CsGy5G028995 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G028995
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Protein of unknown function (DUF3317)
Location	Gy14Chr5: 32422925 .. 32429075 (+)
RNA-Seq Expression	CsGy5G028995
Synteny	CsGy5G028995

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAGGTTAGTTGTATTGTGAGAGTCGGGAGGGTAGTTTTGTAATTCTATGTAGACTGTTTTTTAATTACTTTCCATCCACCGCGAAAGGAAGAAGCTTTTGATTCTCTGAAGCTTCAAGGCAGAGCTCTCGAATCAAGCCTTCCTCAATTCTCATCTCTATCTGTTGCATGAAAGGTAAGACGAATCAGATCACAGAAACATTTTTAATTTGATAATTTCTCGTTGAACTTCATCTTTGGTCTTTCTAATCTGTCGGGACTTCACCATTTTCTGCTTGATTCCTCCCCTAATTCAAGCAAAAGCGAGTATTTCTCCTTCTCTGTAATGACTTATGCAGCGAACGAGCGAAAAAACGCTTCAAAAACTCTTTTTCTGATTCCATTTCCTTCAATGGAAAATGGGGTTTTTCTTCTTTTGAACATTTATGGAACCGGTTCTGTTTCAGAGCTATTAGTTTTCGTGTTTATGGGTTTTTAGATCTGTGTTTGCTTATAGAATTTGACTTTGAAGGAATCCGGAAATAGGAATTTGGGATCCCCCCTTGTGATAAAATTTTACGTTCACTGCTATTTGGCGAAGCTTGATCGGAAGGTTTGGCAGTAAAGCATAGCCTTTCTGATTGATAAACACATCACCTATTGAAGTTTGACTGTACATTATATTTCGAAGTTTCTTTGTTAAACTGCCATACTTATTGATTCATCATCCATTTCCTCATATTTCTATGACCTGAAAATTTTGAATGGTTTTGACTTGGGTGGTTGCTTCTTGCTTGTAGGTTTTCTATAGCCATGAATTGGATACAAAGGAAGATCTACCTTTATAATGTCACATTTGGGTTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAGTATGCTCTCTATCCCAAGGGATATTTGATCTGTTTTATCATTTGCAAGCATGCGTAGTACGTGTTTCAGATAAAGTTATGCCGCCAGTATCTTGTCCAGCCAAATAATTACTGATATTTACTATTTCTTTTGTTGATATTAAGATTTAATATTGATTTTTCATTATTCGAGTTATGTCCTGCTCTGTGGATGATGGATATATGGCTATATGTTATATAATTTTCAATCATGCTTGTTCGGTGTGTCAGTATCTTATGTTAACTGGATTTAGGATTTGTCTAGTTAGATGTTGAATTTCATTGGTTCAATAATTTCTGTGAGATTGAATTTAATTTGTGCAACTCTTTTCTTTTTCTTACTATTGACCTCTTGAATTCTTCAAATATTATTGTAGATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGGTCACGATACGTGAATGATATGTGCAAGAGGTATTGTATTTATCTTTACTCTACCATTTCCTTTTCACAATCGGGAAATAAAATATATATTACAATTGATTGCACATATTGCAGTAGACATTTGATAATCCAACCACCAAAGAAAATATTGTTCCTCTATTTTCATGTGACCTTAGTCCAGCAAAATAAAAACAGTGGTTACATATTTGTTCTTCTTTCTGATTTAATTATAACTGTTTAGACCATTAATTTATAGAAATGCAACATAAAGGGGGAGAATCTAACTCCAAAGGAATCAGAGTAACACAACAGCTCGAAGTACTTTAATTGAGGGATGAGGAGATGATAGTTAGAGAACTCTCTGGAGGGGAAGCTCCAAGAGTAGAATAGCAAAACAGTGTCGCCCCAAATCTTATAGGGTTCATTTCTTTCATTTGTCCTATAAGGATCTCCTGTTATTTGTAACCAACTTTCTGAATAAATAGCCTTATAGTTTCTGAAGATTTATGTTTGGCCAATCCAACCACAAGTTAAAGAACTACATCTTGGAGCAAAATTATGCTATAACGGTCAGGTAGTTTTTTAGTTGGGAACGTCCTCAAAGACAAGAAGGGAAAAAATTATTTTAGTTATCTAAATCTCCTCTCTTATTTTTTTTTGATAAGAGACAAATATATTCATATAACAAAACAGAAC

mRNA sequence

TTTAGGTTAGTTGTATTGTGAGAGTCGGGAGGGTAGTTTTGTAATTCTATGTAGACTGTTTTTTAATTACTTTCCATCCACCGCGAAAGGAAGAAGCTTTTGATTCTCTGAAGCTTCAAGGCAGAGCTCTCGAATCAAGCCTTCCTCAATTCTCATCTCTATCTGTTGCATGAAAGGTTTTCTATAGCCATGAATTGGATACAAAGGAAGATCTACCTTTATAATGTCACATTTGGGTTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGGTCACGATACGTGAATGATATGTGCAAGAGGTATTGTATTTATCTTTACTCTACCATTTCCTTTTCACAATCGGGAAATAAAATATATATTACAATTGATTGCACATATTGCAGTAGACATTTGATAATCCAACCACCAAAGAAAATATTGTTCCTCTATTTTCATGTGACCTTAGTCCAGCAAAATAAAAACAGTGGTTACATATTTGTTCTTCTTTCTGATTTAATTATAACTGTTTAGACCATTAATTTATAGAAATGCAACATAAAGGGGGAGAATCTAACTCCAAAGGAATCAGAGTAACACAACAGCTCGAAGTACTTTAATTGAGGGATGAGGAGATGATAGTTAGAGAACTCTCTGGAGGGGAAGCTCCAAGAGTAGAATAGCAAAACAGTGTCGCCCCAAATCTTATAGGGTTCATTTCTTTCATTTGTCCTATAAGGATCTCCTGTTATTTGTAACCAACTTTCTGAATAAATAGCCTTATAGTTTCTGAAGATTTATGTTTGGCCAATCCAACCACAAGTTAAAGAACTACATCTTGGAGCAAAATTATGCTATAACGGTCAGGTAGTTTTTTAGTTGGGAACGTCCTCAAAGACAAGAAGGGAAAAAATTATTTTAGTTATCTAAATCTCCTCTCTTATTTTTTTTTGATAAGAGACAAATATATTCATATAACAAAACAGAAC

Coding sequence (CDS)

ATGAATTGGATACAAAGGAAGATCTACCTTTATAATGTCACATTTGGGTTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGGTCACGATACGTGAATGATATGTGCAAGAGGTATTGTATTTATCTTTACTCTACCATTTCCTTTTCACAATCGGGAAATAAAATATATATTACAATTGATTGCACATATTGCAGTAGACATTTGATAATCCAACCACCAAAGAAAATATTGTTCCTCTATTTTCATGTGACCTTAGTCCAGCAAAATAAAAACAGTGGTTACATATTTGTTCTTCTTTCTGATTTAATTATAACTGTTTAG

Protein sequence

MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYCIYLYSTISFSQSGNKIYITIDCTYCSRHLIIQPPKKILFLYFHVTLVQQNKNSGYIFVLLSDLIITV*

Homology

[Close]

BLAST of CsGy5G028995 vs. NCBI nr
Match: KAG7016096.1 (hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (322), Expect = 3.30e-36
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYCIYLYS 60
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KRYC+YL S
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRYCVYLCS 60

Query: 61 TISFSQSGN 69
          T S S+S N
Sbjct: 61 TFSSSKSEN 69

[Close]

BLAST of CsGy5G028995 vs. NCBI nr
Match: XP_004141475.1 (uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetical protein Csa_008788 [Cucumis sativus])

HSP 1 Score: 118 bits (295), Expect = 3.36e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

[Close]

BLAST of CsGy5G028995 vs. NCBI nr
Match: XP_008459402.1 (PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_016902393.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo])

HSP 1 Score: 118 bits (295), Expect = 3.36e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

[Close]

BLAST of CsGy5G028995 vs. NCBI nr
Match: XP_038889912.1 (uncharacterized protein LOC120079682 [Benincasa hispida])

HSP 1 Score: 114 bits (284), Expect = 1.59e-30
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+CKR+
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKRH 54

[Close]

BLAST of CsGy5G028995 vs. NCBI nr
Match: XP_022134536.1 (uncharacterized protein LOC111006754 [Momordica charantia])

HSP 1 Score: 112 bits (279), Expect = 7.67e-30
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKR 53
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGS+YVND+CKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSQYVNDLCKR 53

[Close]

BLAST of CsGy5G028995 vs. ExPASy TrEMBL
Match: A0A1S3C9L1 (uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 1.62e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

[Close]

BLAST of CsGy5G028995 vs. ExPASy TrEMBL
Match: A0A6J1BY20 (uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006754 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 3.71e-30
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKR 53
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGS+YVND+CKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSQYVNDLCKR 53

[Close]

BLAST of CsGy5G028995 vs. ExPASy TrEMBL
Match: A0A6J1JYU1 (uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 5.15e-29
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRH 54

[Close]

BLAST of CsGy5G028995 vs. ExPASy TrEMBL
Match: A0A6J1FLX2 (uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC111445419 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 5.15e-29
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRH 54

[Close]

BLAST of CsGy5G028995 vs. ExPASy TrEMBL
Match: A0A6P5SRN0 (uncharacterized protein LOC110758739 OS=Prunus avium OX=42229 GN=LOC110758739 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.54e-27
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNW+QRKIYLYNVTFGLYMLDWWER LFNT+VVVLMWF+FYNGSRYV + CKR+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVVVLMWFIFYNGSRYVTEFCKRH 54

[Close]

BLAST of CsGy5G028995 vs. TAIR 10
Match: AT2G30942.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-21
Identity = 41/54 (75.93%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 55
          MNW+QRKIYLYNVTFGLYMLDWWER LFN++V++LMWF+ YNGSRY +++CKR+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVLILMWFILYNGSRYFSELCKRH 54

[Close]

BLAST of CsGy5G028995 vs. TAIR 10
Match: AT1G06515.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 94.0 bits (232), Expect = 9.2e-20
Identity = 40/54 (74.07%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 55
          MNW+QRKIYLYNVTFGLYMLDWWER LFN++VVVLMWF+ YNG+RY +++ +R+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQRH 54

[Close]

BLAST of CsGy5G028995 vs. TAIR 10
Match: AT1G06515.2 (Protein of unknown function (DUF3317) )

HSP 1 Score: 94.0 bits (232), Expect = 9.2e-20
Identity = 40/54 (74.07%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 55
          MNW+QRKIYLYNVTFGLYMLDWWER LFN++VVVLMWF+ YNG+RY +++ +R+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQRH 54

The following BLAST results are available for this feature:

BLAST of CsGy5G028995 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G028995 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016096.1	3.30e-36	85.51	hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004141475.1	3.36e-32	100.00	uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetica...	[more]
XP_008459402.1	3.36e-32	100.00	PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 P...	[more]
XP_038889912.1	1.59e-30	94.44	uncharacterized protein LOC120079682 [Benincasa hispida]	[more]
XP_022134536.1	7.67e-30	94.34	uncharacterized protein LOC111006754 [Momordica charantia]	[more]

BLAST of CsGy5G028995 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9L1	1.62e-32	100.00	uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=...	[more]
A0A6J1BY20	3.71e-30	94.34	uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1JYU1	5.15e-29	90.74	uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112...	[more]
A0A6J1FLX2	5.15e-29	90.74	uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC1114454...	[more]
A0A6P5SRN0	1.54e-27	85.19	uncharacterized protein LOC110758739 OS=Prunus avium OX=42229 GN=LOC110758739 PE...	[more]

BLAST of CsGy5G028995 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30942.1	2.2e-21	75.93	Protein of unknown function (DUF3317)	[more]
AT1G06515.1	9.2e-20	74.07	Protein of unknown function (DUF3317)	[more]
AT1G06515.2	9.2e-20	74.07	Protein of unknown function (DUF3317)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024512	Small subunit of serine palmitoyltransferase-like	PFAM	PF11779	SPT_ssu-like	coord: 1..51 e-value: 1.2E-23 score: 82.4
None	No IPR available	PANTHER	PTHR33727	OS07G0446900 PROTEIN	coord: 1..53
None	No IPR available	PANTHER	PTHR33727:SF18	PROTEIN, PUTATIVE (DUF3317)-RELATED	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G028995.1	CsGy5G028995.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane