA9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 8.43e-59
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVI 60
           MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+GF VI
Sbjct: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 60

Query: 61  LVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV 101
            VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVPV
Sbjct: 61  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q993152.6e-1738.00Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG52.6e-1738.00Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q9UR072.1e-1439.00Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT412.1e-1439.00Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT342.1e-1439.00Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
KAA0045454.14.01e-5987.13pol protein [Cucumis melo var. makuwa][more]
KAA0053361.16.02e-5990.10ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0032427.18.72e-5990.10pol protein [Cucumis melo var. makuwa][more]
KAA0053631.11.35e-5889.11ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0043401.11.74e-5889.11pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7TQR21.94e-5987.13Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1770G00110 P... [more]
A0A5A7UIH12.92e-5990.10Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SSN94.22e-5990.10Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2492G00090 P... [more]
A0A5A7UJG56.55e-5989.11Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TPA98.43e-5989.11Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 29..101
e-value: 2.8E-11
score: 45.0
NoneNo IPR availablePANTHERPTHR45835YALI0A06105Pcoord: 5..100
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 32..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G015545.1CsGy6G015545.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity