CsGy5G019145 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G019145
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr5: 25541661 .. 25542035 (-)
RNA-Seq ExpressionCsGy5G019145
SyntenyCsGy5G019145
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACAAAGCTTGGAATACATTCATCCATGTGTCACACCCACCCATTTATCTTCTTTCCGAAAACTCTGGCTAATTTCCTTCAGAAACATCGGAGGGGGGCATACCAGTTTTCTTTGCTTCAACAAGATTCCATCCCCTTCTTGTAAGTTTCTTCCTCCTTTCTTTCCTTTCTTTATTGGTTTCCCTTTTGTTATATTCCCGTGTCCTCTGTTTGATTCTTTTGTCTTTCATCATGCCTTTTCTGTTCTGGGTGTTTACTTTCCTCCATTCAACCCTTTTCTTGTTCTAAACTTTTGTCTCTACTTTTTCCTGTATTTCTCTTCTGGGTTTCCGTTAGGAAGGTTATTGGTGGATGGTGGAGTTTTAAATTAA

mRNA sequence

ATGCCACAAAGCTTGGAATACATTCATCCATGTGTCACACCCACCCATTTATCTTCTTTCCGAAAACTCTGGCTAATTTCCTTCAGAAACATCGGAGGGGGGCATACCAGTTTTCTTTGCTTCAACAAGATTCCATCCCCTTCTTGTAAGTTTCTTCCTCCTTTCTTTCCTTTCTTTATTGGTTTCCCTTTTGTTATATTCCCGTGTCCTCTGTTTGATTCTTTTGTCTTTCATCATGCCTTTTCTGTTCTGGGTGTTTACTTTCCTCCATTCAACCCTTTTCTTGTTCTAAACTTTTGTCTCTACTTTTTCCTGTATTTCTCTTCTGGGTTTCCGTTAGGAAGGTTATTGGTGGATGGTGGAGTTTTAAATTAA

Coding sequence (CDS)

ATGCCACAAAGCTTGGAATACATTCATCCATGTGTCACACCCACCCATTTATCTTCTTTCCGAAAACTCTGGCTAATTTCCTTCAGAAACATCGGAGGGGGGCATACCAGTTTTCTTTGCTTCAACAAGATTCCATCCCCTTCTTGTAAGTTTCTTCCTCCTTTCTTTCCTTTCTTTATTGGTTTCCCTTTTGTTATATTCCCGTGTCCTCTGTTTGATTCTTTTGTCTTTCATCATGCCTTTTCTGTTCTGGGTGTTTACTTTCCTCCATTCAACCCTTTTCTTGTTCTAAACTTTTGTCTCTACTTTTTCCTGTATTTCTCTTCTGGGTTTCCGTTAGGAAGGTTATTGGTGGATGGTGGAGTTTTAAATTAA

Protein sequence

MPQSLEYIHPCVTPTHLSSFRKLWLISFRNIGGGHTSFLCFNKIPSPSCKFLPPFFPFFIGFPFVIFPCPLFDSFVFHHAFSVLGVYFPPFNPFLVLNFCLYFFLYFSSGFPLGRLLVDGGVLN*
Homology
[Close]
BLAST of CsGy5G019145 vs. NCBI nr
Match: XP_038906750.1 (uncharacterized protein LOC120092674 isoform X1 [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 1.36e-16
Identity = 41/52 (78.85%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1  MPQSLEYIHPCVTPTHLSSFRKLWLISFRNIGGGH----TSFLCFNKIPSPS 48
          MPQSLEYIHPC TPTHLSS  KLWL  FRNIG G     TSFLCFNKIPSPS
Sbjct: 24 MPQSLEYIHPCTTPTHLSSSPKLWLTFFRNIGEGKKKEGTSFLCFNKIPSPS 75

[Close]
BLAST of CsGy5G019145 vs. NCBI nr
Match: KAG6579246.1 (putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 3.05e-09
Identity = 33/50 (66.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 1  MPQSLEYIHPCVTPTHLSSFRKL---WLISFRNIGGGHTSFLCFNKIPSP 47
          MPQSLEYIHPCVTPTH + F K    +L   R    G TSFLCFNKIPSP
Sbjct: 1  MPQSLEYIHPCVTPTHFTFFPKSSANFLQKHRRGKTGVTSFLCFNKIPSP 50

The following BLAST results are available for this feature:
BLAST of CsGy5G019145 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy5G019145 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906750.11.36e-1678.85uncharacterized protein LOC120092674 isoform X1 [Benincasa hispida][more]
KAG6579246.13.05e-0966.00putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CsGy5G019145 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy5G019145 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G019145.1CsGy5G019145.1mRNA