CsGy5G015313 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G015313
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionelongation factor family protein
LocationGy14Chr5: 21324436 .. 21328129 (-)
RNA-Seq ExpressionCsGy5G015313
SyntenyCsGy5G015313
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATTCAATATTTAACAAAAACGTCTGCATTCTAGCAAGGTTTGATTTTCTCCATTTTTCTTTGAATTGGTGCTTACCTAGTGATTTTAAGATATGATTTGGAGTAGTTGTGTAAATGACTGATGATTGGTGGAGATTTTCACTTAATACATTTAGGATTTTCGTTAGGTTTTATCTCGTTGTATTGTGGATGGAGGAAGAACACAAGCTTTCCTTGTTGGGATTACAACAAGATTTCTTGTGTGATAGGATTTTGGAATAATGCAGAAAAGTTGAAGGTATTCTCTTATTTATTTCTTGAAATTTTCTAAAAAAGATCATCAATCAATTCTATCTTGACACTTAAACAAGAATTTTTTTGTGAGATTATGAGAAAATATGATATTAGTTTGTGCTTGTAAGGTGTTTGACGATATGTGTCTGAAGCTTTAAAAGTCTTCTTCTTTTTCTTTTGCATTGTGTGAGTGTGTTCTATGATCTGATTGTTACACACACTGAAGCCTATTTTTAACTTAGTATATTAGACTTGTTGTAACGAAGTTTAGTTTGGCAATTGGCAATTCACCATTTAGAAAATTGTTTGTGAAAAGCCTCTTGTTCTTTCAAACCAAATACCTAAAACCATGGATATAGACAACAAACATAACCTTAAAAGGAACAAGTACCAACATCAAAAGGTGCTTAGTTTTCTTTCATAGAGAAGATTCTATCTGAAAGTTATCTTCCCTCTTTGTTTTACAATTTTTTATTGTGCTAGTTGTTGTCATTTTGCAGTTTGCACAAGTGTTTGTAGCTAAGTCATGTCAATTCATCTATATGGTGCATAATGGTTTTTTAATGTACACTTTCCACCCCTCTTTCCTCCTTTTGGATAGAAGTTGCTCATAATGTTCCATCTCGTGAATTAATTGTTTCTCTGTTTTCATAGGCCGGAAGCGTGGATGTTCAATTATATATACGTTTGTTTATGAGCTATTTGTGATACCCTGAAATCATTTGATTCATAGACCTATTATCTTTTATGCTATGAGTTGGTCTAAATGTACATTTTGTTGTCTCCAGTAGACTGAGGATCCACTATCTTTTCATTGTAGATAATATATGGGTCCTTGAAAATGTTCTGCTTAGTTTTCTTGATAATTTATGTTGCAGACTTATGATGGAATGATTATTGGAGAACATTCTAGGGAATTAGATCTAGATGTAAGTTGAGAACTTTATGTTTAAACTTTGGATCGAAGTTGTTTCTACTTGATTTACATGGTAAGCAATTTTATTTTTTTCCAGGTTAATCTTGTAAGAACTAAAGAAATCTTACCAATATCCGTTCTGCTTGCAAAGATGAAAATGTGAAGCTATCTCCACCTCGACTTGTATGTTATTTCTACATTGAGTTCCAATTGTATATAATTTAGTTTTATTGTGAATCCAGTATCCAAGATGTAGAATTCAACTCTAGAACGTCAGGACACAAGTAGGCTAGAAAGCTTTATTATCTTTTCCTAAGTATGATTACTCACACTAACATCTAATTTTAAACTTAAATGTAGAGATGAGTCTTGAAGAAACAATAGGATATGTTGCATCTGATGAACTTATTAAGGTAGTTTATGCTTTATTCATTCAAATTGTCTTTCTCATCTTCATTTTCTTTGGAAATTATTGTCAATGTACTCAACTCGTAATATTCTGATGCAAAAACTATAACACACTTAATTTGTTATTTTTTAATGTAACATTTAGGATCATATAATGTTTTTGCTTTGTTGTTGTATGGTTATTGATGAAAAACAATTATTTAATGAGGTTGCAACACACATGGCACGCATGCTTTCCTTCTAATGTGGCTTTTATGATAGGATCTAAGTATTAGCTTTTACAATTACTTATTAGGTTCCGACCATTTACAAATAGAAATTTATTGAACTGACTACTTTATAAAAATCTCTATTTTGGACTTACAGTTTGTTGCATTGTGCCAAGACCATATTGAAAAAAAAAAATGAAGCAAAATAGAAAGGAAAAGAAGACAATCCCAGTAGTTGTTCTTAGCTTAGACCAAACAGAAGAGAAATGATCAGAGCACAAAGAAAGAAAGAACTTGCATTTCAATGGAGAATAGCATGAAAAACAAGAACCCGGTTGGAAATAGAAGAAAATAAAACTTCAAATAATAATTAACGACAGAAGAGAACTTTCATATATATATATTTGCTTTTACGCTTTCGATGTGAGACTGTTTGAATTTAGTTCAGATGTTGAAATTCTTGTATCCTGAGTATGTTCTTTTGATTGTAGTGTCAATCCACGGTATAAAGCTTCAAATAATGATACAAGTAGTAAACTTTGTTTTATTGTCGTCGTGGTTGCTCCTTTCGCAGGGTTGTGAAAGGGAGAGTACTGGGCCTCTTGACTTGGAAATTAATTTATTGTTTGATATAGTGTATCGCATACAAATTTTGTTCTCGATAGTGTACGTTTTTATTTTCCTTCTATGGATTCTTTTCATGTTTGAACATTTGATATATTTGTTCTACAGGATGCAGAAGCATATGCTTACCTTTTAAAATGAAGGATTGCAACAATTTTAGAGGAAGGAGGAGGCCTGAGGAAATTTACCAAATACTTGAGTGATAATTCTGGTGCTAAAGGATATTGCATGTATGCCTCTTTAAAGACCTTGTAAATTCCATATTTGTAAATTGTTTAAACTTGATTGAAAATGTACGAATATTACAAAGTGTATTATAGCATATATATGTGTATATATATATATATATATTAAAGTATCGACCATTTGTTTCTATATGGATGAATGAATTATAACATTATTGTCATTCAAATGGTTCGTGTAATGGCGAAGAGATAAGGAGAACATAAAAATATGGTAGTAATTGAGGGATTTGTAACAGA

mRNA sequence

GGATTCAATATTTAACAAAAACGTCTGCATTCTAGCAAGGTTTGATTTTCTCCATTTTTCTTTGAATTGGTGCTTACCTAGTGATTTTAAGATATGATTTGGAGTAGTTGTGTAAATGACTGATGATTGGTGGAGATTTTCACTTAATACATTTAGGATTTTCGTTAGGTTTTATCTCGTTGTATTGTGGATGGAGGAAGAACACAAGCTTTCCTTGTTGGGATTACAACAAGATTTCTTGTGTGATAGGATTTTGGAATAATGCAGAAAAGTTGAAGACTTATGATGGAATGATTATTGGAGAACATTCTAGGGAATTAGATCTAGATGTTAATCTTGTAAGAACTAAAGAAATCTTACCAATATCCGTTCTGCTTGCAAAGATGAAAATGTGAAGCTATCTCCACCTCGACTTAGATGAGTCTTGAAGAAACAATAGGATATGTTGCATCTGATGAACTTATTAAGGATGCAGAAGCATATGCTTACCTTTTAAAATGAAGGATTGCAACAATTTTAGAGGAAGGAGGAGGCCTGAGGAAATTTACCAAATACTTGAGTGATAATTCTGGTGCTAAAGGATATTGCATGTATGCCTCTTTAAAGACCTTGTAAATTCCATATTTGTAAATTGTTTAAACTTGATTGAAAATGTACGAATATTACAAAGTGTATTATAGCATATATATGTGTATATATATATATATATATTAAAGTATCGACCATTTGTTTCTATATGGATGAATGAATTATAACATTATTGTCATTCAAATGGTTCGTGTAATGGCGAAGAGATAAGGAGAACATAAAAATATGGTAGTAATTGAGGGATTTGTAACAGA

Coding sequence (CDS)

ATGATTGGTGGAGATTTTCACTTAATACATTTAGGATTTTCGTTAGGTTTTATCTCGTTGTATTGTGGATGGAGGAAGAACACAAGCTTTCCTTGTTGGGATTACAACAAGATTTCTTGTGTGATAGGATTTTGGAATAATGCAGAAAAGTTGAAGACTTATGATGGAATGATTATTGGAGAACATTCTAGGGAATTAGATCTAGATGTTAATCTTGTAAGAACTAAAGAAATCTTACCAATATCCGTTCTGCTTGCAAAGATGAAAATGTGA

Protein sequence

MIGGDFHLIHLGFSLGFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDGMIIGEHSRELDLDVNLVRTKEILPISVLLAKMKM*
Homology
[Close]
BLAST of CsGy5G015313 vs. NCBI nr
Match: KAE8648454.1 (hypothetical protein Csa_008155 [Cucumis sativus])

HSP 1 Score: 189 bits (481), Expect = 9.53e-61
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MIGGDFHLIHLGFSLGFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDGMIIG 60
          MIGGDFHLIHLGFSLGFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDGMIIG
Sbjct: 1  MIGGDFHLIHLGFSLGFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDGMIIG 60

Query: 61 EHSRELDLDVNLVRTKEILPISVLLAKMKM 90
          EHSRELDLDVNLVRTKE LPISVLLAKMKM
Sbjct: 61 EHSRELDLDVNLVRTKENLPISVLLAKMKM 90

[Close]
BLAST of CsGy5G015313 vs. NCBI nr
Match: XP_031744024.1 (uncharacterized protein LOC116404763 isoform X9 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.88e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 52 KTYDGMIIGEHSRELDLDVNLVRTKEILPISVLLAKMK 89
          +TYDGMIIGEHSRE DLDVNLVRTKE LPISVLLAKMK
Sbjct: 3  QTYDGMIIGEHSRESDLDVNLVRTKENLPISVLLAKMK 40

[Close]
BLAST of CsGy5G015313 vs. NCBI nr
Match: XP_031744022.1 (uncharacterized protein LOC116404763 isoform X8 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.97e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 52 KTYDGMIIGEHSRELDLDVNLVRTKEILPISVLLAKMK 89
          +TYDGMIIGEHSRE DLDVNLVRTKE LPISVLLAKMK
Sbjct: 3  QTYDGMIIGEHSRESDLDVNLVRTKENLPISVLLAKMK 40

[Close]
BLAST of CsGy5G015313 vs. NCBI nr
Match: XP_031744019.1 (uncharacterized protein LOC116404763 isoform X5 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.11e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 52 KTYDGMIIGEHSRELDLDVNLVRTKEILPISVLLAKMK 89
          +TYDGMIIGEHSRE DLDVNLVRTKE LPISVLLAKMK
Sbjct: 3  QTYDGMIIGEHSRESDLDVNLVRTKENLPISVLLAKMK 40

[Close]
BLAST of CsGy5G015313 vs. NCBI nr
Match: XP_031744018.1 (uncharacterized protein LOC116404763 isoform X4 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.57e-12
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 52 KTYDGMIIGEHSRELDLDVNLVRTKEILPISVLLAKMK 89
          +TYDGMIIGEHSRE DLDVNLVRTKE LPISVLLAKMK
Sbjct: 3  QTYDGMIIGEHSRESDLDVNLVRTKENLPISVLLAKMK 40

[Close]
BLAST of CsGy5G015313 vs. ExPASy TrEMBL
Match: A0A0A0KQE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G440080 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 2.86e-45
Identity = 74/87 (85.06%), Postives = 76/87 (87.36%), Query Frame = 0 

Query: 5   DFHLIHLGFSL-GFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDGMIIGEHS 64
           DF    L + L  FISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYD MIIGEHS
Sbjct: 44  DFLHFSLNWCLPSFISLYCGWRKNTSFPCWDYNKISCVIGFWNNAEKLKTYDEMIIGEHS 103

Query: 65  RELDLDVNLVRTKEILPISVLLAKMKM 90
           RELDLD N+VRTKE LPISVLLAKMKM
Sbjct: 104 RELDLDANIVRTKENLPISVLLAKMKM 130

[Close]
BLAST of CsGy5G015313 vs. ExPASy TrEMBL
Match: A0A5B6ZN40 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_014342 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.94e-05
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 51 LKTYDGMIIGEHSRELDLDVNLVRTKEILPI 81
          ++TYDGMI+GEHSR+ DLD+N VRTKE+  I
Sbjct: 51 METYDGMIVGEHSRDTDLDINPVRTKELTNI 81

[Close]
BLAST of CsGy5G015313 vs. ExPASy TrEMBL
Match: A0A6A6L4H8 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_031237 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.11e-05
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 51 LKTYDGMIIGEHSRELDLDVNLVRTKEI 78
          ++TYDGMI+GEHSR+ DLDVN VRTKE+
Sbjct: 26 METYDGMIVGEHSRDTDLDVNPVRTKEL 53

[Close]
BLAST of CsGy5G015313 vs. ExPASy TrEMBL
Match: A0A1S3Z8Q4 (GTP-binding protein TypA/BipA homolog OS=Nicotiana tabacum OX=4097 GN=LOC107784041 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.80e-05
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 48  AEKLKTYDGMIIGEHSRELDLDVNLVRTKEI 78
           A  ++TYDGMIIGEHSR+ DLDVN VRTKE+
Sbjct: 572 APGMETYDGMIIGEHSRDTDLDVNPVRTKEL 602

[Close]
BLAST of CsGy5G015313 vs. ExPASy TrEMBL
Match: A0A1S3ZNY6 (GTP-binding protein TypA/BipA homolog OS=Nicotiana tabacum OX=4097 GN=LOC107788877 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.80e-05
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 48  AEKLKTYDGMIIGEHSRELDLDVNLVRTKEI 78
           A  ++TYDGMIIGEHSR+ DLDVN VRTKE+
Sbjct: 572 APGMETYDGMIIGEHSRDTDLDVNPVRTKEL 602

[Close]
BLAST of CsGy5G015313 vs. TAIR 10
Match: AT2G31060.1 (elongation factor family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 51  LKTYDGMIIGEHSRELDLDVNLVRTKEILPI 82
           L +YDGMIIGEHSRE DLD+N V+ KE+  I
Sbjct: 437 LDSYDGMIIGEHSRETDLDLNPVKAKELTNI 467

[Close]
BLAST of CsGy5G015313 vs. TAIR 10
Match: AT2G31060.2 (elongation factor family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 51  LKTYDGMIIGEHSRELDLDVNLVRTKEILPI 82
           L +YDGMIIGEHSRE DLD+N V+ KE+  I
Sbjct: 577 LDSYDGMIIGEHSRETDLDLNPVKAKELTNI 607

[Close]
BLAST of CsGy5G015313 vs. TAIR 10
Match: AT2G31060.3 (elongation factor family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 51  LKTYDGMIIGEHSRELDLDVNLVRTKEILPI 82
           L +YDGMIIGEHSRE DLD+N V+ KE+  I
Sbjct: 581 LDSYDGMIIGEHSRETDLDLNPVKAKELTNI 611

The following BLAST results are available for this feature:
BLAST of CsGy5G015313 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy5G015313 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648454.19.53e-6198.89hypothetical protein Csa_008155 [Cucumis sativus][more]
XP_031744024.11.88e-1292.11uncharacterized protein LOC116404763 isoform X9 [Cucumis sativus][more]
XP_031744022.11.97e-1292.11uncharacterized protein LOC116404763 isoform X8 [Cucumis sativus][more]
XP_031744019.12.11e-1292.11uncharacterized protein LOC116404763 isoform X5 [Cucumis sativus][more]
XP_031744018.12.57e-1292.11uncharacterized protein LOC116404763 isoform X4 [Cucumis sativus][more]
BLAST of CsGy5G015313 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQE92.86e-4585.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G440080 PE=4 SV=1[more]
A0A5B6ZN405.94e-0567.74Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_014342 PE=4 SV=1[more]
A0A6A6L4H87.11e-0575.00Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_031237 PE=4 SV=1[more]
A0A1S3Z8Q47.80e-0574.19GTP-binding protein TypA/BipA homolog OS=Nicotiana tabacum OX=4097 GN=LOC1077840... [more]
A0A1S3ZNY67.80e-0574.19GTP-binding protein TypA/BipA homolog OS=Nicotiana tabacum OX=4097 GN=LOC1077888... [more]
BLAST of CsGy5G015313 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G31060.11.6e-0567.74elongation factor family protein [more]
AT2G31060.21.6e-0567.74elongation factor family protein [more]
AT2G31060.31.6e-0567.74elongation factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042116GTP-binding protein TypA/BipA, C-terminalGENE3D2.40.50.250bipa proteincoord: 44..83
e-value: 1.1E-6
score: 30.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G015313.1CsGy5G015313.1mRNA