CsGy6G008020 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G008020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein CURVATURE THYLAKOID 1B, chloroplastic
Location	Gy14Chr6: 6725934 .. 6727661 (+)
RNA-Seq Expression	CsGy6G008020
Synteny	CsGy6G008020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAGAGAGAGAAAAGAGAAGATATTTATCCATAAGCTAAGCATTGAGTGTGTTATTACAAAACCCTTTTATCCAATCAAACACTATCCATTTCAATCCTCTCTCATTTCCTCAACTCTCATAGCATTATCCAAATTGATTGTGAAATGAGTGGCTCTCTATCTTCATAACTTTAACACAATTTATATAACCCAACACACCAAAAACCATCTCCAAAAAAGGGAAATAAACCAAAACACATAAACACCTGTCTACAAAACAAAAGGAAAAAAACCCCAACACCAAAATCTTCACTTTCTTTCTTGCAGAAATTACCTTCTTCTTGTGTGTGAATATTTTGAGTGTGTGAGGCATTCATCAATGGCTTCTTCTTCTTCATCCACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCCCCTCGACAATCCGCTTCCCCGTCATCCACCGTCCCGCTCCCCACTCTCCCCTCACCCCCTACTCCCTTGTCCCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTGAGAATTCTATTATATATATATTAATATATCGTTTAAATTTAGCAGATCTTAAGTTAACTATATTGATTTTGTACGGATTATAGGTCGGAAGATTGCTCGCAATGTGATGGGGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCCGGGGAGCTGGCGGAGATGCCTGAAATTGTCAAAAAAGTTCAAGAAGCTGTATGCCAAATTTGTTTTTTTGAAAGACGAAAAAGAAAAGTTAATTACATTATTATTAATGGGTTGGATTTTGTTTTGGTTCAGTGGGATAAGGTTGAAGATAAGTATGCTGTGAGCTCACTTGCTGTCTCCGGCTTTGTGGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGTAAGCATTTTGATTCTGTATGAGTTGTAAATAAGTATAGTTGATCAAGAGCATAAAATAAGGGTCTTATATTAAATTTTGCAAAATTTGTACATTAATCTATTTTTATATATATCTGCAGGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGGTAAGTTTCTACATAATTTAATCCCAATTATATACTTCTAAATTTATAGCATACAATTTAGTTTAATGGCCATATTTGCATTTTGTGTATAATTATATGTGCAGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGTAATAAGTTCTAATAACACACCTTTTTTTTTTTTTTTTAATTAAACACCATGATTATATTATATTGAAGATGTTTATTTATTTATTATATTGTTGTTTGATTTTAAAAAAAAATACATTTTGATAAATTTTTATAGGGAAGCATTATTGCAGAAACTAAAGGAAACTTACAGTGAGATAATAGGGAGCAGCTAAAGAAGAGTATTGATGTTGTTGTGTGTGTTCAGAGAGGGGATTTAATTATTGAATAATAAAAAAAATATAATTAATTAATTGCTGTTTTTGCATTGCATTATTGCAACTATATTTGCATGAAAAAATTGTAACTCTTCTTTTTACCCACCCTTTTTTGTTCTCTTCATATATTATCTCTTATGTAATTGCCCTAACTGATCAATATCCCAATCTTTATGTGCTTTCCTTTTACTACCTAGCTACCTCTTATATTGCTCTCCAATTATTCCAATTTTACACAAACACTTTTTCAAGCCACC

