CsGy6G003930 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G003930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Ferredoxin
Location	Gy14Chr6: 3699708 .. 3702219 (+)
RNA-Seq Expression	CsGy6G003930
Synteny	CsGy6G003930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCCCTCTCTCTCCCTTCGTAAGATCACTTCTCTCTCCTTTTCATTCCTTCTTTCTCTAAGTTTTCGCTCTTTTTTTTTTCTTCTTACGCTTTATGTTCTCTTTCTTTGCTTCTTTACTGGATCAACCTTTCTTGCGTATTTAATGCTCTTGATTTTTCTTTTATATTTCACCTATTGATTTCTCTTGATTTGTTTTCTCTTTCTTTCCTTTCGTTTATTCCACCTATTGTCTTGGAAGCTCCGCTGATGATGAATGAATGAACGCTTCACACTAGTGATTCTTTTTTTTTTTTTTCCTTTTCGTTTTTTCAATTTTTGAATTGTTCGAGGTTTTGGTTGTTGTTGCTCTGATGATATGATATGATATGATATGATATTCACGAGGTCTGATGCTTCTGTTGTCATTTTATCGCCTTGCATGCTTGTTGAGTCTTCTTTCCATTCCATATGAACTATTGGTGGTGATTTTGTTTAAGTTGTTCTGTTTTCTTTGCGGGACGACGGTGTGAAAAATGTTTAGGAATTAGGATCTGGTCCGTTTTTTATTTTTATTTCTTTACTGTTACTTCCTTTTGTGCTGCTCAGATTGTTTGTTGTGGATTGAACAATCGATAAACTAGTGTATTCTTTTCATTTGCTCAATAAAAGAAACATTTATCCGTTATTTCAAAAACTTTGAGGTATCCTTTTTTCTGTTTCCTTTCAACTTTTGTGGTATCGAACTATTGTAGGTTTGATTTACTAACCTCGAACGTATTTTTGCATTACTGGTTCATCGGTGCGACCAACATAACATGTCTTTCTTATTGTGATGAACTAACTTAGTTTTAATGAAATAGTTTTTTCCGTTAAGAATGAAATGTTATTGAAACTTTCCATATCTTATTCATCATCTGGAAGACTGGAACTATCTCATATCCTCCAATTGTCTTTTTTCATCAATTGCTGGTGTGAGCGTAGCTGATGAATGTGCAATATTTTGACGCTATGATATGAAATATCATGAATGATATTTAGTAGACAAGATCTTTTATCATCGATTTCTGCTTGAATGTTTTCATTTTGGAATTTTAACTTGTACGTATGGTTTCCAACTTTGCAGTGACAAGTAGATAAGGTTGCCGTGTAATTGTGTGATTAATTAACTTTGATCTTCTGTTGTCTAATAGATTTTTGCAAATTTCTGTCAAATTCTCTATTCTTAGTCCCTTCGAGGACATTCGATGAGTCTCTATTTTTATTTTCAGGTATTACTATTCTATTCAGAACATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCCGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCGATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATTTGTATTAATTTGTTTGCTTGTGTGTATTTTGTCAGTTGAATCTGATGATTGAACTTCCATCATGCTAAACTTTCCAAGACTAGGCTTAGTTTTTGAGGTTGAATGTCTATTTTGCAAGAATTATGCTCAGTAGAACTGCGAAATTTAAGTTGCTGGTTTAGCGGAAGTCGAAGTATCGAACATCATTCATGAATAATGGGTATATCTGTTTTAGTTTATGGTTAAGGGCCAAGAGAAGGTGTGAAAGTTCAATGCCGACAAATGGACATTAAGTTCCCAGCTCGGCTTCAAGTAAGTAACTATGCATATGCATATGATGGAGTGTCTCATCTTCATTCATTACTTGGCATAAAAATGAATTTCGTAGGTTATTAAAATGGATGAATATAAATTAGTAAATAATCTGATTGACCTGCCAAAGAAAAGAAAAAAACGTTTTGACGATTTGGAAATAAAAATAGATTTGTGTAGGGTGGGAAAGTGGATTGTTAAATCTTTGCTTTGCTTTTCTATTCTGCTTTGATAAAATATTTCTTGGTTTCCATTTTTCCAAATAAATTTATTGATTATTTTAATTTCAATTTTATTAATTGAAAAGAAATGGGTGCTTTTTCGTAAAATAACTATTTACACAGTAAATTCATTGCATCTTTTTCTTCTATGCAGTAAATGCATGTTTAAGTCTAAAAGCACACGAAGTACGAACTAAAATAGCTTATTTTGGACCATAAAATGGACAGAATATGGTAACGGTTATTTTTAGCATAGATTTATATAATTTCCTTTTTTTTTTTTTTT

