CsGy5G019385 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G019385
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr5: 25752651 .. 25753052 (-)
RNA-Seq ExpressionCsGy5G019385
SyntenyCsGy5G019385
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAGGGAGGCGGAAGCGGTGGCGCGTGAGAGGGACGCGCTGGTTTTGAAGGAGAGGAGAGCGGCAGAGAGGGCAGTTGAAGTTGAGATGGTGAAGCCAGCCGTCGAGGCAGTCTTTATGGAAGAGGTGGCGGCAGGGGAGACGGCGGACGAGGTGACCGGCGCCGAGAGGGGAGAGACAGACGACGCAATCGGAGGGGGAGTCGGGGTCGTCGGAGTGGGAGTAGGGGTGGGAGAGAAGGCGATTGAGATGGAGATGGTGGGGAAGAGGGGAGAGATCAGGACGGTGGTCGGTGGGGGAGAGGAAGGCGGAGCGGAGGAGAGAGAGGAAATTGGCAAGGAGAGAGAGGAAGAAGAGAGGGAGAGAATGGTAGGAGAAGTCATTGAGCTGTGTGTGTAA

mRNA sequence

ATGGTCAGGGAGGCGGAAGCGGTGGCGCGTGAGAGGGACGCGCTGGTTTTGAAGGAGAGGAGAGCGGCAGAGAGGGCAGTTGAAGTTGAGATGGTGAAGCCAGCCGTCGAGGCAGTCTTTATGGAAGAGGTGGCGGCAGGGGAGACGGCGGACGAGGTGACCGGCGCCGAGAGGGGAGAGACAGACGACGCAATCGGAGGGGGAGTCGGGGTCGTCGGAGTGGGAGTAGGGGTGGGAGAGAAGGCGATTGAGATGGAGATGGTGGGGAAGAGGGGAGAGATCAGGACGGTGGTCGGTGGGGGAGAGGAAGGCGGAGCGGAGGAGAGAGAGGAAATTGGCAAGGAGAGAGAGGAAGAAGAGAGGGAGAGAATGGTAGGAGAAGTCATTGAGCTGTGTGTGTAA

Coding sequence (CDS)

ATGGTCAGGGAGGCGGAAGCGGTGGCGCGTGAGAGGGACGCGCTGGTTTTGAAGGAGAGGAGAGCGGCAGAGAGGGCAGTTGAAGTTGAGATGGTGAAGCCAGCCGTCGAGGCAGTCTTTATGGAAGAGGTGGCGGCAGGGGAGACGGCGGACGAGGTGACCGGCGCCGAGAGGGGAGAGACAGACGACGCAATCGGAGGGGGAGTCGGGGTCGTCGGAGTGGGAGTAGGGGTGGGAGAGAAGGCGATTGAGATGGAGATGGTGGGGAAGAGGGGAGAGATCAGGACGGTGGTCGGTGGGGGAGAGGAAGGCGGAGCGGAGGAGAGAGAGGAAATTGGCAAGGAGAGAGAGGAAGAAGAGAGGGAGAGAATGGTAGGAGAAGTCATTGAGCTGTGTGTGTAA

Protein sequence

MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGKRGEIRTVVGGGEEGGAEEREEIGKEREEEERERMVGEVIELCV*
Homology
BLAST of CsGy5G019385 vs. NCBI nr
Match: KGN51526.1 (hypothetical protein Csa_008164 [Cucumis sativus])

HSP 1 Score: 232 bits (591), Expect = 3.71e-76
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE 60
           MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE
Sbjct: 1   MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE 60

Query: 61  TDDAIGGGVGVVGVGVGVGEKAIEMEMVGKRGEIRTVVGGGEEGGAEEREEIGKEREEEE 120
           TDDAIGGGVGVVGVGVGVGEKAIEMEMVGKRGEIRTVVGGGEEGGAEEREEIGKEREEEE
Sbjct: 61  TDDAIGGGVGVVGVGVGVGEKAIEMEMVGKRGEIRTVVGGGEEGGAEEREEIGKEREEEE 120

Query: 121 RERMVGEVIELCV 133
           RERMVGEVIELCV
Sbjct: 121 RERMVGEVIELCV 133

BLAST of CsGy5G019385 vs. NCBI nr
Match: KAG6579228.1 (hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101 bits (252), Expect = 6.04e-25
Identity = 64/107 (59.81%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90
           M++  VEAV +E+VAA + ADEV G ERGETDDA+GGG+  VGV V V E+AIE+++VG+
Sbjct: 1   MMEAGVEAVLVEDVAARKAADEVAGGERGETDDAVGGGI--VGVRVAVREEAIEVKVVGE 60

Query: 91  RGEIRTVVGG----GEEGGAEEREEIGKEREEEERERMVGEVIELCV 133
           RG I   V G    G E GAE+ EEIG+EREEEERER+ GEV+EL +
Sbjct: 61  RGNIGEAVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL 105

BLAST of CsGy5G019385 vs. NCBI nr
Match: KAG6601827.1 (hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 2.13e-17
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGG-VGVVGVGVGVGEKAIEMEMVG 90
           M+KP +EAV +E+V A ETAD VT  E  E DD +GGG +GVV     VGEKAIEM+M+ 
Sbjct: 1   MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGGGIGVV----AVGEKAIEMKMLV 60

Query: 91  KRGEIRTV--VGGGEEGGAEEREEIGKEREEEERE 122
           +RG I      GGGEE  AEE EEIG+EREEEERE
Sbjct: 61  ERGNIGIGRRSGGGEERTAEEGEEIGEEREEEERE 91

BLAST of CsGy5G019385 vs. NCBI nr
Match: KAF3431946.1 (hypothetical protein FNV43_RR26682 [Rhamnella rubrinervis])

HSP 1 Score: 66.6 bits (161), Expect = 1.92e-10
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 0

Query: 5  AEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGETDDA 64
          A+A  R+ DALV  ER + ERA+EVE+V+PA+EAV +E+V A E A+ V+  +  E +DA
Sbjct: 7  ADAPTRDGDALVCDERGSTERAIEVEVVQPAIEAVLVEDVTAREHANLVSVLQSAEANDA 66

Query: 65 IGGG---VGVVGVGVGVGEKAIEMEMVGK 90
          IGG    V +V VGV VGE+ +E+E+VG+
Sbjct: 67 IGGVAVIVAMVIVGVSVGEEPVEVELVGE 95

BLAST of CsGy5G019385 vs. ExPASy TrEMBL
Match: A0A0A0KUZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 232 bits (591), Expect = 1.80e-76
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE 60
           MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE
Sbjct: 1   MVREAEAVARERDALVLKERRAAERAVEVEMVKPAVEAVFMEEVAAGETADEVTGAERGE 60

Query: 61  TDDAIGGGVGVVGVGVGVGEKAIEMEMVGKRGEIRTVVGGGEEGGAEEREEIGKEREEEE 120
           TDDAIGGGVGVVGVGVGVGEKAIEMEMVGKRGEIRTVVGGGEEGGAEEREEIGKEREEEE
Sbjct: 61  TDDAIGGGVGVVGVGVGVGEKAIEMEMVGKRGEIRTVVGGGEEGGAEEREEIGKEREEEE 120

Query: 121 RERMVGEVIELCV 133
           RERMVGEVIELCV
Sbjct: 121 RERMVGEVIELCV 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN51526.13.71e-76100.00hypothetical protein Csa_008164 [Cucumis sativus][more]
KAG6579228.16.04e-2559.81hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6601827.12.13e-1760.00hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF3431946.11.92e-1050.56hypothetical protein FNV43_RR26682 [Rhamnella rubrinervis][more]
Match NameE-valueIdentityDescription
A0A0A0KUZ61.80e-76100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G019385.1CsGy5G019385.1mRNA