mRNA sequence

AGAGAGAGAGAGAGAGAGAGAAAAGAGAAGATATTTATCCATAAGCTAAGCATTGAGTGTGTTATTACAAAACCCTTTTATCCAATCAAACACTATCCATTTCAATCCTCTCTCATTTCCTCAACTCTCATAGCATTATCCAAATTGATTGTGAAATGAGTGGCTCTCTATCTTCATAACTTTAACACAATTTATATAACCCAACACACCAAAAACCATCTCCAAAAAAGGGAAATAAACCAAAACACATAAACACCTGTCTACAAAACAAAAGGAAAAAAACCCCAACACCAAAATCTTCACTTTCTTTCTTGCAGAAATTACCTTCTTCTTGTGTGTGAATATTTTGAGTGTGTGAGGCATTCATCAATGGCTTCTTCTTCTTCATCCACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCCCCTCGACAATCCGCTTCCCCGTCATCCACCGTCCCGCTCCCCACTCTCCCCTCACCCCCTACTCCCTTGTCCCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTCGGAAGATTGCTCGCAATGTGATGGGGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCCGGGGAGCTGGCGGAGATGCCTGAAATTGTCAAAAAAGTTCAAGAAGCTGTATGCCAAATTTGTTTTTTTGAAAGACGAAAAAGAAAAGTTAATTACATTATTATTAATGGGTTGGATTTTGTTTTGGTTCAGTGGGATAAGGTTGAAGATAAGTATGCTGTGAGCTCACTTGCTGTCTCCGGCTTTGTGGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCATTATTGCAGAAACTAAAGGAAACTTACAGTGAGATAATAGGGAGCAGCTAAAGAAGAGTATTGATGTTGTTGTGTGTGTTCAGAGAGGGGATTTAATTATTGAATAATAAAAAAAATATAATTAATTAATTGCTGTTTTTGCATTGCATTATTGCAACTATATTTGCATGAAAAAATTGTAACTCTTCTTTTTACCCACCCTTTTTTGTTCTCTTCATATATTATCTCTTATGTAATTGCCCTAACTGATCAATATCCCAATCTTTATGTGCTTTCCTTTTACTACCTAGCTACCTCTTATATTGCTCTCCAATTATTCCAATTTTACACAAACACTTTTTCAAGCCACC

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCATCCACATTTGCTCTCTCTTCCTCCTCCACCCTCCTCGATTCTAAGGCCCCTCGACAATCCGCTTCCCCGTCATCCACCGTCCCGCTCCCCACTCTCCCCTCACCCCCTACTCCCTTGTCCCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTCGGAAGATTGCTCGCAATGTGATGGGGATGGCGACCGGAGAAGTCCCAGCTGAAGTGGCGGCCGGGGAGCTGGCGGAGATGCCTGAAATTGTCAAAAAAGTTCAAGAAGCTGTATGCCAAATTTGTTTTTTTGAAAGACGAAAAAGAAAAGTTAATTACATTATTATTAATGGGTTGGATTTTGTTTTGGTTCAGTGGGATAAGGTTGAAGATAAGTATGCTGTGAGCTCACTTGCTGTCTCCGGCTTTGTGGCCCTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCTGGCCTGCTTGAGCTTGTGGGAATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCATTATTGCAGAAACTAAAGGAAACTTACAGTGAGATAATAGGGAGCAGCTAA

Protein sequence

MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVLVQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS*

Homology

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BLAST of CsGy6G008020 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-45
Identity = 107/205 (52.20%), Postives = 131/205 (63.90%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQ----SHTRAAKATAYCRKIV 61

Query: 67  RNVMGMAT---GEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDF 126
           RNV+  AT   GE PA     E  E+PEIVK  QEA                        
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEA------------------------ 121

Query: 127 VLVQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKN 186
               W+KV+DKYA+ SLA +G VALW SAG++SAIDRLPLVPG+LELVGIGYTGWF YKN
Sbjct: 122 ----WEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKN 174

Query: 187 LIFRPDREALLQKLKETYSEIIGSS 204
           L+F+PDREAL +K+K TY +I+GSS
Sbjct: 182 LVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of CsGy6G008020 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 35/79 (44.30%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 123 WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFR 182
           WDK ED+  +  L  +G VALWAS  +++AID+LP++    ELVGI ++ WF Y+ L+F+
Sbjct: 77  WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFK 136

Query: 183 PDREALLQKLKETYSEIIG 202
           PDR+ L + +K++ ++I+G
Sbjct: 137 PDRQELSKIVKKSVADILG 155

[Close]

BLAST of CsGy6G008020 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-12
Identity = 52/177 (29.38%), Postives = 90/177 (50.85%), Query Frame = 0


Query: 26  SASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIARNVMGMATGEVPAEVAAGELAEMP 85
           +AS S  V +P +P+  T  S + P+        +     G ++  VP ++ +G   +  
Sbjct: 6   AASSSMAVMVPRVPAVSTRCSAV-PY--------LPPRSFGRSSFTVPLKLVSGNGLQKV 65

Query: 86  EIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVLVQWDKVEDKYAVSSLAVSGFVALWA 145
           E++K    +       E      N +I +    +  +WD +E+K  V        VA+W 
Sbjct: 66  ELLKTRASSE------ETSSIDTNELITD----LKEKWDGLENKSTVLIYGGGAIVAVWL 125

Query: 146 SAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGS 203
           S+ VV AI+ +PL+P ++ELVG+GYTGWF Y+ L+F+  R+ L + ++    +I GS
Sbjct: 126 SSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

[Close]

BLAST of CsGy6G008020 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09
Identity = 27/73 (36.99%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 130 YAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALL 189
           Y++        VAL+ ++ +VS+++ +PL P L+E+VG+GYT WF  + L+F+ +RE L 
Sbjct: 118 YSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELK 177

Query: 190 QKLKETYSEIIGS 203
            K+ E   +++GS
Sbjct: 178 TKVSEIKKQVLGS 190

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BLAST of CsGy6G008020 vs. ExPASy Swiss-Prot
Match: Q119Z5 (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.5e-05
Identity = 21/55 (38.18%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 147 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIG 202
           A V+ A+D +P++  + EL+G+ Y  WF Y+ L+ R +R+ LL K++    EI G
Sbjct: 824 AVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENIKREIFG 878

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BLAST of CsGy6G008020 vs. NCBI nr
Match: XP_004140528.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypothetical protein Csa_005298 [Cucumis sativus])

HSP 1 Score: 313 bits (803), Expect = 1.25e-106
Identity = 175/203 (86.21%), Postives = 175/203 (86.21%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVL 120
           ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEA                          
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEA-------------------------- 120

Query: 121 VQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI 180
             WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI
Sbjct: 121 --WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI 175

Query: 181 FRPDREALLQKLKETYSEIIGSS 203
           FRPDREALLQKLKETYSEIIGSS
Sbjct: 181 FRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of CsGy6G008020 vs. NCBI nr
Match: XP_038906765.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida])

HSP 1 Score: 305 bits (780), Expect = 3.99e-103
Identity = 168/203 (82.76%), Postives = 172/203 (84.73%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPS+ VPLPTLPSPPTP SQIRPWKSTAYCRK+
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSANVPLPTLPSPPTPSSQIRPWKSTAYCRKV 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVL 120
           ARNVM MATGEVPAEVAAGELAEMPEI+KKVQEA                          
Sbjct: 61  ARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEA-------------------------- 120

Query: 121 VQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI 180
             WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPL+PGLLELVGIGYTGWFAYKNLI
Sbjct: 121 --WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLI 175

Query: 181 FRPDREALLQKLKETYSEIIGSS 203
           FRPDREALLQKLKETYSEIIGSS
Sbjct: 181 FRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of CsGy6G008020 vs. NCBI nr
Match: XP_008459821.1 (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039802.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa] >TYK24695.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (771), Expect = 9.72e-102
Identity = 170/204 (83.33%), Postives = 172/204 (84.31%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLPTLPSPPTP +QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFV 120
           IARNVM MATGEVPAEVAAGELAEMPEI+KKVQEA                         
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEA------------------------- 120

Query: 121 LVQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNL 180
              WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNL
Sbjct: 121 ---WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNL 176

Query: 181 IFRPDREALLQKLKETYSEIIGSS 203
           IFRPDREALLQKLKETYSEIIGSS
Sbjct: 181 IFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of CsGy6G008020 vs. NCBI nr
Match: XP_022992417.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 293 bits (751), Expect = 1.04e-98
Identity = 161/203 (79.31%), Postives = 170/203 (83.74%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP P +QIRPWKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVL 120
           ARNVM MATGEVPAEVA  E+AE+PEI+KKVQEA                          
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEA-------------------------- 120

Query: 121 VQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI 180
             WDKV+DKYAVSSLAVSGFVALWASAGVVSAIDRLPL+PGLLELVGIGYTGWFAYKNLI
Sbjct: 121 --WDKVDDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLI 175

Query: 181 FRPDREALLQKLKETYSEIIGSS 203
           FRPDREALLQKL+ETY+EIIGSS
Sbjct: 181 FRPDREALLQKLRETYNEIIGSS 175

[Close]

BLAST of CsGy6G008020 vs. NCBI nr
Match: XP_022929793.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749.1 protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita pepo subsp. pepo] >KAG7013838.1 Protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292 bits (747), Expect = 4.25e-98
Identity = 160/203 (78.82%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP P +QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVL 120
           ARNVM MATGEVPAEVA  E+AE+PEI+KKVQEA                          
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEA-------------------------- 120

Query: 121 VQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI 180
             WDKV+DKYAVSSLAVSGFVALWASAGVVSAIDRLPL+PGLLELVGIGYTGWFAYKNLI
Sbjct: 121 --WDKVDDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLI 175

Query: 181 FRPDREALLQKLKETYSEIIGSS 203
           FRPDREALLQKL+ETY+E+IGSS
Sbjct: 181 FRPDREALLQKLRETYNEVIGSS 175

[Close]

BLAST of CsGy6G008020 vs. ExPASy TrEMBL
Match: A0A0A0KCB7 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 SV=1)

HSP 1 Score: 313 bits (803), Expect = 6.05e-107
Identity = 175/203 (86.21%), Postives = 175/203 (86.21%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVL 120
           ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEA                          
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEA-------------------------- 120

Query: 121 VQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI 180
             WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI
Sbjct: 121 --WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI 175

Query: 181 FRPDREALLQKLKETYSEIIGSS 203
           FRPDREALLQKLKETYSEIIGSS
Sbjct: 181 FRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of CsGy6G008020 vs. ExPASy TrEMBL
Match: A0A5A7T8Q0 (Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002480 PE=4 SV=1)

HSP 1 Score: 301 bits (771), Expect = 4.70e-102
Identity = 170/204 (83.33%), Postives = 172/204 (84.31%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLPTLPSPPTP +QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFV 120
           IARNVM MATGEVPAEVAAGELAEMPEI+KKVQEA                         
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEA------------------------- 120

Query: 121 LVQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNL 180
              WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNL
Sbjct: 121 ---WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNL 176

Query: 181 IFRPDREALLQKLKETYSEIIGSS 203
           IFRPDREALLQKLKETYSEIIGSS
Sbjct: 181 IFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of CsGy6G008020 vs. ExPASy TrEMBL
Match: A0A1S3CCA4 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498834 PE=4 SV=1)

HSP 1 Score: 301 bits (771), Expect = 4.70e-102
Identity = 170/204 (83.33%), Postives = 172/204 (84.31%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLPTLPSPPTP +QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFV 120
           IARNVM MATGEVPAEVAAGELAEMPEI+KKVQEA                         
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEA------------------------- 120

Query: 121 LVQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNL 180
              WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNL
Sbjct: 121 ---WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNL 176

Query: 181 IFRPDREALLQKLKETYSEIIGSS 203
           IFRPDREALLQKLKETYSEIIGSS
Sbjct: 181 IFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of CsGy6G008020 vs. ExPASy TrEMBL
Match: A0A6J1JPR9 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488730 PE=4 SV=1)

HSP 1 Score: 293 bits (751), Expect = 5.06e-99
Identity = 161/203 (79.31%), Postives = 170/203 (83.74%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP P +QIRPWKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVL 120
           ARNVM MATGEVPAEVA  E+AE+PEI+KKVQEA                          
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEA-------------------------- 120

Query: 121 VQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI 180
             WDKV+DKYAVSSLAVSGFVALWASAGVVSAIDRLPL+PGLLELVGIGYTGWFAYKNLI
Sbjct: 121 --WDKVDDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLI 175

Query: 181 FRPDREALLQKLKETYSEIIGSS 203
           FRPDREALLQKL+ETY+EIIGSS
Sbjct: 181 FRPDREALLQKLRETYNEIIGSS 175

[Close]

BLAST of CsGy6G008020 vs. ExPASy TrEMBL
Match: A0A6J1ET79 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436295 PE=4 SV=1)

HSP 1 Score: 292 bits (747), Expect = 2.06e-98
Identity = 160/203 (78.82%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP P +QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVL 120
           ARNVM MATGEVPAEVA  E+AE+PEI+KKVQEA                          
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEA-------------------------- 120

Query: 121 VQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLI 180
             WDKV+DKYAVSSLAVSGFVALWASAGVVSAIDRLPL+PGLLELVGIGYTGWFAYKNLI
Sbjct: 121 --WDKVDDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLI 175

Query: 181 FRPDREALLQKLKETYSEIIGSS 203
           FRPDREALLQKL+ETY+E+IGSS
Sbjct: 181 FRPDREALLQKLRETYNEVIGSS 175

[Close]

BLAST of CsGy6G008020 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-46
Identity = 107/205 (52.20%), Postives = 131/205 (63.90%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQ----SHTRAAKATAYCRKIV 61

Query: 67  RNVMGMAT---GEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDF 126
           RNV+  AT   GE PA     E  E+PEIVK  QEA                        
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEA------------------------ 121

Query: 127 VLVQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKN 186
               W+KV+DKYA+ SLA +G VALW SAG++SAIDRLPLVPG+LELVGIGYTGWF YKN
Sbjct: 122 ----WEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKN 174

Query: 187 LIFRPDREALLQKLKETYSEIIGSS 204
           L+F+PDREAL +K+K TY +I+GSS
Sbjct: 182 LVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of CsGy6G008020 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-46
Identity = 107/205 (52.20%), Postives = 131/205 (63.90%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQ----SHTRAAKATAYCRKIV 61

Query: 67  RNVMGMAT---GEVPAEVAAGELAEMPEIVKKVQEAVCQICFFERRKRKVNYIIINGLDF 126
           RNV+  AT   GE PA     E  E+PEIVK  QEA                        
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEA------------------------ 121

Query: 127 VLVQWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKN 186
               W+KV+DKYA+ SLA +G VALW SAG++SAIDRLPLVPG+LELVGIGYTGWF YKN
Sbjct: 122 ----WEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKN 174

Query: 187 LIFRPDREALLQKLKETYSEIIGSS 204
           L+F+PDREAL +K+K TY +I+GSS
Sbjct: 182 LVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of CsGy6G008020 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-16
Identity = 35/79 (44.30%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 123 WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFR 182
           WDK ED+  +  L  +G VALWAS  +++AID+LP++    ELVGI ++ WF Y+ L+F+
Sbjct: 77  WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFK 136

Query: 183 PDREALLQKLKETYSEIIG 202
           PDR+ L + +K++ ++I+G
Sbjct: 137 PDRQELSKIVKKSVADILG 155

[Close]

BLAST of CsGy6G008020 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-16
Identity = 35/79 (44.30%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 123 WDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFR 182
           WDK ED+  +  L  +G VALWAS  +++AID+LP++    ELVGI ++ WF Y+ L+F+
Sbjct: 76  WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFK 135

Query: 183 PDREALLQKLKETYSEIIG 202
           PDR+ L + +K++ ++I+G
Sbjct: 136 PDRQELSKIVKKSVADILG 154

[Close]

BLAST of CsGy6G008020 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-13
Identity = 52/177 (29.38%), Postives = 90/177 (50.85%), Query Frame = 0


Query: 26  SASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKIARNVMGMATGEVPAEVAAGELAEMP 85
           +AS S  V +P +P+  T  S + P+        +     G ++  VP ++ +G   +  
Sbjct: 6   AASSSMAVMVPRVPAVSTRCSAV-PY--------LPPRSFGRSSFTVPLKLVSGNGLQKV 65

Query: 86  EIVKKVQEAVCQICFFERRKRKVNYIIINGLDFVLVQWDKVEDKYAVSSLAVSGFVALWA 145
           E++K    +       E      N +I +    +  +WD +E+K  V        VA+W 
Sbjct: 66  ELLKTRASSE------ETSSIDTNELITD----LKEKWDGLENKSTVLIYGGGAIVAVWL 125

Query: 146 SAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGS 203
           S+ VV AI+ +PL+P ++ELVG+GYTGWF Y+ L+F+  R+ L + ++    +I GS
Sbjct: 126 SSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

The following BLAST results are available for this feature:

BLAST of CsGy6G008020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCA1	1.6e-45	52.20	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M812	1.7e-15	44.30	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O04616	6.7e-12	29.38	Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LDD3	1.8e-09	36.99	Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q119Z5	3.5e-05	38.18	Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=...	[more]

BLAST of CsGy6G008020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140528.1	1.25e-106	86.21	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypo...	[more]
XP_038906765.1	3.99e-103	82.76	protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida]	[more]
XP_008459821.1	9.72e-102	83.33	PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039...	[more]
XP_022992417.1	1.04e-98	79.31	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima]	[more]
XP_022929793.1	4.25e-98	78.82	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749...	[more]

BLAST of CsGy6G008020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCB7	6.05e-107	86.21	CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 S...	[more]
A0A5A7T8Q0	4.70e-102	83.33	Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CCA4	4.70e-102	83.33	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1JPR9	5.06e-99	79.31	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1ET79	2.06e-98	78.82	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CsGy6G008020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46820.1	1.1e-46	52.20	photosystem I P subunit	[more]
AT2G46820.2	1.1e-46	52.20	photosystem I P subunit	[more]
AT1G52220.1	1.2e-16	44.30	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G52220.2	1.2e-16	44.30	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G01150.1	4.7e-13	29.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 122..201 e-value: 3.2E-28 score: 97.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	PANTHER	PTHR33222:SF9	PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC	coord: 122..203
None	No IPR available	PANTHER	PTHR33222:SF9	PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC	coord: 1..94
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 1..94
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 122..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G008020.2	CsGy6G008020.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid