CsGy5G030100 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G030100
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRNA-binding protein 7-like isoform X1
LocationGy14Chr5: 33183248 .. 33192573 (-)
RNA-Seq ExpressionCsGy5G030100
SyntenyCsGy5G030100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGCACTATTTTTCAAAAGGATCATTTTATCCGAAACCAAAACATAGGGCCATTTTTCATGTTAAAAAAACTCCTCCACTTCTCTCCTCAACCTTCCGCCCGTCAACCTCCTTCCGATCTCCTGCCTCTCTCTTCTCCGGCCACCATTTCCAAGCACAGATCACGCTACTCCTCCGAAGAACAACCAACAACCAAGCTCCTTCTGATTTACCCGTTCCTGGCGCACCCTACGAAGTGACTCCTCTCCTGAAACCCACGAACGAGCGAAACACTCTAAATTCCTTTCGAACTTAGCCTGTGGTGTTCGGTTTTGTGAAATTGAACACAATTAAAGAACTTCTGGCTTCCTTTTTTGGTAAGTTTTAAGTGAGTAAACACTCTAAATTTCTTTCGAACTTCAATAGAGTGGTTTAGAATTATCCCCAACACTTCGAAAAATCTTGTTTGTAGAGACTGCGATTTACTGATTTGATGAACTTTTTTGAAATACTAATGGGGAATATAGTTGAAATGCAAACCACAATGGGAGAATCGAAATCGAAGCGATACTAAATAAAGGTTTATTGGGTTACTTTTTCTTATCTTTCCTTTTTGCTGCTGAACTTGCAGAGTAATCATGTCAGGAAGGTCAAATGGATGCACCATTTACATTGGTAAGTTTGTTATTATCTGTATCTAACTATCTTAATTCATGTTCTTTGTACTCTAATTTGTTTTTCTTTCATGAGGATTCTGTTTGCGGGTTAAGCTCCATGTTTTTACTTCTGTGAAGCTTCTAGTGAAAATTATGATCTTGAGTGGTTGGTTTTATAATAGTTGTGTTTATTTCTTTCTATTATGATTTGCTATTGGATGTATATGACACATGGCATTTGACATGTTTGTTGCTTCTCTCACACTATTGGATTTCTTCCTCTCCAACCTTTTCCTCTTTTGTAAATATGTTTGATTTCTCTTTATATCATTATTGATTTGGTGCCTTTGGTGAAGAGAGTTGATAGTTAACTTCTTTTTGTTTTTCATTGATCTCTTAGATTTTCTTCATTTTTGCTTTAATTGGTACAATCTAAAATTTTCACTTTCACCATCGTCTTTGATCTGCTTCTATGTGGGCTTTACCTATTTGAGTATTGCCGCCAGTTTGTCTGTAATATTTCTCTAACATAACTGGTTGTTCGGTGAACTTAATTTTTTGGGAAAATTTTCTTCCCCGTTTGTACTTGATACAATGTTATCTATTAAGTTTTAAGGATGCAGTCTACTTGAATTTTAGATGCCACATATTTATCTGAATTTGATTTTGTTACTTTCTTCACATTTTTTAGGTAATTTGGATGAAAAAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAGCCTAAGGGTTTTGCTTTTGCAGAGTATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATGTCATTTTTATTTCCTTCTCAACTAAATTTTTTCATTTTATCTCCATGTTTCTTGATGAACTTTGTATTCTATTCGAACGTGTACGTTTGCATGCATATATATTTGCTTTATGATCCAGTATCATGTTGTACACCATCTCCTCTAATTTGATCCATTTTGCTCAGTAACTCAGGTTTTGATCTATATAGTGTCTATTAAAATGTGAGGTGCATTTGAAATTTTTTACCTTTTGTTTTATCTTTAATTAAAAAACCAAGCCTACAAAAAGAGGAAGCTCCCCCTACAAAGAGAGATAGACTAAAATCTCAATCTATAGATGCTTTCCTTTTGATACATTATCGTTTACTGGCAGCTCATTCCAATTTTATAATCAGATAATTGTGTAATCTTCTTGTAGCATCTATGATTGTGAATTGTTTAGTGGGGTACTAAGTTATGGAAATGACACATTGTTTTTGACATTGTGCGAGCAGGTATCTGGGCAAGACAAGCCTTCACCTGGTAGCAATGCAATCACTTCATCATCGAGGTCGCATGAAATATCTCAGTATTCCAATCGCTTTTCCCCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGGTGATTTTTCTTACTTTTCTTTATTTTTGTCTTTGTGTTAGTTTGCTAAAAAATTGTGTGTTTGTACTTTATTGGCCTTTTTCCACATAGCTCAACAAACTTTTATTTCTTTTATTCAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCTGTAGATTATCCTCCTTACTAACTTTTGAACTAATGCAGCCAGTGCCGTCCATTGTGGTTAATCTTAATGATAATATAAGTGTTAGGAAAAGTTGGACCTCTTAGATGGTTGTAGATGGTTTGGAGGAAAATGATGCGATATTTGGCTATTTGCTACGGTGCCTGCTAGCTTATGTTATTGAATACGTTGTCATTTTGCCAGGATTATGTGTTCATATGATTTGGCTATGTTGTTGTAAACTTATAGTTGATACCCTAACTAAGTATTGTAACCTATTTGATTAAATATTCAGATTTTCTATAATTCATGTTTAATGTTATTATAAACGATATTTCCAAGGTGACTGAAAAAGTTTGTGTATGTTGAGTCTTTACTTTCTTCTGAAGTGTTTTACTTGAGCCAATATATAAATACCATTTAGCATTTTGGTTTTAGCAAAGTGAAAGCTAATATTACATGTAAAACCAGGCATTTTGGTTTGCCATTTCTGCGTTTGGGTATGCCTGTAGGCTGTACTGAAATTCTTGGAAGGTTAAGTCGTATGTTATTGTCCAACTTTGCATTTTTTAGACCTAGTTGATTTCATTACGTTTAGTTTACCTCTAATTTTTAATAATCTAAAAATTCAAGAATCTAAAATACCCTTTCTTATTTGGGCTCAAAGTTCATATTTGGAAATTGGAATTGTGAGTACAAGTGTAGTACAACAAGAGAGAATGAGAATGAGGATTTGAACCTCTAACCTCAAGGAAATGATACAACTCAATTACCATAGAGCTATATTTACTTTCCCATTAGTTTTACTATTCTTTCTATTGTAATATGAATTTGTTCGTTTTCTTTTATTCTGCCTTTGTATTGGTGTTGTGAGACCTGTTTTTGATGTTTGTTGTTGTGTATGATAAACGACCTATCTTCGATTGCTTTGTAAGATTTGGGATAAGTTGATATAGTCAGTTTTAGTAAGCAAGTAGTGTTTCTAACTGAAATGCTTTTGTATGAAGCACGAGTGGAGAACAGTACATCTATTAAGTGCTTTGTTCAAAAGGGTGTGTTGTAGTACAGAAATTAAATCAGAATGAAAAGAGTGGTATCGTACTGGATGGGATGAAGGCTCTCACTATCTCTGGCTGTATAGGTTAAAATACTACGGTACACAAGTTTACTTGTATGAAATACATATGTGATGTCATTGTTAATTATTATAGTTAATGAGATAATTATTAGTGTTTGGAGTGAGTTTGTGTTAAAAAATAAAATGAGAGGATGAGTGAAAATAGTAAATACGGTAACATATATGGTCTTAGTTTTATTTAATATATTTAATCGTAGGATATAAGTAGTTGCACACTTCACTTTTATATGTGGTGCTCTAAGTAAGGTGTAGGCTTTGAAACCAACTTCTATTAGCATAAGCATATGCGGTTTGTTCCTTGAAGAAGATCACTTTTGTGCCATCTTCCATGTAATTCTCTTAGGATTGTTTAACAATCCGACTTCAACGGTAGCAACAGGAGCCGTTTATTAAATAACGAAGAAAATCTCGAGCTCATATCGGTCATGAGTATGAGTTCAAGAAGCTTGGGCATAGAAGAAGATTTTATAAAGCTGTGTTTTCGTATGTTGGTAATGTTGTACGATGGTCGCTAAATATAGTTGGAATTAGTTAAATATTTGTTATTTTTCTTTTTCATTCAAGTTATGATGGAAACTTTGTTCCATTATTACTTAATTTTTCTAATTTATGTTTGTTTACTTGCAATAGTCTACATTTTATAGTTGACATCTAGAGCCTATATTTAGTAGGAAAGCTAAAATTAAAATTTAAAATCAACGTATCAAATGAAAAAAAAGTTTTATTTTATGTTTTTAAATATGTGTATGGTAGTAAATTTATAAATTGGATTCTAATTTCAACCATAAGTATAAAAGATGTGTTTGATATCAATTTATA

mRNA sequence

ATTGCACTATTTTTCAAAAGGATCATTTTATCCGAAACCAAAACATAGGGCCATTTTTCATGTTAAAAAAACTCCTCCACTTCTCTCCTCAACCTTCCGCCCGTCAACCTCCTTCCGATCTCCTGCCTCTCTCTTCTCCGGCCACCATTTCCAAGCACAGATCACGCTACTCCTCCGAAGAACAACCAACAACCAAGCTCCTTCTGATTTACCCGTTCCTGGCGCACCCTACGAAGTGACTCCTCTCCTGAAACCCACGAACGAGCGAAACACTCTAAATTCCTTTCGAACTTAGCCTGTGGTGTTCGGTTTTGTGAAATTGAACACAATTAAAGAACTTCTGGCTTCCTTTTTTGAGTAATCATGTCAGGAAGGTCAAATGGATGCACCATTTACATTGGTAATTTGGATGAAAAAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAGCCTAAGGGTTTTGCTTTTGCAGAGTATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTGGTAGCAATGCAATCACTTCATCATCGAGGTCGCATGAAATATCTCAGTATTCCAATCGCTTTTCCCCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCTGTAGATTATCCTCCTTACTAACTTTTGAACTAATGCAGCCAGTGCCGTCCATTGTGGTTAATCTTAATGATAATATAAGTGTTAGGAAAAGTTGGACCTCTTAGATGGTTGTAGATGGTTTGGAGGAAAATGATGCGATATTTGGCTATTTGCTACGGTGCCTGCTAGCTTATGTTATTGAATACGTTGTCATTTTGCCAGGATTATGTGTTCATATGATTTGGCTATGTTGTTGTAAACTTATAGTTGATACCCTAACTAAGTATTGTAACCTATTTGATTAAATATTCAGATTTTCTATAATTCATGTTTAATGTTATTATAAACGATATTTCCAAGGTGACTGAAAAAGTTTGTGTATGTTGAGTCTTTACTTTCTTCTGAAGTGTTTTACTTGAGCCAATATATAAATACCATTTAGCATTTTGGTTTTAGCAAAGTGAAAGCTAATATTACATGTAAAACCAGGCATTTTGGTTTGCCATTTCTGCGTTTGGGTATGCCTGTAGGCTGTACTGAAATTCTTGGAAGGTTAAGTCGTATGTTATTGTCCAACTTTGCATTTTTTAGACCTAGTTGATTTCATTACGTTTAGTTTACCTCTAATTTTTAATAATCTAAAAATTCAAGAATCTAAAATACCCTTTCTTATTTGGGCTCAAAGTTCATATTTGGAAATTGGAATTGTGAGTACAAGTGTAGTACAACAAGAGAGAATGAGAATGAGGATTTGAACCTCTAACCTCAAGGAAATGATACAACTCAATTACCATAGAGCTATATTTACTTTCCCATTAGTTTTACTATTCTTTCTATTGTAATATGAATTTGTTCGTTTTCTTTTATTCTGCCTTTGTATTGGTGTTGTGAGACCTGTTTTTGATGTTTGTTGTTGTGTATGATAAACGACCTATCTTCGATTGCTTTGTAAGATTTGGGATAAGTTGATATAGTCAGTTTTAGTAAGCAAGTAGTGTTTCTAACTGAAATGCTTTTGTATGAAGCACGAGTGGAGAACAGTACATCTATTAAGTGCTTTGTTCAAAAGGGTGTGTTGTAGTACAGAAATTAAATCAGAATGAAAAGAGTGGTATCGTACTGGATGGGATGAAGGCTCTCACTATCTCTGGCTGTATAGGTTAAAATACTACGGTACACAAGTTTACTTGTATGAAATACATATGTGATGTCATTGTTAATTATTATAGTTAATGAGATAATTATTAGTGTTTGGAGTGAGTTTGTGTTAAAAAATAAAATGAGAGGATGAGTGAAAATAGTAAATACGGTAACATATATGGTCTTAGTTTTATTTAATATATTTAATCGTAGGATATAAGTAGTTGCACACTTCACTTTTATATGTGGTGCTCTAAGTAAGGTGTAGGCTTTGAAACCAACTTCTATTAGCATAAGCATATGCGGTTTGTTCCTTGAAGAAGATCACTTTTGTGCCATCTTCCATGTAATTCTCTTAGGATTGTTTAACAATCCGACTTCAACGGTAGCAACAGGAGCCGTTTATTAAATAACGAAGAAAATCTCGAGCTCATATCGGTCATGAGTATGAGTTCAAGAAGCTTGGGCATAGAAGAAGATTTTATAAAGCTGTGTTTTCGTATGTTGGTAATGTTGTACGATGGTCGCTAAATATAGTTGGAATTAGTTAAATATTTGTTATTTTTCTTTTTCATTCAAGTTATGATGGAAACTTTGTTCCATTATTACTTAATTTTTCTAATTTATGTTTGTTTACTTGCAATAGTCTACATTTTATAGTTGACATCTAGAGCCTATATTTAGTAGGAAAGCTAAAATTAAAATTTAAAATCAACGTATCAAATGAAAAAAAAGTTTTATTTTATGTTTTTAAATATGTGTATGGTAGTAAATTTATAAATTGGATTCTAATTTCAACCATAAGTATAAAAGATGTGTTTGATATCAATTTATA

Coding sequence (CDS)

ATGTCAGGAAGGTCAAATGGATGCACCATTTACATTGGTAATTTGGATGAAAAAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAGCCTAAGGGTTTTGCTTTTGCAGAGTATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTGGTAGCAATGCAATCACTTCATCATCGAGGTCGCATGAAATATCTCAGTATTCCAATCGCTTTTCCCCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCTGTAGATTATCCTCCTTACTAA

Protein sequence

MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY*
Homology
[Close]
BLAST of CsGy5G030100 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1  MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+Y+G LDEKVS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]
BLAST of CsGy5G030100 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1  MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+Y+G LDEKVS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]
BLAST of CsGy5G030100 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1  MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+Y+G LDEKVS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]
BLAST of CsGy5G030100 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-13
Identity = 31/78 (39.74%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 4  RSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIY+G LDEKVS+ +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVNLHKRTLK 82
          YA+K+ + ++ L+ + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85

[Close]
BLAST of CsGy5G030100 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-12
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 4  RSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIY+GNLDEKV+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFSGLVNLHKRTLKFAVSGQDK 90
          YA ++ +  V L  + ++   + QD+
Sbjct: 67 YACQILN-QVKLFGKPIRVNRASQDR 91

[Close]
BLAST of CsGy5G030100 vs. NCBI nr
Match: XP_011656074.1 (RNA-binding protein 7 isoform X2 [Cucumis sativus] >KAE8648992.1 hypothetical protein Csa_007721 [Cucumis sativus])

HSP 1 Score: 376 bits (966), Expect = 1.13e-131
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 180

Query: 181 YPPY 184
           YPPY
Sbjct: 181 YPPY 184

[Close]
BLAST of CsGy5G030100 vs. NCBI nr
Match: XP_008459559.1 (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 356 bits (914), Expect = 1.23e-123
Identity = 178/191 (93.19%), Postives = 181/191 (94.76%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRS-------HEISQYSNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSRS       +EISQYSNRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 SPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
           S SCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180

Query: 181 DSSFPVDYPPY 184
           DSSFPVDYPPY
Sbjct: 181 DSSFPVDYPPY 191

[Close]
BLAST of CsGy5G030100 vs. NCBI nr
Match: KAA0039300.1 (RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 332 bits (852), Expect = 7.94e-113
Identity = 167/179 (93.30%), Postives = 170/179 (94.97%), Query Frame = 0 

Query: 13  GNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHKRTLKFAVSGQDKPSPGSNAITSSSRS-------HEISQYSNRFSPSCRFPTYPEN 132
           VNLHKRTLKFAVSGQDKPSP SNAITSSSRS       +EISQY+NRFS SCRFPTYPEN
Sbjct: 163 VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN 222

Query: 133 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 184
           HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY
Sbjct: 223 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 281

[Close]
BLAST of CsGy5G030100 vs. NCBI nr
Match: XP_008459561.1 (PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo] >XP_008459562.1 PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo])

HSP 1 Score: 326 bits (836), Expect = 4.28e-112
Identity = 164/184 (89.13%), Postives = 166/184 (90.22%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSR                FP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSR----------------FP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 168

Query: 181 YPPY 184
           YPPY
Sbjct: 181 YPPY 168

[Close]
BLAST of CsGy5G030100 vs. NCBI nr
Match: XP_038890192.1 (RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890194.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida])

HSP 1 Score: 326 bits (836), Expect = 9.90e-112
Identity = 165/192 (85.94%), Postives = 171/192 (89.06%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIY+GN DE+VS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSS------------RSHEISQ 120
           IANYAVKLFSGLVNLH RTLKFAVSGQDKPSPGSNAITSSS             S+EISQ
Sbjct: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSSISNKSRSQIFSGYSNEISQ 120

Query: 121 YSNRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQP 180
           YSNRFS SCRF TYPENHLEALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT LDS NQP
Sbjct: 121 YSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQP 180

[Close]
BLAST of CsGy5G030100 vs. ExPASy TrEMBL
Match: A0A1S3CAZ4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 356 bits (914), Expect = 5.95e-124
Identity = 178/191 (93.19%), Postives = 181/191 (94.76%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRS-------HEISQYSNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSRS       +EISQYSNRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 SPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
           S SCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180

Query: 181 DSSFPVDYPPY 184
           DSSFPVDYPPY
Sbjct: 181 DSSFPVDYPPY 191

[Close]
BLAST of CsGy5G030100 vs. ExPASy TrEMBL
Match: A0A0A0KXV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 363 bits (931), Expect = 3.11e-122
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPV 179
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFP+
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPM 179

[Close]
BLAST of CsGy5G030100 vs. ExPASy TrEMBL
Match: A0A5A7T7S6 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00940 PE=4 SV=1)

HSP 1 Score: 332 bits (852), Expect = 3.84e-113
Identity = 167/179 (93.30%), Postives = 170/179 (94.97%), Query Frame = 0 

Query: 13  GNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHKRTLKFAVSGQDKPSPGSNAITSSSRS-------HEISQYSNRFSPSCRFPTYPEN 132
           VNLHKRTLKFAVSGQDKPSP SNAITSSSRS       +EISQY+NRFS SCRFPTYPEN
Sbjct: 163 VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN 222

Query: 133 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 184
           HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY
Sbjct: 223 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 281

[Close]
BLAST of CsGy5G030100 vs. ExPASy TrEMBL
Match: A0A1S3CAK8 (RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 326 bits (836), Expect = 2.07e-112
Identity = 164/184 (89.13%), Postives = 166/184 (90.22%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSR                FP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSR----------------FP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 168

Query: 181 YPPY 184
           YPPY
Sbjct: 181 YPPY 168

[Close]
BLAST of CsGy5G030100 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 303 bits (775), Expect = 1.29e-102
Identity = 153/197 (77.66%), Postives = 166/197 (84.26%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYIGNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------------SHEIS 120
           I NYAVKLFSGLV LH RTLKFAVSGQDKPSP S+AITSSS              S+EIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYSNRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQ 180
            YSNR S SCRF  YPENHLEA   PGLVNQ NGYGS+ D++N +YSQRYSGTNLDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRHDSSFPVDYPPY 184
           PKSRRHD+S+PV YPPY
Sbjct: 181 PKSRRHDTSYPVYYPPY 197

[Close]
BLAST of CsGy5G030100 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 164.9 bits (416), Expect = 6.4e-41
Identity = 100/187 (53.48%), Postives = 126/187 (67.38%), Query Frame = 0 

Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG SN CT+YIGN+DE+VSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDK-----------PSPGSNAITSSSRS--HEIS 120
           IA+YAVKLFSGLV+L+ RTLKFA+SGQDK             P S A   S R+  H + 
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQSNSANSGHRARPQSLAFEHSDRAAYHHLE 120

Query: 121 QYSNR-FSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFN 174
           ++S++  SP    P    ++ +    PG+ N     G+ L     EYS+R  G+ LDS N
Sbjct: 121 RFSSQLISPPSPLPL---DYTQEPPPPGVSN-----GASL-----EYSRRVLGSALDSIN 173

[Close]
BLAST of CsGy5G030100 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-14
Identity = 31/88 (35.23%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 4   RSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
           R+   T+Y+G LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSGLVNLHKRTLKFAVSGQDKPS 92
           YA+K+ + ++ LH + ++   + QDK S
Sbjct: 81  YAIKVLN-MIKLHGKPIRVNKASQDKKS 107

[Close]
BLAST of CsGy5G030100 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-08
Identity = 25/70 (35.71%), Postives = 39/70 (55.71%), Query Frame = 0 

Query: 2   SGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEI 61
           SG  +G  +Y+GNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y+S + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  ANYAVKLFSG 72
              A+K   G
Sbjct: 258 VQNAIKSLDG 267

[Close]
BLAST of CsGy5G030100 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-07
Identity = 48/183 (26.23%), Postives = 82/183 (44.81%), Query Frame = 0 

Query: 3   GRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIA 62
           G SN   I++G L   V++        Q G + D+ +  D  + +P+GF F  Y+SEE  
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160

Query: 63  NYAVKLFSGLVNLHKRTLKFAVS-----GQDKPSPGSNAITSSSRSHEISQYSNRFSPS- 122
           +  ++     +N     +K AV         +     N+  +S  S  +++Y+  FSPS 
Sbjct: 161 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 220

Query: 123 -CRFPTYPE-NHLEALLNPGLVNQF-NGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 177
              +   PE  +  A+ N G  + F +GYG  L N+    +Q Y   +   F +P S  +
Sbjct: 221 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIEL-NFEPNQTQNYGSGSSGGFGRPFSPGY 280

[Close]
BLAST of CsGy5G030100 vs. TAIR 10
Match: AT5G47620.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-07
Identity = 48/183 (26.23%), Postives = 82/183 (44.81%), Query Frame = 0 

Query: 3   GRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIA 62
           G SN   I++G L   V++        Q G + D+ +  D  + +P+GF F  Y+SEE  
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160

Query: 63  NYAVKLFSGLVNLHKRTLKFAVS-----GQDKPSPGSNAITSSSRSHEISQYSNRFSPS- 122
           +  ++     +N     +K AV         +     N+  +S  S  +++Y+  FSPS 
Sbjct: 161 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 220

Query: 123 -CRFPTYPE-NHLEALLNPGLVNQF-NGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 177
              +   PE  +  A+ N G  + F +GYG  L N+    +Q Y   +   F +P S  +
Sbjct: 221 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIEL-NFEPNQTQNYGSGSSGGFGRPFSPGY 280

The following BLAST results are available for this feature:
BLAST of CsGy5G030100 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q154271.9e-1339.51Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1[more]
Q8QZY91.9e-1339.51Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1[more]
Q6AYL51.9e-1339.51Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1[more]
Q094429.3e-1339.74Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV... [more]
O141022.7e-1239.53Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC... [more]
BLAST of CsGy5G030100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656074.11.13e-131100.00RNA-binding protein 7 isoform X2 [Cucumis sativus] >KAE8648992.1 hypothetical pr... [more]
XP_008459559.11.23e-12393.19PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 ... [more]
KAA0039300.17.94e-11393.30RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa][more]
XP_008459561.14.28e-11289.13PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo] >XP_008459562.1 ... [more]
XP_038890192.19.90e-11285.94RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-bi... [more]
BLAST of CsGy5G030100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CAZ45.95e-12493.19RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE... [more]
A0A0A0KXV13.11e-12299.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1[more]
A0A5A7T7S63.84e-11393.30RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3CAK82.07e-11289.13RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE... [more]
A0A6J1I8J01.29e-10277.66RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194... [more]
BLAST of CsGy5G030100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10110.16.4e-4153.48RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G18510.13.9e-1435.23RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G37220.12.4e-0835.71RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G47620.16.0e-0726.23RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G47620.26.0e-0726.23RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 9..83
e-value: 9.4E-17
score: 71.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 10..80
e-value: 6.5E-14
score: 51.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 8..87
score: 14.709315
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..91
e-value: 4.6E-19
score: 70.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..106
NoneNo IPR availablePANTHERPTHR13798RNA BINDING MOTIF RBM PROTEIN -RELATEDcoord: 1..116
NoneNo IPR availablePANTHERPTHR13798RNA BINDING MOTIF RBM PROTEIN -RELATEDcoord: 116..182
NoneNo IPR availablePANTHERPTHR13798:SF11OS01G0876500 PROTEINcoord: 116..182
coord: 1..116
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G030100.2CsGy5G030100.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding