CsGy5G026803 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G026803
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Aquarius
Location	Gy14Chr5: 30567085 .. 30568276 (+)
RNA-Seq Expression	CsGy5G026803
Synteny	CsGy5G026803

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGATCTTTGAATTTGACCCAATTCTACATCTGCTTCAAACTTCCTCTGATCTGTATCATAGCATGACGATTATATGATCCATATCAGTTCTAAAAACTAACCAAAAACACAGTAGCTCTTCTTACAAAATCTCAATCGTGTTTACTATTTACTTTTCAAACTAATATGGTTTATACTTCAAACACGTATTACTAGCTTTAAACACCACTTGGTTGTTTGAAGTCGGTGAGTTCAAGTATCTTTACCCCTCAAATCAAGTAAACATCAATTTTAAACTTTAAAATTTGCAACTAAATTAATAAATTTAACCAAATTAATATATATAGTGATTCTAAAAAAATTACAAAAAGTAGAAAGATAACAGTGTCGGTTTATGTCTTATAGTTTATAATTATTATTATTGTTTTGTAATATTATATATTGATATTCAAAATGTATGTCTTATAGTTTATAATTAGAATTTATGGATAAAGTTATATCAATCAAAATTAAAACATAAATTTTAAAATCATATGAATACTTTTTAAGTTTTATCCAAATCATTGGAACCAAAATTAGAATTTAACCTAATTTAATTTATAAAACATTACATAATACATATTTTAAGTTAAAAATGATTGAATTGGATTTATAAACTAACATACAATATTTGTAAATATTTAATCTTCACGAGCTTCAATTCACGCCGCCTCACAACATCTCTGCGACACCGATTCTCCCTCTCGTCTTGGCTTCTTATCCCACACAGTCGCCGGCGTTACCCTCTCCCTCTCGTCTCGGCTTCTCCTTCTCGGTGTCCGTCGCCGACGGTTTCTCATTTCATTTTCTCCGCTGGCGTTCTCTCAGTCTACCTCTCGGACTTCATGTTAGTGATAATTTATTTTGAGCATTTTTTCTACATTTAGAAGTTACTAGTTTTTGTGTTGATGCTGAGTAGTTTGTGTTGATGCTTAATAGTTTTTGTGTTGATGCTTAATAGTTTTTGTGTTGATGCTTAATAGTTTCTGTGTTGATGCTTAATAGTTTCTGTGTTGATGCTTAATAGTTTTTGTGTTGATGCTTAGTATTTAAAAGTTACTATCTCCCTCTCGGTTTGCTGTTGATGCTTAGTATTCAAGAACAGTGATTCTTTCTTCATCTTCTCCTTGTTTCCGCAGCCCATTTTTTGACACGCTGCATCCTTTGA

mRNA sequence

ATGAGTAGATCTTTGAATTTGACCCAATTCTACATCTGCTTCAAACTTCCTCTGATCTCTTCAATTCACGCCGCCTCACAACATCTCTGCGACACCGATTCTCCCTCTCGTCTTGGCTTCTTATCCCACACAGTCGCCGGCGTTACCCTCTCCCTCTCGTCTCGGCTTCTCCTTCTCGGTGTCCGTCGCCGACGGTTTCTCATTTCATTTTCTCCGCTGGCGTTCTCTCAGTCTACCTCTCGGACTTCATCCCATTTTTTGACACGCTGCATCCTTTGA

Coding sequence (CDS)

ATGAGTAGATCTTTGAATTTGACCCAATTCTACATCTGCTTCAAACTTCCTCTGATCTCTTCAATTCACGCCGCCTCACAACATCTCTGCGACACCGATTCTCCCTCTCGTCTTGGCTTCTTATCCCACACAGTCGCCGGCGTTACCCTCTCCCTCTCGTCTCGGCTTCTCCTTCTCGGTGTCCGTCGCCGACGGTTTCTCATTTCATTTTCTCCGCTGGCGTTCTCTCAGTCTACCTCTCGGACTTCATCCCATTTTTTGACACGCTGCATCCTTTGA

Protein sequence

MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL*

Homology

[Close]

BLAST of CsGy5G026803 vs. NCBI nr
Match: KGN52296.1 (hypothetical protein Csa_008219 [Cucumis sativus])

HSP 1 Score: 178 bits (451), Expect = 4.17e-56
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG 60
          MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG
Sbjct: 1  MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG 60

Query: 61 VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL 92
          VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL
Sbjct: 61 VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL 92

[Close]

BLAST of CsGy5G026803 vs. NCBI nr
Match: KAA0034743.1 (aquarius [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 6.40e-12
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 34   SPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSS 84
            S SRLGF SH VAG+TLSLSSRLLLL VRR R LIS SP AFSQSTSRTSS
Sbjct: 1595 SLSRLGFSSHAVAGLTLSLSSRLLLLSVRRPRLLISPSPPAFSQSTSRTSS 1645

[Close]

BLAST of CsGy5G026803 vs. NCBI nr
Match: TYK09296.1 (aquarius [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 6.40e-12
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 34   SPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSS 84
            S SRLGF SH VAG+TLSLSSRLLLL VRR R LIS SP AFSQSTSRTSS
Sbjct: 1608 SLSRLGFSSHAVAGLTLSLSSRLLLLSVRRPRLLISPSPPAFSQSTSRTSS 1658

[Close]

BLAST of CsGy5G026803 vs. NCBI nr
Match: ADN34203.1 (aquarius [Cucumis melo subsp. melo])

HSP 1 Score: 71.2 bits (173), Expect = 6.41e-12
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 34   SPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSS 84
            S SRLGF SH VAG+TLSLSSRLLLL VRR R LIS SP AFSQSTSRTSS
Sbjct: 1808 SLSRLGFSSHAVAGLTLSLSSRLLLLSVRRPRLLISPSPPAFSQSTSRTSS 1858

[Close]

BLAST of CsGy5G026803 vs. ExPASy TrEMBL
Match: A0A0A0KWV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623600 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 2.02e-56
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG 60
          MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG
Sbjct: 1  MSRSLNLTQFYICFKLPLISSIHAASQHLCDTDSPSRLGFLSHTVAGVTLSLSSRLLLLG 60

Query: 61 VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL 92
          VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL
Sbjct: 61 VRRRRFLISFSPLAFSQSTSRTSSHFLTRCIL 92

[Close]

BLAST of CsGy5G026803 vs. ExPASy TrEMBL
Match: A0A5A7SW59 (Aquarius OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007660 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.10e-12
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 34   SPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSS 84
            S SRLGF SH VAG+TLSLSSRLLLL VRR R LIS SP AFSQSTSRTSS
Sbjct: 1595 SLSRLGFSSHAVAGLTLSLSSRLLLLSVRRPRLLISPSPPAFSQSTSRTSS 1645

[Close]

BLAST of CsGy5G026803 vs. ExPASy TrEMBL
Match: A0A5D3CG09 (Aquarius OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002920 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.10e-12
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 34   SPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSS 84
            S SRLGF SH VAG+TLSLSSRLLLL VRR R LIS SP AFSQSTSRTSS
Sbjct: 1608 SLSRLGFSSHAVAGLTLSLSSRLLLLSVRRPRLLISPSPPAFSQSTSRTSS 1658

[Close]

BLAST of CsGy5G026803 vs. ExPASy TrEMBL
Match: E5GCK6 (Aquarius OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.10e-12
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 34   SPSRLGFLSHTVAGVTLSLSSRLLLLGVRRRRFLISFSPLAFSQSTSRTSS 84
            S SRLGF SH VAG+TLSLSSRLLLL VRR R LIS SP AFSQSTSRTSS
Sbjct: 1808 SLSRLGFSSHAVAGLTLSLSSRLLLLSVRRPRLLISPSPPAFSQSTSRTSS 1858

The following BLAST results are available for this feature:

BLAST of CsGy5G026803 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G026803 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52296.1	4.17e-56	100.00	hypothetical protein Csa_008219 [Cucumis sativus]	[more]
KAA0034743.1	6.40e-12	82.35	aquarius [Cucumis melo var. makuwa]	[more]
TYK09296.1	6.40e-12	82.35	aquarius [Cucumis melo var. makuwa]	[more]
ADN34203.1	6.41e-12	82.35	aquarius [Cucumis melo subsp. melo]	[more]

BLAST of CsGy5G026803 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWV6	2.02e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623600 PE=4 SV=1	[more]
A0A5A7SW59	3.10e-12	82.35	Aquarius OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007660 PE=4 ...	[more]
A0A5D3CG09	3.10e-12	82.35	Aquarius OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002920 PE=4...	[more]
E5GCK6	3.10e-12	82.35	Aquarius OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of CsGy5G026803 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G026803.1	CsGy5G026803.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0004386	helicase activity