CsGy6G007920 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G007920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Ciliary neurotrophic factor
Location	Gy14Chr6: 6664910 .. 6666428 (+)
RNA-Seq Expression	CsGy6G007920
Synteny	CsGy6G007920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAATTATTGTTTGTTAAAAGTTTAGGGGTTAAAATTAATACAAATTCAATTTTAAAAAGTGTATCTTTAAATGTAACTTTAGCTGTAGGTAAGAAGCTATGCATGTGTGATGTTGATTTTTGTGCAACCATGCAAAATTGCAAAATGGAAGACTGTAGAAGACAGACTACTGACAACACGCCACGTGGATGTCACTGCTACCTGTCACCCTCATAGCCGCGGTCACCCATGGCGGCCTCCATCAATGGCGGAACCCGATACTGGAAGAGCGATATTGAAAATCCGTCACCTCTTCCCTTCCATAGAAAATTTCAAGTGAAACAAATCCATGGAAGAAGAAGAGCAACGCCTAGAGTTGATTAGCCATGCCATTAGGAGGCTACTTGAAGATAACAAGAACAAGAAATCCTCTGATCGGAGCTCCGTCGACGATGGCGATGAAAACGGAAACCCTTCTCTCCTCCGCGACTTGCTCTCTCAGGTACACCAGATTTCACGCTTTGGATTTCCGGAACACTGAACTGAAACTTCAAATCCCTATCCCTATCGTTATTCTATTGAGGTTTTTGATTTGTTGCCTCGTTATGCTTTGGTTTCTTTTTCGTGTTTTTCGATTGATTTTGCTCTGAATTTCGTATTTTAGTTCTAATCAGGATTACTCGTGTTGATTCATATAGAATCCCACCTAGATTTTCCCTTCTGAACTTGTTTCATGATGATTTCATTGATTGTTATCATCCTCCTCCAAATTTCTGTCTCTGCACTTTTAAATTGTAAATTTGGAAACCAAATTCATTTCTTCAACGTCACAGATTGAGTCACTGAAAGAAGGAACAGAATCAGAAGAGTTAATTTCTGCATTAGATACTTTGAAAACAAAAGTTGAAAGTTCTATTAAAGAGGAAATTGTTGATGATGAGTGCAGTAGAGAAGACGTTGTCAAAGAGTTGAAGAAGCTGAAGAGGCAAAACCTTTTAACTCATTGTCTTCTCTCAGTGATGATTGTATTGACTGTTGTTTGGCAGCTCTCTGAGGTCTCCATTATCTTGAATGTAAAAGATAAAATCAGCCATCCCTTTAGATCTTTGGGTAATTTTATCTCAGGAATGTTCAGACGCCCCAAAACCATTGTTGATAATACAGACAAGATTTCATCTAAACAAGACCATGATGAAGTTTCATTGCTTCCCCCTCTCAAAATTTCAGACCTTCCTCAAGTGGGTTTGCAATAATTTTGGATTTTAATGGCTAAAAACATTGCTTTTCCACTTGTTCTTGAACCAACAAAGGGGAGATGGGGTACAGAGAATGAAGCTCCCAAATGGAGATAAGAAGATGGTTTGGCTAGCAATTTTGCGTCCCTTCAGACATTACTTTTTTCTTTTGATAGTTTAATGAATTTGATTCTGTCTACTATAGTCGATTGTCTATTGTATTATGGCAAAACTATGCACCTCTTTAAGAATTTTACAATTTTGATCTCAAATCTTTTTTTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

