CsGy6G005585 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G005585
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 5073565 .. 5073891 (-)
RNA-Seq Expression	CsGy6G005585
Synteny	CsGy6G005585

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTGGGATGTGGGGGGAGGGGACCACCACATGATGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTCCTCCTGCAGGCCCAAAGGGCCGCCTTTGGCCCACATCTAAGTGGACCCGGGCCCACCTCCCCCACCTCCATCACATGACACACTTCGACCTTCAATACTGGTCCCTACGCCCGTCTTTTGCGGTCCACGGAGCACCACAAAGCTCCTTTCCACCACTCACCTGGACCCCACTGCTGCTTCTTCGCCCTTCATCTCCTTCATCTCCTTCATCTCCTTCATCTCCTTCCTCTTCCCATCTTTCTTTTCCAAATGTTTAA

mRNA sequence

ATGAACCTGGGATGTGGGGGGAGGGGACCACCACATGATGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTCCTCCTGCAGGCCCAAAGGGCCGCCTTTGGCCCACATCTAAGTGGACCCGGGCCCACCTCCCCCACCTCCATCACATGACACACTTCGACCTTCAATACTGGTCCCTACGCCCGTCTTTTGCGGTCCACGGAGCACCACAAAGCTCCTTTCCACCACTCACCTGGACCCCACTGCTGCTTCTTCGCCCTTCATCTCCTTCATCTCCTTCATCTCCTTCATCTCCTTCCTCTTCCCATCTTTCTTTTCCAAATGTTTAA

Coding sequence (CDS)

ATGAACCTGGGATGTGGGGGGAGGGGACCACCACATGATGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTCCTCCTGCAGGCCCAAAGGGCCGCCTTTGGCCCACATCTAAGTGGACCCGGGCCCACCTCCCCCACCTCCATCACATGACACACTTCGACCTTCAATACTGGTCCCTACGCCCGTCTTTTGCGGTCCACGGAGCACCACAAAGCTCCTTTCCACCACTCACCTGGACCCCACTGCTGCTTCTTCGCCCTTCATCTCCTTCATCTCCTTCATCTCCTTCATCTCCTTCCTCTTCCCATCTTTCTTTTCCAAATGTTTAA

Protein sequence

MNLGCGGRGPPHDAAAAAAAVAAPPAGPKGRLWPTSKWTRAHLPHLHHMTHFDLQYWSLRPSFAVHGAPQSSFPPLTWTPLLLLRPSSPSSPSSPSSPSSSHLSFPNV*

Homology

[Close]

BLAST of CsGy6G005585 vs. NCBI nr
Match: KAE8646693.1 (hypothetical protein Csa_005030 [Cucumis sativus])

HSP 1 Score: 219 bits (559), Expect = 4.46e-72
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MNLGCGGRGPPHDAAAAAAAVAAPPAGPKGRLWPTSKWTRAHLPHLHHMTHFDLQYWSLR 60
           MNLGCGGRGPPHDAAAAAAAVAAPPAGPKGRLWPTSKWTRAHLPHLHHMTHFDLQYWSLR
Sbjct: 1   MNLGCGGRGPPHDAAAAAAAVAAPPAGPKGRLWPTSKWTRAHLPHLHHMTHFDLQYWSLR 60

Query: 61  PSFAVHGAPQSSFPPLTWTPLLLLRPSSPSSPSSPSSPSSSHLSFPNV 108
           PSFAVHGAPQSSFPPLTWTPLLLLRPSSPSSPSSPSSPSSSHLSFPNV
Sbjct: 61  PSFAVHGAPQSSFPPLTWTPLLLLRPSSPSSPSSPSSPSSSHLSFPNV 108

[Close]

BLAST of CsGy6G005585 vs. ExPASy TrEMBL
Match: A0A0A0K9Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G075185 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 1.86e-65
Identity = 101/108 (93.52%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MNLGCGGRGPPHDAAAAAAAVAAPPAGPKGRLWPTSKWTRAHLPHLHHMTHFDLQYWSLR 60
           MNLGCGGRGPPHDAAAAAAAVAAPPAGPKGRLWPTSKWTRAHLPHLHHMTHFDLQYWSLR
Sbjct: 1   MNLGCGGRGPPHDAAAAAAAVAAPPAGPKGRLWPTSKWTRAHLPHLHHMTHFDLQYWSLR 60

Query: 61  PSFAVHGAPQSSFPPLTWTPLLLLRPSSPSSPSSPSSPSSSHLSFPNV 108
           PSFAVHGAPQSSFPPLTWTPLLLL       PSSPSSPSSSHLSFPNV
Sbjct: 61  PSFAVHGAPQSSFPPLTWTPLLLLP------PSSPSSPSSSHLSFPNV 102

The following BLAST results are available for this feature:

BLAST of CsGy6G005585 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G005585 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646693.1	4.46e-72	100.00	hypothetical protein Csa_005030 [Cucumis sativus]	[more]

BLAST of CsGy6G005585 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9Q2	1.86e-65	93.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G075185 PE=4 SV=1	[more]

BLAST of CsGy6G005585 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G005585.1	CsGy6G005585.1	mRNA