CsGy5G021660 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G021660
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type domain-containing protein
Location	Gy14Chr5: 27303853 .. 27304631 (+)
RNA-Seq Expression	CsGy5G021660
Synteny	CsGy5G021660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTGCCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGTCCTCTTTGTCGCTCTATCGAATAATGTTTTTAACAATTTTAGGGGTTTTTTTTAAAAAAATTTCTTTCTCTATCTCTCTTCCTATTTCATTTTGAGTGAAAGAGGATGAAGTTTTGAAACTGCTAAGTGATATATAATTAAATTCACTATACCTACCCATTGTAGTTTAAGTTTTTGGGTACTGGTGATTTATGTTCAAGTCGTGTAATATCATTTCCTCTTTGAACAAAAAAATTGTTCGTATCTCAAGCTATGAAAAAGTGATTTAAGAGCAATACCAACACTTTGTTACTTTGTATTTGTAGTATTAAAATAGGTGGGGGATAGTGGAAGTGTTTCTTTTTCTTTTTTCAGATAAATCATTTACTGTTTTATTAAACTCCTAG

mRNA sequence

ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTGCCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTATAAATCATTTACTGTTTTATTAAACTCCTAG

Coding sequence (CDS)

ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTGCCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTATAAATCATTTACTGTTTTATTAAACTCCTAG

Protein sequence

MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSFTVLLNS*

Homology

[Close]

BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_011655602.1 (probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus])

HSP 1 Score: 217 bits (553), Expect = 1.60e-70
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
           ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELS K F
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHF 114

[Close]

BLAST of CsGy5G021660 vs. NCBI nr
Match: KAA0034267.1 (putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa] >TYK15653.1 putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (541), Expect = 1.08e-68
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVM+TVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMHTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENGR 60

Query: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
           ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELS K F
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHF 114

[Close]

BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_038892017.1 (probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida])

HSP 1 Score: 198 bits (503), Expect = 6.70e-63
Identity = 104/114 (91.23%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGN+SSSEEEYDWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNTSSSEEEYDWENGR 60

Query: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
           ERRISITQFK+LGQSFNGETE+  VSRCVMAECCVCLC FEADEEVSELS K +
Sbjct: 61  ERRISITQFKSLGQSFNGETEDS-VSRCVMAECCVCLCGFEADEEVSELSCKHY 113

[Close]

BLAST of CsGy5G021660 vs. NCBI nr
Match: KAG6601543.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032315.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187 bits (474), Expect = 1.81e-58
Identity = 101/115 (87.83%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN SSSEEE DWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 60

Query: 61  ERRISITQFKTLGQSFN-GETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
           ERRISITQFK+LGQSFN G TE+   SRCVMAECCVCLC FEADEEVSELS K F
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHF 115

[Close]

BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_023523084.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023547007.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (474), Expect = 1.81e-58
Identity = 100/115 (86.96%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN SSSEEE+DWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60

Query: 61  ERRISITQFKTLGQSFN-GETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
           ERRISITQFK+LGQSFN G TE+   SRC MAECCVCLC FEADEEVSELS K F
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHF 115

[Close]

BLAST of CsGy5G021660 vs. ExPASy TrEMBL
Match: A0A0A0KTI8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 217 bits (553), Expect = 7.76e-71
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
           ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELS K F
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHF 114

[Close]

BLAST of CsGy5G021660 vs. ExPASy TrEMBL
Match: A0A5A7SYA9 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001500 PE=4 SV=1)

HSP 1 Score: 213 bits (541), Expect = 5.24e-69
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVM+TVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMHTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENGR 60

Query: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
           ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELS K F
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHF 114

[Close]

BLAST of CsGy5G021660 vs. ExPASy TrEMBL
Match: A0A6J1J1V9 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111482652 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 1.18e-58
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN SSSEEE+DWEN R
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  ERRISITQFKTLGQSFN-GETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
           ERRISITQFK+LGQSFN G TE+   SRC+MAECCVCLC FEADEEVSELS K F
Sbjct: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEVSELSCKHF 157

[Close]

BLAST of CsGy5G021660 vs. ExPASy TrEMBL
Match: A0A6J1GZI7 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111458569 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 9.24e-58
Identity = 101/115 (87.83%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN SSSEEE DWEN R
Sbjct: 75  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 134

Query: 61  ERRISITQFKTLGQSFN-GETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
           ERRISITQFK+LGQSFN G TE+   SRCVMAECCVCLC FEADEEVSELS K F
Sbjct: 135 ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHF 189

[Close]

BLAST of CsGy5G021660 vs. ExPASy TrEMBL
Match: A0A6J1DFU2 (probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LOC111019714 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 2.76e-53
Identity = 94/116 (81.03%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSS--SSEEEYDWEN 60
           MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+ VRSVIQMMSASG++S  SSEEEYD EN
Sbjct: 1   MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSEN 60

Query: 61  RRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 114
            RERRISITQFK+L QSFNG TE+   SRC+ AECCVCLC FEADEEVSELS K F
Sbjct: 61  ARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLCGFEADEEVSELSCKHF 116

[Close]

BLAST of CsGy5G021660 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-18
Identity = 51/111 (45.95%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSS-SSEEEYDWE-N 60
           MG+S++P ++EGV  +P+LVMNTV+S++ +KN VRSV+ M+S+  N + + E++ D E +
Sbjct: 1   MGISHYPTASEGV--MPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS 60

Query: 61  RRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSEL 110
           +R RRISIT F++L ++     E E +      +CCVCLC F+ +EEVSEL
Sbjct: 61  KRRRRISITHFESLCENRGSRNEREAM------DCCVCLCGFKEEEEVSEL 103

[Close]

BLAST of CsGy5G021660 vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 9.6e-14
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 21  MNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRRERRISITQFKTLGQSFNGET 80
           MNTV+S+  LKN VRSV Q++++   SS   ++   ++   RRISITQFK+L ++   E 
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 81  EEEFVSRCVMAECCVCLCRFEADEEVSEL 110
           EE+ V      ECCVCLC F+ +EEVSEL
Sbjct: 61  EEKGV------ECCVCLCGFKEEEEVSEL 83

[Close]

BLAST of CsGy5G021660 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSAS---GNSSSSEEEYDWE 60
           MGLS+ P  +EG+L   V+++NT +S++ +K  VRS + ++  S    +SS S      E
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  NRRERR---ISITQFKTLGQSFNGETEE---EFVSRCVMA---ECCVCLCRFEADEEVSE 110
           N          + Q ++  + F   T     E + RC      EC VCL +F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 119

[Close]

BLAST of CsGy5G021660 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSAS---GNSSSSEEEYDWE 60
           MGLS+ P  +EG+L   V+++NT +S++ +K  VRS + ++  S    +SS S      E
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  NRRERR---ISITQFKTLGQSFNGETEE---EFVSRCVMA---ECCVCLCRFEADEEVSE 110
           N          + Q ++  + F   T     E + RC      EC VCL +F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 119

The following BLAST results are available for this feature:

BLAST of CsGy5G021660 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G021660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655602.1	1.60e-70	98.25	probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus]	[more]
KAA0034267.1	1.08e-68	96.49	putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa] >TYK15653...	[more]
XP_038892017.1	6.70e-63	91.23	probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida]	[more]
KAG6601543.1	1.81e-58	87.83	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
XP_023523084.1	1.81e-58	86.96	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023...	[more]

BLAST of CsGy5G021660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTI8	7.76e-71	98.25	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 P...	[more]
A0A5A7SYA9	5.24e-69	96.49	Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1J1V9	1.18e-58	86.96	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GZI7	9.24e-58	87.83	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1DFU2	2.76e-53	81.03	probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of CsGy5G021660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67856.1	1.7e-18	45.95	RING/U-box superfamily protein	[more]
AT1G24580.1	9.6e-14	48.31	RING/U-box superfamily protein	[more]
AT2G04240.1	1.1e-04	30.58	RING/U-box superfamily protein	[more]
AT2G04240.2	1.1e-04	30.58	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47258:SF3	F21J9.24-RELATED	coord: 1..114
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G021660.1	CsGy5G021660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding