CsGy5G025380 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G025380
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA repair REX1-B protein
LocationGy14Chr5: 29634743 .. 29637005 (-)
RNA-Seq ExpressionCsGy5G025380
SyntenyCsGy5G025380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATTTTGAGAAGAAGCTCTCTCTCGATGAACAAATGGAGGAAGATCGGAAAACCGATTCCTCTAACACTCTCTCTTTGCTCCGCCAGTTTCTCGAAATCCAGCAGCGTAGAGCTGAAGCTTATTCCAAGCTTAAAAGGTACTATTGATTTTGGTTCTCGATTTCGTTTTCCTTTGAAATTTTGATAGCTGTTCTTCAAAAGAAATGAAGAATTCGATCATTCGAGTTATATGTATGTGTTTAACTTCTGTTTTACTGTTTTTCCACGCCGCATGATTTTATCCTAAACCTCGTTTAATGTACATTTGCTTTCGCAGTAGGTCCATACAGATCGATGATTATAAAATCGTGAACGAATTCTGTTAGTCTTAGTCCTAAACGAGCTTAGCGACGAAGTTTCGAGTGTATTTTTGCGAATTATCTATGGAATCTTTTAAGTCTTTATCGTTTTGTTAATTCGCAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTTTGCAGTGAGATCACTACGGAATTCAGTAATTGCTCTAAACAAGTTCGTTGCACGATTTTCACAGTATTTCGTTGAGGCGTGCTGTTCTTTAAGCTTCTTTGTGAGATTTTCCTTTTTGGACTCTCTTTTGTTGTAGGTCATTGACATCGAATCGAATTTCCGGAGTTCAGATCATAACAGGCTCGAGTTAGCCAACCAGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGGTATGTCATGACCAGAAAGTTCTCTAGAAAATTTTGGATTTATTTTTTGGCAGCATCCTTTCCTCCTCTGCGAAGATTAAGTTTGGCTAATTGTATAATTTTAGACTTCAAAACCATACGGTGCTTTCATTCAATCGCAATCAGTCAGTTAGACTTGTAATTCTAAAAATTGCTGAAAATTAGTAGGATTGCTGATTGCTAAGTATGGAAATAAGGCATAAATGTTTATCACATTAAGACAACAATCCTTAAGGCGTAAGATACAAAAGACCTTTGAAACGTTGTTCAGACAGAAACTCTACCTATTGGTAAATCTAAATTGTGTAAAGCATCATATTCTAAAGTCCAAGCTCCAATTCTATCGAATTGAAGTAAGATGGATATTCGGTTCACATTTTCTTAGGAATTCTAGATTTGGTACAAGTATCATTTTATATTTAACAGTAAAATGGTTGTTCTTATGCATGTTAATAGAAATATTGATAAACCTTCACATCAATGGATATATGGAAATATTCAATGAAATGTTTCTTATCTAAAAAAATGGATATATATAAATATTGATATGTCGATTGATGTATAAACCTTGAAGCTTAAGCTTGATTCCTAGTTTATTTGTGGATTCCTTTATTGTGTCTGTCATGTCAACAAGAAAGTTACCTCAAGTGGATTTGAGTGATCGCTCTTCAATATCCATCAATGATGCACTGGTTTTCCTTTAACTCTATCTTATTATCCATCCAAACAAGTTTTGAGCACGAGCAAAAGTCATGTTCTACCGATCATTTCATCAAAGAATTCTAGCCAGAAAAATGCAGGGTATAGGAGATAAGATAATGGCATTGGTGGTGAGGAATTTTAACCATCTAAACTGCATTGAACCAACTTTTCTTTGTATTACAATGAGCTGCATCTCTAGAATTTAGTCTTGGAAGGAAATGATTCTAATTCTGTTATTCTCCACTCATCAGATTATTATTTTCTGTGTTTAAAAGCAGCTTTAACGAACTTTTCTAGATGTGAAATGACACCTTGATTTCCCCCTTTTCCTCTTTAAATTGCTGAACTCAATGACGTAGATTTTCATTTAACTGCCCAAGTTCTTCAGTAGTGGTATGTTAGCTTACCTTTGAATGCTTTCTCACTTGTCAATGAATGTGCTTTTGTTGGACATAAAGTTTAGTAGTTGAGTGATCTTGGATTATCTTCACCTAACTATTATCTCTTTAAAGACAGCTCAAATTCAGTTATTGAAGAAAGCTGGCCGCCCATCAGAGCGCTTGGTGAGCCACGAGAATTGTAGATTCAATGCACCTCGAGAGCACGAGTGTGTGCATGTCCATGAGATAACCGAAGCTTCAGGTACTGAGGAAGCAGAAGCAGATGCGGAATACGACAATGCTCTAAAGGAAGCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAAATGAGCACATGGAGGAGGTGAGATACGAGATCGAAGCTCTCGAAGATAAGTAA

mRNA sequence

ATGGAAGATTTTGAGAAGAAGCTCTCTCTCGATGAACAAATGGAGGAAGATCGGAAAACCGATTCCTCTAACACTCTCTCTTTGCTCCGCCAGTTTCTCGAAATCCAGCAGCGTAGAGCTGAAGCTTATTCCAAGCTTAAAAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTTTGCAGTGAGATCACTACGGAATTCAGTAATTGCTCTAAACAAGTCATTGACATCGAATCGAATTTCCGGAGTTCAGATCATAACAGGCTCGAGTTAGCCAACCAGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGACAGCTCAAATTCAGTTATTGAAGAAAGCTGGCCGCCCATCAGAGCGCTTGGTGAGCCACGAGAATTGTAGATTCAATGCACCTCGAGAGCACGAGTGTGTGCATGTCCATGAGATAACCGAAGCTTCAGGTACTGAGGAAGCAGAAGCAGATGCGGAATACGACAATGCTCTAAAGGAAGCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAAATGAGCACATGGAGGAGGTGAGATACGAGATCGAAGCTCTCGAAGATAAGTAA

Coding sequence (CDS)

ATGGAAGATTTTGAGAAGAAGCTCTCTCTCGATGAACAAATGGAGGAAGATCGGAAAACCGATTCCTCTAACACTCTCTCTTTGCTCCGCCAGTTTCTCGAAATCCAGCAGCGTAGAGCTGAAGCTTATTCCAAGCTTAAAAGGGGGTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTTTGCAGTGAGATCACTACGGAATTCAGTAATTGCTCTAAACAAGTCATTGACATCGAATCGAATTTCCGGAGTTCAGATCATAACAGGCTCGAGTTAGCCAACCAGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCACCTGACAGCTCAAATTCAGTTATTGAAGAAAGCTGGCCGCCCATCAGAGCGCTTGGTGAGCCACGAGAATTGTAGATTCAATGCACCTCGAGAGCACGAGTGTGTGCATGTCCATGAGATAACCGAAGCTTCAGGTACTGAGGAAGCAGAAGCAGATGCGGAATACGACAATGCTCTAAAGGAAGCAATCAAAGGTGTGCAGGATGCTGTGACGACCATAAATGAGCACATGGAGGAGGTGAGATACGAGATCGAAGCTCTCGAAGATAAGTAA

Protein sequence

MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQDAVTTINEHMEEVRYEIEALEDK*
Homology
[Close]
BLAST of CsGy5G025380 vs. NCBI nr
Match: XP_004135056.1 (uncharacterized protein LOC101210078 [Cucumis sativus] >KGN52147.1 hypothetical protein Csa_009032 [Cucumis sativus])

HSP 1 Score: 380 bits (976), Expect = 1.44e-132
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60
           MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI
Sbjct: 1   MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60

Query: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQL 120
           SYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQL
Sbjct: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQL 120

Query: 121 LKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180
           LKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ
Sbjct: 121 LKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180

Query: 181 DAVTTINEHMEEVRYEIEALEDK 203
           DAVTTINEHMEEVRYEIEALEDK
Sbjct: 181 DAVTTINEHMEEVRYEIEALEDK 203

[Close]
BLAST of CsGy5G025380 vs. NCBI nr
Match: XP_008446706.1 (PREDICTED: uncharacterized protein LOC103489347 [Cucumis melo] >KAA0034618.1 uncharacterized protein E6C27_scaffold65G006350 [Cucumis melo var. makuwa] >TYK09169.1 uncharacterized protein E5676_scaffold475G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 370 bits (950), Expect = 1.32e-128
Identity = 198/203 (97.54%), Postives = 200/203 (98.52%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60
           MEDFEKKLSLDEQMEEDR TDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI
Sbjct: 1   MEDFEKKLSLDEQMEEDRGTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60

Query: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQL 120
           SYQQLCSEITTEFSNCSKQVIDIESNFR+SDHNRLELAN LRSVQEQEKQKLHLTAQIQL
Sbjct: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELANLLRSVQEQEKQKLHLTAQIQL 120

Query: 121 LKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180
           LKKAGRPSERLVSHENCR NAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ
Sbjct: 121 LKKAGRPSERLVSHENCRINAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180

Query: 181 DAVTTINEHMEEVRYEIEALEDK 203
           DAVTTIN+HMEEVRYEIEALEDK
Sbjct: 181 DAVTTINDHMEEVRYEIEALEDK 203

[Close]
BLAST of CsGy5G025380 vs. NCBI nr
Match: XP_038892275.1 (uncharacterized protein LOC120081463 [Benincasa hispida])

HSP 1 Score: 350 bits (899), Expect = 8.71e-121
Identity = 188/206 (91.26%), Postives = 199/206 (96.60%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTD---SSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSG 60
           MEDFEKKLSLDEQMEED++TD   SSNTLSLLR+FLEIQQRRAEAY++LKRGFDEYMTSG
Sbjct: 1   MEDFEKKLSLDEQMEEDQRTDASDSSNTLSLLREFLEIQQRRAEAYARLKRGFDEYMTSG 60

Query: 61  REISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQ 120
           REISYQQLCS+ITTEFSNCSKQVIDIESNFRSSDHNRLELAN LRSVQE+EKQKLHLTAQ
Sbjct: 61  REISYQQLCSQITTEFSNCSKQVIDIESNFRSSDHNRLELANLLRSVQEKEKQKLHLTAQ 120

Query: 121 IQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIK 180
           IQLLKKAGRPSER+VSHENCRFNAPREHECVHVHE+T ASGTEEAEA+AEYDNALKEAIK
Sbjct: 121 IQLLKKAGRPSERVVSHENCRFNAPREHECVHVHEMTGASGTEEAEAEAEYDNALKEAIK 180

Query: 181 GVQDAVTTINEHMEEVRYEIEALEDK 203
           GVQD VTTINE+MEEVRYEI ALEDK
Sbjct: 181 GVQDTVTTINEYMEEVRYEIAALEDK 206

[Close]
BLAST of CsGy5G025380 vs. NCBI nr
Match: XP_023541138.1 (uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335 bits (860), Expect = 8.19e-115
Identity = 182/208 (87.50%), Postives = 192/208 (92.31%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTD-----SSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMT 60
           MEDF+KKLSL EQMEED +T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLT 120
           SGREISYQQLC EIT EFSNCSKQVIDIESNF S DH+R+ELA+ LRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRF  PREHEC+HVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECLHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQDAVTTINEHMEEVRYEIEALEDK 203
           IKGVQDAVTTINEHMEEVRYEI ALEDK
Sbjct: 181 IKGVQDAVTTINEHMEEVRYEIAALEDK 208

[Close]
BLAST of CsGy5G025380 vs. NCBI nr
Match: XP_022945518.1 (uncharacterized protein C19orf60 homolog [Cucurbita moschata] >XP_022968603.1 uncharacterized protein C19orf60 homolog [Cucurbita maxima] >KAG6573912.1 Required for excision 1-B domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335 bits (859), Expect = 1.16e-114
Identity = 182/208 (87.50%), Postives = 192/208 (92.31%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTD-----SSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMT 60
           MEDF+KKLSL EQMEED +T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLT 120
           SGREISYQQLC EIT EFSNCSKQVIDIESNF S DH+R+ELA+ LRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQDAVTTINEHMEEVRYEIEALEDK 203
           IKGVQ+AVTTINEHMEEVRYEI ALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]
BLAST of CsGy5G025380 vs. ExPASy TrEMBL
Match: A0A0A0KUN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612270 PE=4 SV=1)

HSP 1 Score: 380 bits (976), Expect = 6.96e-133
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60
           MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI
Sbjct: 1   MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60

Query: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQL 120
           SYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQL
Sbjct: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQL 120

Query: 121 LKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180
           LKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ
Sbjct: 121 LKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180

Query: 181 DAVTTINEHMEEVRYEIEALEDK 203
           DAVTTINEHMEEVRYEIEALEDK
Sbjct: 181 DAVTTINEHMEEVRYEIEALEDK 203

[Close]
BLAST of CsGy5G025380 vs. ExPASy TrEMBL
Match: A0A5D3CFT2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001610 PE=4 SV=1)

HSP 1 Score: 370 bits (950), Expect = 6.40e-129
Identity = 198/203 (97.54%), Postives = 200/203 (98.52%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60
           MEDFEKKLSLDEQMEEDR TDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI
Sbjct: 1   MEDFEKKLSLDEQMEEDRGTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60

Query: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQL 120
           SYQQLCSEITTEFSNCSKQVIDIESNFR+SDHNRLELAN LRSVQEQEKQKLHLTAQIQL
Sbjct: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELANLLRSVQEQEKQKLHLTAQIQL 120

Query: 121 LKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180
           LKKAGRPSERLVSHENCR NAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ
Sbjct: 121 LKKAGRPSERLVSHENCRINAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180

Query: 181 DAVTTINEHMEEVRYEIEALEDK 203
           DAVTTIN+HMEEVRYEIEALEDK
Sbjct: 181 DAVTTINDHMEEVRYEIEALEDK 203

[Close]
BLAST of CsGy5G025380 vs. ExPASy TrEMBL
Match: A0A1S3BGI9 (uncharacterized protein LOC103489347 OS=Cucumis melo OX=3656 GN=LOC103489347 PE=4 SV=1)

HSP 1 Score: 370 bits (950), Expect = 6.40e-129
Identity = 198/203 (97.54%), Postives = 200/203 (98.52%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60
           MEDFEKKLSLDEQMEEDR TDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI
Sbjct: 1   MEDFEKKLSLDEQMEEDRGTDSSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMTSGREI 60

Query: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLTAQIQL 120
           SYQQLCSEITTEFSNCSKQVIDIESNFR+SDHNRLELAN LRSVQEQEKQKLHLTAQIQL
Sbjct: 61  SYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELANLLRSVQEQEKQKLHLTAQIQL 120

Query: 121 LKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180
           LKKAGRPSERLVSHENCR NAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ
Sbjct: 121 LKKAGRPSERLVSHENCRINAPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ 180

Query: 181 DAVTTINEHMEEVRYEIEALEDK 203
           DAVTTIN+HMEEVRYEIEALEDK
Sbjct: 181 DAVTTINDHMEEVRYEIEALEDK 203

[Close]
BLAST of CsGy5G025380 vs. ExPASy TrEMBL
Match: A0A6J1HYI6 (uncharacterized protein C19orf60 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467775 PE=4 SV=1)

HSP 1 Score: 335 bits (859), Expect = 5.63e-115
Identity = 182/208 (87.50%), Postives = 192/208 (92.31%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTD-----SSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMT 60
           MEDF+KKLSL EQMEED +T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLT 120
           SGREISYQQLC EIT EFSNCSKQVIDIESNF S DH+R+ELA+ LRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQDAVTTINEHMEEVRYEIEALEDK 203
           IKGVQ+AVTTINEHMEEVRYEI ALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]
BLAST of CsGy5G025380 vs. ExPASy TrEMBL
Match: A0A6J1G147 (uncharacterized protein C19orf60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449729 PE=4 SV=1)

HSP 1 Score: 335 bits (859), Expect = 5.63e-115
Identity = 182/208 (87.50%), Postives = 192/208 (92.31%), Query Frame = 0 

Query: 1   MEDFEKKLSLDEQMEEDRKTD-----SSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMT 60
           MEDF+KKLSL EQMEED +T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLT 120
           SGREISYQQLC EIT EFSNCSKQVIDIESNF S DH+R+ELA+ LRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQDAVTTINEHMEEVRYEIEALEDK 203
           IKGVQ+AVTTINEHMEEVRYEI ALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]
BLAST of CsGy5G025380 vs. TAIR 10
Match: AT5G04910.1 (unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 246.1 bits (627), Expect = 2.4e-65
Identity = 133/217 (61.29%), Postives = 165/217 (76.04%), Query Frame = 0 

Query: 2   EDFEKKLSLDEQMEEDRKTD-----------------SSNTLSLLRQFLEIQQRRAEAYS 61
           EDF+KK+SL + +  D + +                 +S TL LLR  LEIQQRRA+AY+
Sbjct: 4   EDFQKKVSLRDSLSGDIENECGGSGVGSTSSTVGSGVASQTLVLLRSLLEIQQRRAQAYA 63

Query: 62  KLKRGFDEYMTSGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSV 121
            LK GF EY+ SG E  YQ+LCSEITTEFS CSKQV ++ES F + +  R +LA  L  +
Sbjct: 64  NLKSGFSEYVESGAEALYQKLCSEITTEFSECSKQVREMESLFLNPEVGRADLAKLLSDI 123

Query: 122 QEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEA 181
           Q QEKQKLHLT  IQ+LKKAGRPSER+++HENC+F  P +HECVH+HEITEA+GTEEAEA
Sbjct: 124 QTQEKQKLHLTVTIQVLKKAGRPSERMLTHENCKFKKPMQHECVHLHEITEAAGTEEAEA 183

Query: 182 DAEYDNALKEAIKGVQDAVTTINEHMEEVRYEIEALE 202
           DAE+DNALKEAI+GVQDAVT+INE++E++RYEIEALE
Sbjct: 184 DAEFDNALKEAIRGVQDAVTSINEYLEDIRYEIEALE 220

The following BLAST results are available for this feature:
BLAST of CsGy5G025380 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy5G025380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135056.11.44e-132100.00uncharacterized protein LOC101210078 [Cucumis sativus] >KGN52147.1 hypothetical ... [more]
XP_008446706.11.32e-12897.54PREDICTED: uncharacterized protein LOC103489347 [Cucumis melo] >KAA0034618.1 unc... [more]
XP_038892275.18.71e-12191.26uncharacterized protein LOC120081463 [Benincasa hispida][more]
XP_023541138.18.19e-11587.50uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo][more]
XP_022945518.11.16e-11487.50uncharacterized protein C19orf60 homolog [Cucurbita moschata] >XP_022968603.1 un... [more]
BLAST of CsGy5G025380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUN36.96e-133100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612270 PE=4 SV=1[more]
A0A5D3CFT26.40e-12997.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BGI96.40e-12997.54uncharacterized protein LOC103489347 OS=Cucumis melo OX=3656 GN=LOC103489347 PE=... [more]
A0A6J1HYI65.63e-11587.50uncharacterized protein C19orf60 homolog OS=Cucurbita maxima OX=3661 GN=LOC11146... [more]
A0A6J1G1475.63e-11587.50uncharacterized protein C19orf60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of CsGy5G025380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G04910.12.4e-6561.29unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 183..203
NoneNo IPR availableCOILSCoilCoilcoord: 104..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
IPR039491Required for excision 1-B domain-containing proteinPFAMPF14966DNA_repr_REX1Bcoord: 28..122
e-value: 3.9E-32
score: 110.7
IPR039491Required for excision 1-B domain-containing proteinPANTHERPTHR28309REQUIRED FOR EXCISION 1-B DOMAIN-CONTAINING PROTEINcoord: 19..201

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G025380.2CsGy5G025380.2mRNA