mRNA sequence

CTCTCCCTCTCTCTCCCTTCGTAAGATCACTTCTCTCTCCTTTTCATTCCTTCTTTCTCTAAGTTTTCGCTCTTTTTTTTTTCTTCTTACGCTTTATGTTCTCTTTCTTTGCTTCTTTACTGGATCAACCTTTCTTGCGTATTTAATGCTCTTGATTTTTCTTTTATATTTCACCTATTGATTTCTCTTGATTTGTTTTCTCTTTCTTTCCTTTCGTTTATTCCACCTATTGTCTTGGAAGCTCCGCTGATGATGAATGAATGAACGCTTCACACTAGTATTACTATTCTATTCAGAACATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCCGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCGATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATTTGTATTAATTTGTTTGCTTGTGTGTATTTTGTCAGTTGAATCTGATGATTGAACTTCCATCATGCTAAACTTTCCAAGACTAGGCTTAGTTTTTGAGGTTGAATGTCTATTTTGCAAGAATTATGCTCAGTAGAACTGCGAAATTTAAGTTGCTGGTTTAGCGGAAGTCGAAGTATCGAACATCATTCATGAATAATGGGTATATCTGTTTTAGTTTATGGTTAAGGGCCAAGAGAAGGTGTGAAAGTTCAATGCCGACAAATGGACATTAAGTTCCCAGCTCGGCTTCAAGTAAGTAACTATGCATATGCATATGATGGAGTGTCTCATCTTCATTCATTACTTGGCATAAAAATGAATTTCGTAGGTTATTAAAATGGATGAATATAAATTAGTAAATAATCTGATTGACCTGCCAAAGAAAAGAAAAAAACGTTTTGACGATTTGGAAATAAAAATAGATTTGTGTAGGGTGGGAAAGTGGATTGTTAAATCTTTGCTTTGCTTTTCTATTCTGCTTTGATAAAATATTTCTTGGTTTCCATTTTTCCAAATAAATTTATTGATTATTTTAATTTCAATTTTATTAATTGAAAAGAAATGGGTGCTTTTTCGTAAAATAACTATTTACACAGTAAATTCATTGCATCTTTTTCTTCTATGCAGTAAATGCATGTTTAAGTCTAAAAGCACACGAAGTACGAACTAAAATAGCTTATTTTGGACCATAAAATGGACAGAATATGGTAACGGTTATTTTTAGCATAGATTTATATAATTTCCTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCCGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCGATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATTTGTATTAA

Protein sequence

MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY*

Homology

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BLAST of CsGy6G003930 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-49
Identity = 101/152 (66.45%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MSTVTLPTSSLI--KPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSS-QFKVSAMASYKV 60
           MST T  TS  +     T + S   V+ PSSL  F  V++   LK+S +  VSAMA YKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 61  KLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFL 120
           KL+GP+GEE+EFDAPDDAYILD+AE AG++LPYSCRAGACSTCAG++ SG+VDQ+DGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 121 DDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           DD Q E+GYVLTCV+YP+SDCVIHTHKEGDLY
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]

BLAST of CsGy6G003930 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-45
Identity = 96/155 (61.94%), Postives = 118/155 (76.13%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPP-TLRRSNALVQRPS---SLCSFRSVSRSFGLKSSQFKVSAMAS-- 60
           M+TV + ++S+ K     + +N L+   S   S+ S + VSRSFGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKL+GPDG+E+EF+  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CsGy6G003930 vs. ExPASy Swiss-Prot
Match: P14936 (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 53  ASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQT 112
           A YKVKLIGPDG+ENEFD PDD YILD+AE AG+DLPYSCRAGACSTCAG++  G VDQ+
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 113 DGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           DGSFL+D   EKGYVLTCVAYPQSD VIHTHKE +L+
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]

BLAST of CsGy6G003930 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-40
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 53  ASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQT 112
           A YKVKLIGP+GEENEF+  DD +ILD+AE AG+DLPYSCRAGACSTCAGQ+V G VDQ+
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 113 DGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           +GSFL+D   EKG+VLTCVAYPQSDCVIHTHKE +L+
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]

BLAST of CsGy6G003930 vs. ExPASy Swiss-Prot
Match: P94044 (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.0e-39
Identity = 75/118 (63.56%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 34  RSVSRSFGLK-SSQFKVSAMA-SYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYS 93
           R  +R+ G + SS+F  SA A  +KVKL+GPDG E+EF+APDD YIL++AE AG++LP+S
Sbjct: 38  RQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFS 97

Query: 94  CRAGACSTCAGQVVSGTVDQTDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           CRAG+CSTCAG++ +G VDQ++GSFLDD QM +GY+LTC++YP++DCVIHTHKE DLY
Sbjct: 98  CRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155

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BLAST of CsGy6G003930 vs. NCBI nr
Match: XP_011656571.1 (ferredoxin, root R-B1 [Cucumis sativus] >KGN46037.1 hypothetical protein Csa_005181 [Cucumis sativus])

HSP 1 Score: 299 bits (765), Expect = 3.58e-102
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CsGy6G003930 vs. NCBI nr
Match: XP_008456600.1 (PREDICTED: ferredoxin, root R-B2-like [Cucumis melo] >TYK11763.1 ferredoxin, root R-B2-like [Cucumis melo var. makuwa])

HSP 1 Score: 282 bits (721), Expect = 1.84e-95
Identity = 141/149 (94.63%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QME+GYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CsGy6G003930 vs. NCBI nr
Match: XP_038884210.1 (ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884211.1 ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884212.1 ferredoxin, root R-B2-like [Benincasa hispida])

HSP 1 Score: 265 bits (677), Expect = 9.40e-89
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           M T+ LPTS LIK  T RRSNALVQRPSSLCS RSVSR+FGLKSS F+VSAMA+YKVKLI
Sbjct: 1   MLTIKLPTSCLIKTTTPRRSNALVQRPSSLCSVRSVSRAFGLKSSSFRVSAMATYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QMEKGYVLTCVAYPQSDCVI THKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIQTHKEGDLY 149

[Close]

BLAST of CsGy6G003930 vs. NCBI nr
Match: XP_022922440.1 (ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root R-B2-like [Cucurbita moschata])

HSP 1 Score: 263 bits (671), Expect = 7.73e-88
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of CsGy6G003930 vs. NCBI nr
Match: KAG7032935.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263 bits (671), Expect = 1.05e-87
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 158

[Close]

BLAST of CsGy6G003930 vs. ExPASy TrEMBL
Match: A0A0A0KNA3 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1)

HSP 1 Score: 299 bits (765), Expect = 1.73e-102
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CsGy6G003930 vs. ExPASy TrEMBL
Match: A0A5D3CIL4 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00840 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 8.89e-96
Identity = 141/149 (94.63%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QME+GYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CsGy6G003930 vs. ExPASy TrEMBL
Match: A0A1S3C4A6 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496509 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 8.89e-96
Identity = 141/149 (94.63%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QME+GYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CsGy6G003930 vs. ExPASy TrEMBL
Match: A0A6J1E8R7 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1)

HSP 1 Score: 263 bits (671), Expect = 3.74e-88
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of CsGy6G003930 vs. ExPASy TrEMBL
Match: A0A6J1JQ79 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1)

HSP 1 Score: 259 bits (661), Expect = 1.25e-86
Identity = 130/149 (87.25%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFR+VSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ DGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDDQ 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of CsGy6G003930 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-46
Identity = 96/155 (61.94%), Postives = 118/155 (76.13%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPP-TLRRSNALVQRPS---SLCSFRSVSRSFGLKSSQFKVSAMAS-- 60
           M+TV + ++S+ K     + +N L+   S   S+ S + VSRSFGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKL+GPDG+E+EF+  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CsGy6G003930 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 154.1 bits (388), Expect = 9.1e-38
Identity = 85/146 (58.22%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 5   TLPTSSLIKPPTLRRSNALVQRPSSLCS--FRSVSRSFGLKSSQF---KVSAMASYKVKL 64
           T  +S+++    LRR     Q P SL S  F +    FGLKSS     +V+AMA+YKVK 
Sbjct: 4   TALSSAIVSTSFLRRQ----QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKF 63

Query: 65  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 124
           I P+GE+ E +  +D Y+LD+AE AGLDLPYSCRAG+CS+CAG+VVSG++DQ+D SFLDD
Sbjct: 64  ITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 123

Query: 125 KQMEKGYVLTCVAYPQSDCVIHTHKE 146
           +QM +GYVLTCVAYP SD VI THKE
Sbjct: 124 EQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of CsGy6G003930 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 5   TLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRS--FGLKSSQF---KVSAMASYKVKL 64
           T  +S+++    +RRS A    P SL S  S +    FGLKS      +V+AMA+YKVK 
Sbjct: 4   TALSSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 63

Query: 65  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 124
           I P+G E E +  DD Y+LD+AE AG+DLPYSCRAG+CS+CAG+VVSG+VDQ+D SFLDD
Sbjct: 64  ITPEG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDD 123

Query: 125 KQMEKGYVLTCVAYPQSDCVIHTHKEGDL 149
           +Q+ +G+VLTC AYP SD  I THKE D+
Sbjct: 124 EQIGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of CsGy6G003930 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-34
Identity = 74/146 (50.68%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 6   LPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQ---FKVSAMASYKVKLIGP 65
           L +S +IK P + R   +    + L +  + +  FGL SS+    KV A  S KVKLI P
Sbjct: 5   LYSSYIIKIPVISR---ISPSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISP 64

Query: 66  DGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQM 125
           +GEE E +  +D  IL+SAENAGL+LPYSCR+G C TC G++VSG VDQ+ GSFL+++Q+
Sbjct: 65  EGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQI 124

Query: 126 EKGYVLTCVAYPQSDCVIHTHKEGDL 149
           +KGY+LTC+A P  DCV++THK+ DL
Sbjct: 125 QKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of CsGy6G003930 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-16
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 2   STVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLIG 61
           ST++LP   L    +    NA +   ++  +F +  R               +YKV ++ 
Sbjct: 11  STISLPKPYLSNSFSFPLRNATLSTTTNRRNFLTTGRIIA-----------RAYKV-VVE 70

Query: 62  PDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQ 121
            DG+  E +   D  IL  A ++GLD+PY C  G C TC  ++V+GTVDQ+ G  L D  
Sbjct: 71  HDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDV 130

Query: 122 MEKGYVLTCVAYPQSDCVIHTHKEGDL 149
           +E+GY L C +YP SDC I    E +L
Sbjct: 131 VERGYTLLCASYPTSDCHIKMIPEEEL 144

The following BLAST results are available for this feature:

BLAST of CsGy6G003930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	1.3e-49	66.45	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	3.4e-45	61.94	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
P14936	5.0e-41	78.35	Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P14937	1.9e-40	76.29	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P94044	8.0e-39	63.56	Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1	[more]

BLAST of CsGy6G003930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656571.1	3.58e-102	100.00	ferredoxin, root R-B1 [Cucumis sativus] >KGN46037.1 hypothetical protein Csa_005...	[more]
XP_008456600.1	1.84e-95	94.63	PREDICTED: ferredoxin, root R-B2-like [Cucumis melo] >TYK11763.1 ferredoxin, roo...	[more]
XP_038884210.1	9.40e-89	88.59	ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884211.1 ferredoxin, root ...	[more]
XP_022922440.1	7.73e-88	88.59	ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root...	[more]
KAG7032935.1	1.05e-87	88.59	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]

BLAST of CsGy6G003930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNA3	1.73e-102	100.00	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1	[more]
A0A5D3CIL4	8.89e-96	94.63	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00840 PE=...	[more]
A0A1S3C4A6	8.89e-96	94.63	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496509 PE=3 SV=1	[more]
A0A6J1E8R7	3.74e-88	88.59	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1	[more]
A0A6J1JQ79	1.25e-86	87.25	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1	[more]

BLAST of CsGy6G003930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	2.4e-46	61.94	ferredoxin 3	[more]
AT1G10960.1	9.1e-38	58.22	ferredoxin 1	[more]
AT1G60950.1	1.1e-35	55.03	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	4.7e-34	50.68	ferredoxin 4	[more]
AT4G14890.1	2.0e-16	34.69	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..135 e-value: 4.9E-20 score: 71.3
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 55..146 score: 12.996633
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 57..141 e-value: 1.13126E-32 score: 109.022
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 53..149 e-value: 4.3E-50 score: 165.5
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 52..149 e-value: 3.2E-36 score: 125.1
None	No IPR available	PANTHER	PTHR43112:SF30	FERREDOXIN-3, CHLOROPLASTIC	coord: 1..149
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 1..149
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 92..100
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 38..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G003930.2	CsGy6G003930.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding