CsGy6G001503 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G001503
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Gy14Chr6: 1056500 .. 1056709 (+)
RNA-Seq Expression	CsGy6G001503
Synteny	CsGy6G001503

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGTGGAAAAAGCTAGACAGTCTTTACTTGCCAAAGTCCTTGCGAAATAAATTATATCTAAAGGAAAAATTATCTGGATATAAGATGAACCAAGGTAAAAGCTTAGAAGAGAACCTGGATGAATTTCAAAAGATTATAGTTGGTCTCAATAACATCAGTGAGAAGATGCCGAATGAGAATCAAGCAACGATTCTTTTAAATTAA

mRNA sequence

ATGGAGTTGTGGAAAAAGCTAGACAGTCTTTACTTGCCAAAGTCCTTGCGAAATAAATTATATCTAAAGGAAAAATTATCTGGATATAAGATGAACCAAGGTAAAAGCTTAGAAGAGAACCTGGATGAATTTCAAAAGATTATAGTTGGTCTCAATAACATCAGTGAGAAGATGCCGAATGAGAATCAAGCAACGATTCTTTTAAATTAA

Coding sequence (CDS)

ATGGAGTTGTGGAAAAAGCTAGACAGTCTTTACTTGCCAAAGTCCTTGCGAAATAAATTATATCTAAAGGAAAAATTATCTGGATATAAGATGAACCAAGGTAAAAGCTTAGAAGAGAACCTGGATGAATTTCAAAAGATTATAGTTGGTCTCAATAACATCAGTGAGAAGATGCCGAATGAGAATCAAGCAACGATTCTTTTAAATTAA

Protein sequence

MELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNENQATILLN*

Homology

[Close]

BLAST of CsGy6G001503 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.9e-07
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 3   LWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNEN 62
           +W +L+SLY+ K+L NKLYLK++L    M++G +   +L+ F  +I  L N+  K+  E+
Sbjct: 84  IWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEED 143

Query: 63  QATILLN 70
           +A +LLN
Sbjct: 144 KAILLLN 150

[Close]

BLAST of CsGy6G001503 vs. NCBI nr
Match: TYK11792.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK13825.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 4.51e-27
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 2   ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
           ELWKKL+SLYL KSL NK+Y+KEK  GYKM+Q KSLEENLDEFQKI+V LNNI EKM +E
Sbjct: 82  ELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDE 141

Query: 62  NQATILLN 69
           NQA ILLN
Sbjct: 142 NQAAILLN 149

[Close]

BLAST of CsGy6G001503 vs. NCBI nr
Match: TYK10340.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 5.99e-26
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 2   ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
           ELWKKL+SLYL KSL NK+Y+KEK  GYKM+Q KSLEENLDEFQKIIV LNNI EKM +E
Sbjct: 82  ELWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENLDEFQKIIVDLNNIGEKMSDE 141

Query: 62  NQATILLN 69
           NQA ILLN
Sbjct: 142 NQAVILLN 149

[Close]

BLAST of CsGy6G001503 vs. NCBI nr
Match: KAA0060177.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 1.63e-25
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2   ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
           ELWKKL++LYL KSL NKLYLKEK  GYKM+Q K LEENLD+FQKIIV LNNISEKM +E
Sbjct: 82  ELWKKLENLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEKMSDE 141

Query: 62  NQATILLN 69
           NQ  ILLN
Sbjct: 142 NQVVILLN 149

[Close]

BLAST of CsGy6G001503 vs. NCBI nr
Match: TYK04234.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 6.49e-25
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2   ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
           ELWKKL++LYL KSL NKLYLKEK  GYKM+Q K LEENLD+FQKIIV LNNISE+M +E
Sbjct: 82  ELWKKLENLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDE 141

Query: 62  NQATILLN 69
           NQ  ILLN
Sbjct: 142 NQVVILLN 149

[Close]

BLAST of CsGy6G001503 vs. NCBI nr
Match: KAA0037675.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22818.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 9.08e-25
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 2  ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
          ELWKKL+SLYL KSL NK+Y+KEK  GYKM+Q KSLEENL+EFQKI+V LNNISEKM +E
Sbjct: 29 ELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLNEFQKIVVNLNNISEKMSDE 88

Query: 62 NQATILLN 69
          NQA ILLN
Sbjct: 89 NQAIILLN 96

[Close]

BLAST of CsGy6G001503 vs. ExPASy TrEMBL
Match: A0A5D3CQJ5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17264G00020 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 2.18e-27
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 2   ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
           ELWKKL+SLYL KSL NK+Y+KEK  GYKM+Q KSLEENLDEFQKI+V LNNI EKM +E
Sbjct: 82  ELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDE 141

Query: 62  NQATILLN 69
           NQA ILLN
Sbjct: 142 NQAAILLN 149

[Close]

BLAST of CsGy6G001503 vs. ExPASy TrEMBL
Match: A0A5D3CG50 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00150 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 2.90e-26
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 2   ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
           ELWKKL+SLYL KSL NK+Y+KEK  GYKM+Q KSLEENLDEFQKIIV LNNI EKM +E
Sbjct: 82  ELWKKLESLYLKKSLSNKIYIKEKFFGYKMDQSKSLEENLDEFQKIIVDLNNIGEKMSDE 141

Query: 62  NQATILLN 69
           NQA ILLN
Sbjct: 142 NQAVILLN 149

[Close]

BLAST of CsGy6G001503 vs. ExPASy TrEMBL
Match: A0A5A7V025 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold542G00530 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 7.88e-26
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2   ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
           ELWKKL++LYL KSL NKLYLKEK  GYKM+Q K LEENLD+FQKIIV LNNISEKM +E
Sbjct: 82  ELWKKLENLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEKMSDE 141

Query: 62  NQATILLN 69
           NQ  ILLN
Sbjct: 142 NQVVILLN 149

[Close]

BLAST of CsGy6G001503 vs. ExPASy TrEMBL
Match: A0A5D3BZ25 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold758G00080 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 3.14e-25
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2   ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
           ELWKKL++LYL KSL NKLYLKEK  GYKM+Q K LEENLD+FQKIIV LNNISE+M +E
Sbjct: 82  ELWKKLENLYLTKSLPNKLYLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDE 141

Query: 62  NQATILLN 69
           NQ  ILLN
Sbjct: 142 NQVVILLN 149

[Close]

BLAST of CsGy6G001503 vs. ExPASy TrEMBL
Match: A0A5D3DH66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00630 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 4.40e-25
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 2  ELWKKLDSLYLPKSLRNKLYLKEKLSGYKMNQGKSLEENLDEFQKIIVGLNNISEKMPNE 61
          ELWKKL+SLYL KSL NK+Y+KEK  GYKM+Q KSLEENL+EFQKI+V LNNISEKM +E
Sbjct: 29 ELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLNEFQKIVVNLNNISEKMSDE 88

Query: 62 NQATILLN 69
          NQA ILLN
Sbjct: 89 NQAIILLN 96

The following BLAST results are available for this feature:

BLAST of CsGy6G001503 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.9e-07	40.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CsGy6G001503 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11792.1	4.51e-27	77.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10340.1	5.99e-26	79.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060177.1	1.63e-25	77.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04234.1	6.49e-25	76.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0037675.1	9.08e-25	77.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of CsGy6G001503 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQJ5	2.18e-27	77.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CG50	2.90e-26	79.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V025	7.88e-26	77.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BZ25	3.14e-25	76.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DH66	4.40e-25	77.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of CsGy6G001503 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..69 e-value: 1.1E-15 score: 57.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G001503.1	CsGy6G001503.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0042393	histone binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding