CsGy5G028400 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G028400
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 32017235 .. 32018257 (+)
RNA-Seq Expression	CsGy5G028400
Synteny	CsGy5G028400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATCCCCTCAATGCCTTAGTGCTTTACAATTGTGCAATAAATTTCTTTGGATCTGAAGCCTTTCCCATAATTTCCTTTTCCTTTCCTTGATAACTACAAAACCCTCTCTCTCTCTCTCTCTTTCTGTCTCAAAGTAACAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGTACTCAAACTTCTTCTTCTATTTATTTTCTAATCCTTTTTTCATGTATATTTCTATATATATATTCGTCTCCTGAGCTCACATCGTTTATTTTTAATTTTTTTTCTCAAGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGTGTGATTTTCTTTTTCAACAGTTGATAAAAGGGTATGTTTTTGTTTTAAAATTTTGGAATAATAATAATTTGATTATTGTGTTAACTTAGCAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAATTAATTTGTAATAGTTTTTCTTTTCTTTTTCTAATAAAAAGACCACAGCTAATAATATATATTGTTTAATTTCTGTGAGGTTTTTCATATCTAAGATATATTATGAATATTATTTTTCTTTTAACTTATTTATTCCAAGTGTAATTCATGCATGGTGGTGAGATAAATTGGAGGTTTTGTTGTCTTTTACTCATTGGTGAACTTCCACTCAATTTCCCTTGTATGTTAAGAAAAATAATAATGGGAAGGGACCCATTTCTTCCCTGCTCAAAGTTATTAAATACAAAAATTCAAAATTACTTGTTTAGAAAATGAACTAAAATATTTATGAAATTTAGAAGGGTGGGAATCGATACCATTTCTTTCTGTCACTAGTTAAAATTATTGGA

mRNA sequence

CTTATCCCCTCAATGCCTTAGTGCTTTACAATTGTGCAATAAATTTCTTTGGATCTGAAGCCTTTCCCATAATTTCCTTTTCCTTTCCTTGATAACTACAAAACCCTCTCTCTCTCTCTCTCTTTCTGTCTCAAAGTAACAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGTACTCAAACTTCTTCTTCTATTTATTTTCTAATCCTTTTTTCATGTATATTTCTATATATATATTCGTCTCCTGAGCTCACATCGTTTATTTTTAATTTTTTTTCTCAAGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAATTAATTTGTAATAGTTTTTCTTTTCTTTTTCTAATAAAAAGACCACAGCTAATAATATATATTGTTTAATTTCTGTGAGGTTTTTCATATCTAAGATATATTATGAATATTATTTTTCTTTTAACTTATTTATTCCAAGTGTAATTCATGCATGGTGGTGAGATAAATTGGAGGTTTTGTTGTCTTTTACTCATTGGTGAACTTCCACTCAATTTCCCTTGTATGTTAAGAAAAATAATAATGGGAAGGGACCCATTTCTTCCCTGCTCAAAGTTATTAAATACAAAAATTCAAAATTACTTGTTTAGAAAATGAACTAAAATATTTATGAAATTTAGAAGGGTGGGAATCGATACCATTTCTTTCTGTCACTAGTTAAAATTATTGGA

Coding sequence (CDS)

ATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGTACTCAAACTTCTTCTTCTATTTATTTTCTAATCCTTTTTTCATGTATATTTCTATATATATATTCGTCTCCTGAGCTCACATCGTTTATTTTTAATTTTTTTTCTCAAGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAA

Protein sequence

MVHPKLFSTLLLLSCFLLLSFTHGTQTSSSIYFLILFSCIFLYIYSSPELTSFIFNFFSQGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPSPAT*

Homology

[Close]

BLAST of CsGy5G028400 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_007886 [Cucumis sativus])

HSP 1 Score: 152 bits (384), Expect = 2.01e-45
Identity = 86/123 (69.92%), Postives = 86/123 (69.92%), Query Frame = 0


Query: 1   MVHPKLFSTLLLLSCFLLLSFTHGTQTSSSIYFLILFSCIFLYIYSSPELTSFIFNFFSQ 60
           MVHPKLFSTLLLLSCFLLLSFTHG                                    
Sbjct: 1   MVHPKLFSTLLLLSCFLLLSFTHG------------------------------------ 60

Query: 61  GLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 120
            LKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS
Sbjct: 61  -LKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 86

Query: 121 PAT 123
           PAT
Sbjct: 121 PAT 86

[Close]

BLAST of CsGy5G028400 vs. NCBI nr
Match: KAA0039487.1 (hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK15242.1 hypothetical protein E5676_scaffold892G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 8.48e-23
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 66  MIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRS-GYLNPPPPPS 120
           MIESLGHGSNVR S SLKGIGGKSRKMMIEIMDYADPGPN NTRS GYL PPPPP+
Sbjct: 1   MIESLGHGSNVR-SSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPA 55

[Close]

BLAST of CsGy5G028400 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 3.80e-13
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 61  GLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP--PP 120
           G  V  +E+  H +   IS S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP  PP
Sbjct: 16  GFGVGAMEAAAH-AGCDISSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPP 75

Query: 121 PSPAT 123
           P P++
Sbjct: 76  PPPSS 79

[Close]

BLAST of CsGy5G028400 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.4 bits (163), Expect = 5.97e-12
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 61  GLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP--PP 120
           G  V  +E+  H +   IS S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP  PP
Sbjct: 16  GFGVGAMEAAAH-AGCDISSSQKS-GGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPP 75

Query: 121 PSPAT 123
           P P++
Sbjct: 76  PPPSS 78

[Close]

BLAST of CsGy5G028400 vs. NCBI nr
Match: KAG6602500.1 (hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033174.1 hypothetical protein SDJN02_07228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.1 bits (157), Expect = 5.16e-11
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 57  FFSQGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP 116
           F   G  V  +E+  H      S S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP
Sbjct: 14  FIILGFGVGAMEAAAH-PGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPP 72

[Close]

BLAST of CsGy5G028400 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 9.73e-46
Identity = 86/123 (69.92%), Postives = 86/123 (69.92%), Query Frame = 0


Query: 1   MVHPKLFSTLLLLSCFLLLSFTHGTQTSSSIYFLILFSCIFLYIYSSPELTSFIFNFFSQ 60
           MVHPKLFSTLLLLSCFLLLSFTHG                                    
Sbjct: 1   MVHPKLFSTLLLLSCFLLLSFTHG------------------------------------ 60

Query: 61  GLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 120
            LKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS
Sbjct: 61  -LKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 86

Query: 121 PAT 123
           PAT
Sbjct: 121 PAT 86

[Close]

BLAST of CsGy5G028400 vs. ExPASy TrEMBL
Match: A0A5D3CUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00160 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.11e-23
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 66  MIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRS-GYLNPPPPPS 120
           MIESLGHGSNVR S SLKGIGGKSRKMMIEIMDYADPGPN NTRS GYL PPPPP+
Sbjct: 1   MIESLGHGSNVR-SSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPA 55

[Close]

BLAST of CsGy5G028400 vs. ExPASy TrEMBL
Match: A0A0A0LCS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.47e-07
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 56  NFFSQGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNP 115
           N F + L++ ++E L    N R+   L+  G K R M +E MDYADP PNTN + GY++P
Sbjct: 23  NGFGRNLRM-VVEPLDSHHNSRVL--LEESGRKWRMMKMETMDYADPEPNTNVKGGYVSP 82

Query: 116 PPPPS 120
           PPPP+
Sbjct: 83  PPPPN 84

[Close]

BLAST of CsGy5G028400 vs. ExPASy TrEMBL
Match: A0A059AEU1 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01355 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.44e-06
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 86  GGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPSP 121
           GGK RKM +E+MDY+DP PNTN RSGYL  PPPP P
Sbjct: 55  GGKWRKM-VEVMDYSDPEPNTNPRSGYLLSPPPPPP 89

[Close]

BLAST of CsGy5G028400 vs. ExPASy TrEMBL
Match: A0A498HG62 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.22e-06
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 58  FSQGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPP 117
           FS G   +++E+  HG +  +  S +   GKSRKM I +MDYADP PN N R+GY+  PP
Sbjct: 20  FSHGFGRKLVETAEHGEDSSVLVSREN-HGKSRKM-ITMMDYADPEPNVNPRTGYIFTPP 78

The following BLAST results are available for this feature:

BLAST of CsGy5G028400 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G028400 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52468.1	2.01e-45	69.92	hypothetical protein Csa_007886 [Cucumis sativus]	[more]
KAA0039487.1	8.48e-23	89.29	hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK1524...	[more]
XP_023527249.1	3.80e-13	58.46	uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023527257.1	5.97e-12	58.46	uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG6602500.1	5.16e-11	56.67	hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy5G028400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSB7	9.73e-46	69.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1	[more]
A0A5D3CUT5	4.11e-23	89.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LCS0	4.47e-07	46.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1	[more]
A0A059AEU1	1.44e-06	72.22	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01355 PE=4 SV...	[more]
A0A498HG62	2.22e-06	47.54	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1	[more]

BLAST of CsGy5G028400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..123
None	No IPR available	PANTHER	PTHR37908:SF3	TRANSMEMBRANE PROTEIN	coord: 51..121
None	No IPR available	PANTHER	PTHR37908	TRANSMEMBRANE PROTEIN	coord: 51..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G028400.2	CsGy5G028400.2	mRNA