CsGy6G002170 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G002170
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr6: 1567811 .. 1568065 (+)
RNA-Seq ExpressionCsGy6G002170
SyntenyCsGy6G002170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAA

mRNA sequence

ATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAA

Coding sequence (CDS)

ATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAA

Protein sequence

MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLLLGFLPKGGSIPPSGPSKGTNNFNT*
Homology
BLAST of CsGy6G002170 vs. NCBI nr
Match: KGN45830.1 (hypothetical protein Csa_005505 [Cucumis sativus])

HSP 1 Score: 160 bits (406), Expect = 1.73e-49
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

BLAST of CsGy6G002170 vs. NCBI nr
Match: KAG6578478.1 (hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 3.64e-21
Identity = 58/87 (66.67%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60
          MA LFK +P  FF+F +IL IS SSSSARLLR QSLS   P LKLDIPA  +     EY 
Sbjct: 1  MAKLFK-VPKLFFVFAVILFISASSSSARLLRDQSLSAAVPELKLDIPAALSR----EYG 60

Query: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 84
           L+LGFLPKG  IPPSGPSKGTN+FNT
Sbjct: 61 PLILGFLPKG-RIPPSGPSKGTNDFNT 81

BLAST of CsGy6G002170 vs. NCBI nr
Match: KAG6602588.1 (hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 1.74e-20
Identity = 59/89 (66.29%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSS-ARLLRQQSLSPA----LKLDIPADPAAPTMTE 60
          MANLFK L  F  +  LIL +SVSSSS ARLLR  SLSPA    LKLD PAD       E
Sbjct: 1  MANLFK-LSKFISVLALILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADHTTALAVE 60

Query: 61 YESLLLGFLPKGGSIPPSGPSKGTNNFNT 84
          Y +LLLGFLPKGG IPPSGPSKGTNN N+
Sbjct: 61 YGALLLGFLPKGG-IPPSGPSKGTNNLNS 87

BLAST of CsGy6G002170 vs. NCBI nr
Match: PUZ66583.1 (hypothetical protein GQ55_3G329500 [Panicum hallii var. hallii])

HSP 1 Score: 48.1 bits (113), Expect = 7.12e-05
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 17 LILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLLLGFLPKGGSIPPSGPS 76
          L+LL+S+  SSARLLR      A  +++  +     + +Y SLLL  LP+   +PPSGPS
Sbjct: 20 LLLLVSLRPSSARLLRPTGNDDAAAINVAREVKDAVVDKYASLLLAMLPRA-PMPPSGPS 79

Query: 77 KGTNN 81
           GTN+
Sbjct: 80 GGTND 83

BLAST of CsGy6G002170 vs. NCBI nr
Match: XP_039838918.1 (uncharacterized protein LOC120699117 [Panicum virgatum] >KAG2628468.1 hypothetical protein PVAP13_3KG390100 [Panicum virgatum])

HSP 1 Score: 47.8 bits (112), Expect = 1.01e-04
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 17 LILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLLLGFLPKGGSIPPSGPS 76
          L+LL+S   SSARLLR +    A  +D+  +     + +Y  LLL  LP+   +PPSGPS
Sbjct: 20 LLLLVSRRPSSARLLRPKGNDGAAAIDVAREVKDAVVDKYAPLLLAMLPRA-PVPPSGPS 79

Query: 77 KGTNN 81
           GTN+
Sbjct: 80 GGTND 83

BLAST of CsGy6G002170 vs. ExPASy TrEMBL
Match: A0A0A0K7U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 8.36e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

BLAST of CsGy6G002170 vs. ExPASy TrEMBL
Match: A0A2T7EFH8 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G329500 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.45e-05
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 17 LILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLLLGFLPKGGSIPPSGPS 76
          L+LL+S+  SSARLLR      A  +++  +     + +Y SLLL  LP+   +PPSGPS
Sbjct: 20 LLLLVSLRPSSARLLRPTGNDDAAAINVAREVKDAVVDKYASLLLAMLPRA-PMPPSGPS 79

Query: 77 KGTNN 81
           GTN+
Sbjct: 80 GGTND 83

BLAST of CsGy6G002170 vs. ExPASy TrEMBL
Match: A0A7J0GW62 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0012850 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.98e-05
Identity = 35/75 (46.67%), Postives = 40/75 (53.33%), Query Frame = 0

Query: 18 ILLISVSSSSARLLRQQSL-----SPALKLD----IPADPAAPTMTEYESLLLGFLPKGG 77
          I LI   SSSARLL+  S       P +  D      A+P     + Y  L L  LPKG 
Sbjct: 15 IFLIISQSSSARLLKDSSHPCKMGQPTMSFDPMELAVAEPKR-LRSRYGPLFLSMLPKG- 74

Query: 78 SIPPSGPSKGTNNFN 83
          S+PPSGPSKGTNN N
Sbjct: 75 SVPPSGPSKGTNNMN 87

BLAST of CsGy6G002170 vs. ExPASy TrEMBL
Match: A0A2S3HD85 (Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_3G341700 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.90e-05
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 17 LILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLLLGFLPKGGSIPPSGPS 76
          L+LL+S+  SSARLLR      A  +++  +     + +Y SLLL  LP+   +PPSGPS
Sbjct: 20 LLLLVSLRPSSARLLRPTGDDGAAAINVAREVKDAVVDKYASLLLAMLPRA-PMPPSGPS 79

Query: 77 KGTNN 81
           GTN+
Sbjct: 80 GGTND 83

BLAST of CsGy6G002170 vs. ExPASy TrEMBL
Match: A0A1J7GCE2 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_09556 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 8.30e-05
Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 14  LFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLLLGFLPKGGSIPPS 73
           L  L+ L  +SSSSARLL       A K  +  + A P   +Y  L+L  LPKG  +P S
Sbjct: 46  LLLLLFLFLISSSSARLLNGDISHAATKTTL--NIALPNSGKYMPLILNMLPKG-KVPSS 105

Query: 74  GPSKGTNNFN 83
           GPSK  NNFN
Sbjct: 106 GPSKRVNNFN 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN45830.11.73e-49100.00hypothetical protein Csa_005505 [Cucumis sativus][more]
KAG6578478.13.64e-2166.67hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602588.11.74e-2066.29hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sorori... [more]
PUZ66583.17.12e-0543.08hypothetical protein GQ55_3G329500 [Panicum hallii var. hallii][more]
XP_039838918.11.01e-0443.08uncharacterized protein LOC120699117 [Panicum virgatum] >KAG2628468.1 hypothetic... [more]
Match NameE-valueIdentityDescription
A0A0A0K7U28.36e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1[more]
A0A2T7EFH83.45e-0543.08Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G32950... [more]
A0A7J0GW624.98e-0546.67Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0012850 PE=4 SV=1[more]
A0A2S3HD856.90e-0543.08Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_3G341700 PE=4 SV=1[more]
A0A1J7GCE28.30e-0545.71Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_09556 PE=4 S... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G002170.1CsGy6G002170.1mRNA