CAAAAAATTATTGTTTGTTAAAAGTTTAGGGGTTAAAATTAATACAAATTCAATTTTAAAAAGTGTATCTTTAAATGTAACTTTAGCTGTAGGTAAGAAGCTATGCATGTGTGATGTTGATTTTTGTGCAACCATGCAAAATTGCAAAATGGAAGACTGTAGAAGACAGACTACTGACAACACGCCACGTGGATGTCACTGCTACCTGTCACCCTCATAGCCGCGGTCACCCATGGCGGCCTCCATCAATGGCGGAACCCGATACTGGAAGAGCGATATTGAAAATCCGTCACCTCTTCCCTTCCATAGAAAATTTCAAGTGAAACAAATCCATGGAAGAAGAAGAGCAACGCCTAGAGTTGATTAGCCATGCCATTAGGAGGCTACTTGAAGATAACAAGAACAAGAAATCCTCTGATCGGAGCTCCGTCGACGATGGCGATGAAAACGGAAACCCTTCTCTCCTCCGCGACTTGCTCTCTCAGATTGAGTCACTGAAAGAAGGAACAGAATCAGAAGAGTTAATTTCTGCATTAGATACTTTGAAAACAAAAGTTGAAAGTTCTATTAAAGAGGAAATTGTTGATGATGAGTGCAGTAGAGAAGACGTTGTCAAAGAGTTGAAGAAGCTGAAGAGGCAAAACCTTTTAACTCATTGTCTTCTCTCAGTGATGATTGTATTGACTGTTGTTTGGCAGCTCTCTGAGGTCTCCATTATCTTGAATGTAAAAGATAAAATCAGCCATCCCTTTAGATCTTTGGGTAATTTTATCTCAGGAATGTTCAGACGCCCCAAAACCATTGTTGATAATACAGACAAGATTTCATCTAAACAAGACCATGATGAAGTTTCATTGCTTCCCCCTCTCAAAATTTCAGACCTTCCTCAAGTGGGTTTGCAATAATTTTGGATTTTAATGGCTAAAAACATTGCTTTTCCACTTGTTCTTGAACCAACAAAGGGGAGATGGGGTACAGAGAATGAAGCTCCCAAATGGAGATAAGAAGATGGTTTGGCTAGCAATTTTGCGTCCCTTCAGACATTACTTTTTTCTTTTGATAGTTTAATGAATTTGATTCTGTCTACTATAGTCGATTGTCTATTGTATTATGGCAAAACTATGCACCTCTTTAAGAATTTTACAATTTTGATCTCAAATCTTTTTTTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGAAGAAGAAGAGCAACGCCTAGAGTTGATTAGCCATGCCATTAGGAGGCTACTTGAAGATAACAAGAACAAGAAATCCTCTGATCGGAGCTCCGTCGACGATGGCGATGAAAACGGAAACCCTTCTCTCCTCCGCGACTTGCTCTCTCAGATTGAGTCACTGAAAGAAGGAACAGAATCAGAAGAGTTAATTTCTGCATTAGATACTTTGAAAACAAAAGTTGAAAGTTCTATTAAAGAGGAAATTGTTGATGATGAGTGCAGTAGAGAAGACGTTGTCAAAGAGTTGAAGAAGCTGAAGAGGCAAAACCTTTTAACTCATTGTCTTCTCTCAGTGATGATTGTATTGACTGTTGTTTGGCAGCTCTCTGAGGTCTCCATTATCTTGAATGTAAAAGATAAAATCAGCCATCCCTTTAGATCTTTGGGTAATTTTATCTCAGGAATGTTCAGACGCCCCAAAACCATTGTTGATAATACAGACAAGATTTCATCTAAACAAGACCATGATGAAGTTTCATTGCTTCCCCCTCTCAAAATTTCAGACCTTCCTCAAGTGGGTTTGCAATAA

Protein sequence

MEEEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESEELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVVWQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLKISDLPQVGLQ*

Homology

[Close]

BLAST of CsGy6G007920 vs. NCBI nr
Match: XP_004140639.1 (uncharacterized protein LOC101222559 [Cucumis sativus] >KGN46465.1 hypothetical protein Csa_005472 [Cucumis sativus])

HSP 1 Score: 348 bits (894), Expect = 1.70e-120
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MEEEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTE 60
           MEEEEQRLELISHAIRRLL DNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTE
Sbjct: 1   MEEEEQRLELISHAIRRLLVDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTE 60

Query: 61  SEELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVV 120
           SEELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVV
Sbjct: 61  SEELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVV 120

Query: 121 WQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLK 180
           WQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLK
Sbjct: 121 WQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLK 180

Query: 181 ISDLPQVGLQ 190
           ISDLPQVGLQ
Sbjct: 181 ISDLPQVGLQ 190

[Close]

BLAST of CsGy6G007920 vs. NCBI nr
Match: XP_008459843.1 (PREDICTED: uncharacterized protein LOC103498843 [Cucumis melo] >KAA0039810.1 uncharacterized protein E6C27_scaffold122G00830 [Cucumis melo var. makuwa] >TYK24687.1 uncharacterized protein E5676_scaffold266G002400 [Cucumis melo var. makuwa])

HSP 1 Score: 325 bits (832), Expect = 4.62e-111
Identity = 173/188 (92.02%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 3   EEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESE 62
           EEEQRLELISHAI+RLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTES+
Sbjct: 2   EEEQRLELISHAIKRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESD 61

Query: 63  ELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVVWQ 122
           E  SALDTLKTKVES IKEEIVDDECSRED+VKELKKLKRQNLLTHCLLSVMIVLT+VWQ
Sbjct: 62  EFTSALDTLKTKVESFIKEEIVDDECSREDIVKELKKLKRQNLLTHCLLSVMIVLTIVWQ 121

Query: 123 LSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLKIS 182
           LSEVSIILNVKDKISHPFRSLGNFISGMF+RPKTIVDNTDK SS+QD+DEVSLLPPLKI 
Sbjct: 122 LSEVSIILNVKDKISHPFRSLGNFISGMFKRPKTIVDNTDKNSSRQDNDEVSLLPPLKIP 181

Query: 183 DLPQVGLQ 190
           +LP +GLQ
Sbjct: 182 ELPHMGLQ 189

[Close]

BLAST of CsGy6G007920 vs. NCBI nr
Match: XP_038874574.1 (uncharacterized protein LOC120067172 [Benincasa hispida])

HSP 1 Score: 300 bits (767), Expect = 4.11e-101
Identity = 164/192 (85.42%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 1   MEEEEQRLELISHAIRRLLED--NKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEG 60
           MEEEEQRLELIS AIRRLLE+  NKNKKSSDRSS+DDGDEN N +LLRDLLSQIESLKEG
Sbjct: 1   MEEEEQRLELISLAIRRLLEEDRNKNKKSSDRSSLDDGDENENRTLLRDLLSQIESLKEG 60

Query: 61  TESEELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLT 120
           TESEE  S LDTLKTKVESS+KEEIVDDECSRED+VKELKKLKRQNLLTHCLLSVMI++T
Sbjct: 61  TESEEFASVLDTLKTKVESSVKEEIVDDECSREDIVKELKKLKRQNLLTHCLLSVMILVT 120

Query: 121 VVWQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPP 180
           VVWQLSEVSIILNVKDKISHPF+SLGN ISG+ +RPKTIVDNT+K SSKQDHDE S+LPP
Sbjct: 121 VVWQLSEVSIILNVKDKISHPFKSLGNLISGVLKRPKTIVDNTEKNSSKQDHDEASVLPP 180

Query: 181 LKISDLPQVGLQ 190
           LKI +LP V LQ
Sbjct: 181 LKIPELPHVRLQ 192

[Close]

BLAST of CsGy6G007920 vs. NCBI nr
Match: XP_022155422.1 (uncharacterized protein LOC111022569 [Momordica charantia])

HSP 1 Score: 239 bits (609), Expect = 3.42e-77
Identity = 131/181 (72.38%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 3   EEEQRLELISHAIRRLL-EDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTES 62
           EEEQRLELI+ AIRRL+ E+N NKKSSDRSSV D DE  + +LLR+LLSQIESLKE  ES
Sbjct: 2   EEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEEAES 61

Query: 63  EELISALDTLKTKVESSIKEEIVDDECS-REDVVKELKKLKRQNLLTHCLLSVMIVLTVV 122
           EE+ SA+DT KTK ++S++EEIVDDECS RE++V+ELKK+KRQNL+THCLLSVMIV+TVV
Sbjct: 62  EEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKKVKRQNLVTHCLLSVMIVVTVV 121

Query: 123 WQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLK 181
           WQLSEVSIILN+KDKI+HPFRSLG+F+SG+ +RPKTIV++T+K SSKQDHDE ++LP ++
Sbjct: 122 WQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVE 181

[Close]

BLAST of CsGy6G007920 vs. NCBI nr
Match: KAG7025378.1 (hypothetical protein SDJN02_11873 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233 bits (593), Expect = 9.27e-75
Identity = 131/188 (69.68%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 3   EEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESE 62
           E+EQRLELI  AI RLL++NKNK+SSDRS + D DENG+ +LL DLLSQIESLKEGTESE
Sbjct: 2   EKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTESE 61

Query: 63  ELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVVWQ 122
           EL SALD LK+K ++S  ++  DDE SRED+VKELKK+KRQN+LT CL+SVMIV+TVVWQ
Sbjct: 62  ELASALDNLKSKAKNSDDDD--DDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQ 121

Query: 123 LSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLKIS 182
           LSEVSI+LNVKD+ISHPFR LG+ ISG  +RPKTIV+N    S KQ+HDE S+LP L+I 
Sbjct: 122 LSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVEN----SPKQEHDEASMLPTLQIP 181

Query: 183 DLPQVGLQ 190
           +LP +GLQ
Sbjct: 182 ELPHMGLQ 183

[Close]

BLAST of CsGy6G007920 vs. ExPASy TrEMBL
Match: A0A0A0K9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095320 PE=4 SV=1)

HSP 1 Score: 348 bits (894), Expect = 8.21e-121
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MEEEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTE 60
           MEEEEQRLELISHAIRRLL DNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTE
Sbjct: 1   MEEEEQRLELISHAIRRLLVDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTE 60

Query: 61  SEELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVV 120
           SEELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVV
Sbjct: 61  SEELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVV 120

Query: 121 WQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLK 180
           WQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLK
Sbjct: 121 WQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLK 180

Query: 181 ISDLPQVGLQ 190
           ISDLPQVGLQ
Sbjct: 181 ISDLPQVGLQ 190

[Close]

BLAST of CsGy6G007920 vs. ExPASy TrEMBL
Match: A0A5A7T973 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002400 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 2.24e-111
Identity = 173/188 (92.02%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 3   EEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESE 62
           EEEQRLELISHAI+RLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTES+
Sbjct: 2   EEEQRLELISHAIKRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESD 61

Query: 63  ELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVVWQ 122
           E  SALDTLKTKVES IKEEIVDDECSRED+VKELKKLKRQNLLTHCLLSVMIVLT+VWQ
Sbjct: 62  EFTSALDTLKTKVESFIKEEIVDDECSREDIVKELKKLKRQNLLTHCLLSVMIVLTIVWQ 121

Query: 123 LSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLKIS 182
           LSEVSIILNVKDKISHPFRSLGNFISGMF+RPKTIVDNTDK SS+QD+DEVSLLPPLKI 
Sbjct: 122 LSEVSIILNVKDKISHPFRSLGNFISGMFKRPKTIVDNTDKNSSRQDNDEVSLLPPLKIP 181

Query: 183 DLPQVGLQ 190
           +LP +GLQ
Sbjct: 182 ELPHMGLQ 189

[Close]

BLAST of CsGy6G007920 vs. ExPASy TrEMBL
Match: A0A1S3CAM6 (uncharacterized protein LOC103498843 OS=Cucumis melo OX=3656 GN=LOC103498843 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 2.24e-111
Identity = 173/188 (92.02%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 3   EEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESE 62
           EEEQRLELISHAI+RLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTES+
Sbjct: 2   EEEQRLELISHAIKRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESD 61

Query: 63  ELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVVWQ 122
           E  SALDTLKTKVES IKEEIVDDECSRED+VKELKKLKRQNLLTHCLLSVMIVLT+VWQ
Sbjct: 62  EFTSALDTLKTKVESFIKEEIVDDECSREDIVKELKKLKRQNLLTHCLLSVMIVLTIVWQ 121

Query: 123 LSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLKIS 182
           LSEVSIILNVKDKISHPFRSLGNFISGMF+RPKTIVDNTDK SS+QD+DEVSLLPPLKI 
Sbjct: 122 LSEVSIILNVKDKISHPFRSLGNFISGMFKRPKTIVDNTDKNSSRQDNDEVSLLPPLKIP 181

Query: 183 DLPQVGLQ 190
           +LP +GLQ
Sbjct: 182 ELPHMGLQ 189

[Close]

BLAST of CsGy6G007920 vs. ExPASy TrEMBL
Match: A0A6J1DPA5 (uncharacterized protein LOC111022569 OS=Momordica charantia OX=3673 GN=LOC111022569 PE=4 SV=1)

HSP 1 Score: 239 bits (609), Expect = 1.65e-77
Identity = 131/181 (72.38%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 3   EEEQRLELISHAIRRLL-EDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTES 62
           EEEQRLELI+ AIRRL+ E+N NKKSSDRSSV D DE  + +LLR+LLSQIESLKE  ES
Sbjct: 2   EEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEEAES 61

Query: 63  EELISALDTLKTKVESSIKEEIVDDECS-REDVVKELKKLKRQNLLTHCLLSVMIVLTVV 122
           EE+ SA+DT KTK ++S++EEIVDDECS RE++V+ELKK+KRQNL+THCLLSVMIV+TVV
Sbjct: 62  EEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKKVKRQNLVTHCLLSVMIVVTVV 121

Query: 123 WQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLK 181
           WQLSEVSIILN+KDKI+HPFRSLG+F+SG+ +RPKTIV++T+K SSKQDHDE ++LP ++
Sbjct: 122 WQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVE 181

[Close]

BLAST of CsGy6G007920 vs. ExPASy TrEMBL
Match: A0A6J1KTZ8 (uncharacterized protein LOC111497620 OS=Cucurbita maxima OX=3661 GN=LOC111497620 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 9.76e-74
Identity = 134/205 (65.37%), Postives = 161/205 (78.54%), Query Frame = 0


Query: 3   EEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGT--- 62
           E+EQRLELI  AI RLL++NKNK+SSDRS + D DENG+ +LL DLLSQIESLKEGT   
Sbjct: 2   EKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTKEG 61

Query: 63  ---------ESEELISALDTLKTKVESSIKEEIVDD-----ECSREDVVKELKKLKRQNL 122
                    ESEEL SALD LK K ++S+KEEI DD     E S+ED+VKELKK+KRQN+
Sbjct: 62  TKEGTKEGTESEELASALDNLKAKSKNSVKEEIDDDDDDEEEFSKEDIVKELKKVKRQNV 121

Query: 123 LTHCLLSVMIVLTVVWQLSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKIS 182
           LT CL+SVMIV+TVVWQLSEVSI+LNVKD+ISHPFR LG+ ISG  +RPKTI++N    S
Sbjct: 122 LTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIIEN----S 181

Query: 183 SKQDHDEVSLLPPLKISDLPQVGLQ 190
            KQ+HDE S+LPPL+I +LP VGL+
Sbjct: 182 PKQEHDEASMLPPLQIPELPHVGLR 202

[Close]

BLAST of CsGy6G007920 vs. TAIR 10
Match: AT1G27300.1 (unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-19
Identity = 68/195 (34.87%), Postives = 115/195 (58.97%), Query Frame = 0


Query: 3   EEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIES-------- 62
           E  + +E +S AI +LL + + +++S  + ++D D+      L  L+SQ+ES        
Sbjct: 2   ESSEDVENLSRAIEKLLHEKRKREASGDAFIEDADDQ---LFLSSLISQLESPNPKGKED 61

Query: 63  LKEGTESEELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVM 122
           +  G E E+   + D+  +K +S  + ++   E S E++ K++KK+K+QN +TH LLS  
Sbjct: 62  VITGEEEEKEEESADSSPSKGKSEGQRQL---EESIEEIAKDIKKVKKQNKITHVLLSAT 121

Query: 123 IVLTVVWQLSEVSIILNVKDKISHPFRSLGNFISGMFR---RP-KTIVDNTDKISSKQDH 182
           I+LT+VWQLSE S+I  +KD+ISHP RS+G  ++GMF+   RP K  +  T   + + +H
Sbjct: 122 IILTLVWQLSEYSMIFMLKDRISHPVRSIGGMLNGMFKGKLRPIKNQLAGTSNSNDQNNH 181

Query: 183 DEVSLL-PPLKISDL 185
              S   P L++ +L
Sbjct: 182 GNGSHTGPQLQVPEL 190

The following BLAST results are available for this feature:

BLAST of CsGy6G007920 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G007920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140639.1	1.70e-120	99.47	uncharacterized protein LOC101222559 [Cucumis sativus] >KGN46465.1 hypothetical ...	[more]
XP_008459843.1	4.62e-111	92.02	PREDICTED: uncharacterized protein LOC103498843 [Cucumis melo] >KAA0039810.1 unc...	[more]
XP_038874574.1	4.11e-101	85.42	uncharacterized protein LOC120067172 [Benincasa hispida]	[more]
XP_022155422.1	3.42e-77	72.38	uncharacterized protein LOC111022569 [Momordica charantia]	[more]
KAG7025378.1	9.27e-75	69.68	hypothetical protein SDJN02_11873 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsGy6G007920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9P4	8.21e-121	99.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095320 PE=4 SV=1	[more]
A0A5A7T973	2.24e-111	92.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CAM6	2.24e-111	92.02	uncharacterized protein LOC103498843 OS=Cucumis melo OX=3656 GN=LOC103498843 PE=...	[more]
A0A6J1DPA5	1.65e-77	72.38	uncharacterized protein LOC111022569 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1KTZ8	9.76e-74	65.37	uncharacterized protein LOC111497620 OS=Cucurbita maxima OX=3661 GN=LOC111497620...	[more]

BLAST of CsGy6G007920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27300.1	1.9e-19	34.87	unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..41
None	No IPR available	PANTHER	PTHR35280	F17L21.9	coord: 5..189
None	No IPR available	PANTHER	PTHR35280:SF1	F17L21.9	coord: 5..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G007920.1	CsGy6G007920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016020	membrane