CsGy5G014230 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G014230
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Prolamin_like domain-containing protein
Location	Gy14Chr5: 19514209 .. 19514610 (-)
RNA-Seq Expression	CsGy5G014230
Synteny	CsGy5G014230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACTCGACTCGAGTGCTATTAGTGGTGGTGATGCTATCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACGGTAGATGACAATGGCATATCATCAATATGGAGTGATTGGTTAGATGAAGATAGAGCACCTACTCTAGCACCGTGTTTACACATGATGAGGAGTGAAAAATGCCAAGTGGAACTTTATAACTATTACTTCAATATAAGCAAGAAGGAATTGGATCTAAGTTGTTGCGTATATGTCAATTACATGGGCAAGAAATGTGCTGCAGCATTTGAGTTTTGGTTCTCGTTCCCTAGTTTAGAAGCCTTAAAGCCTAATCCAATGAAGGTCTACAACAATTGTTTTAAGAGACTGACTTTTCCAGCACCAACGCCACTTTAA

mRNA sequence

ATGAACAACTCGACTCGAGTGCTATTAGTGGTGGTGATGCTATCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACGGTAGATGACAATGGCATATCATCAATATGGAGTGATTGGTTAGATGAAGATAGAGCACCTACTCTAGCACCGTGTTTACACATGATGAGGAGTGAAAAATGCCAAGTGGAACTTTATAACTATTACTTCAATATAAGCAAGAAGGAATTGGATCTAAGTTGTTGCGTATATGTCAATTACATGGGCAAGAAATGTGCTGCAGCATTTGAGTTTTGGTTCTCGTTCCCTAGTTTAGAAGCCTTAAAGCCTAATCCAATGAAGGTCTACAACAATTGTTTTAAGAGACTGACTTTTCCAGCACCAACGCCACTTTAA

Coding sequence (CDS)

ATGAACAACTCGACTCGAGTGCTATTAGTGGTGGTGATGCTATCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACGGTAGATGACAATGGCATATCATCAATATGGAGTGATTGGTTAGATGAAGATAGAGCACCTACTCTAGCACCGTGTTTACACATGATGAGGAGTGAAAAATGCCAAGTGGAACTTTATAACTATTACTTCAATATAAGCAAGAAGGAATTGGATCTAAGTTGTTGCGTATATGTCAATTACATGGGCAAGAAATGTGCTGCAGCATTTGAGTTTTGGTTCTCGTTCCCTAGTTTAGAAGCCTTAAAGCCTAATCCAATGAAGGTCTACAACAATTGTTTTAAGAGACTGACTTTTCCAGCACCAACGCCACTTTAA

Protein sequence

MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFKRLTFPAPTPL*

Homology

[Close]

BLAST of CsGy5G014230 vs. NCBI nr
Match: KGN50979.1 (hypothetical protein Csa_008880 [Cucumis sativus])

HSP 1 Score: 273 bits (698), Expect = 1.78e-92
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60
           MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120
           EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CFKRLTFPAPTPL 133
           CFKRLTFPAPTPL
Sbjct: 121 CFKRLTFPAPTPL 133

[Close]

BLAST of CsGy5G014230 vs. NCBI nr
Match: KAE8650019.1 (hypothetical protein Csa_009940 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 2.25e-59
Identity = 90/119 (75.63%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61
           +NST  LL+VVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64

Query: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120
           KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNN
Sbjct: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNN 123

[Close]

BLAST of CsGy5G014230 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (411), Expect = 7.63e-49
Identity = 75/109 (68.81%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 24  LVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELYNYYFNISKKELDLSC 83
           LVQ S VD++  S IW  W+DEDR  TL PCL  MRS KCQVELYNYYFNISKKELDL+C
Sbjct: 16  LVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFNISKKELDLNC 75

Query: 84  CVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFKRLTFPAPTP 132
           CV+V  MGKKCA AF FW+ FP LE  +PNPMKVYNNC  RL  P P P
Sbjct: 76  CVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAP 124

[Close]

BLAST of CsGy5G014230 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (385), Expect = 9.42e-45
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPST--VDDNGISSIWSDWLDEDRAPTLAPCLHMM 60
           M N T  +  ++ + LL V+   LV PS   VDD+  S IW+ W+DEDRA  L PCL MM
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  RSEKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVY 120
           +S KCQV+LYNYYFNISKKELDL CCV+V  MGK CA AF  W+ FP LE  +PNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 NNCFKRLTFPAPTP 132
           NNC  RL    PTP
Sbjct: 121 NNCVGRLQALPPTP 134

[Close]

BLAST of CsGy5G014230 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151 bits (381), Expect = 2.80e-44
Identity = 72/117 (61.54%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 16  LLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELYNYYFNIS 75
           LL ++   L QPST DD+  S IW  W+DEDR   L PCL MM+S KCQVELYNYYFNIS
Sbjct: 8   LLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELYNYYFNIS 67

Query: 76  KKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFKRLTFPAPTP 132
           KKELDL+CCV+V  MGK+CA AF  WF FP  E  + NPMKVY NC  RL    P P
Sbjct: 68  KKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDALPPAP 124

[Close]

BLAST of CsGy5G014230 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 273 bits (698), Expect = 8.62e-93
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60
           MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120
           EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CFKRLTFPAPTPL 133
           CFKRLTFPAPTPL
Sbjct: 121 CFKRLTFPAPTPL 133

[Close]

BLAST of CsGy5G014230 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 9.70e-68
Identity = 100/132 (75.76%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61
           +NST  LL+VVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64

Query: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121
           KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNNC
Sbjct: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124

Query: 122 FKRLTFPAPTPL 133
           FKRLT PAP  L
Sbjct: 125 FKRLTVPAPPTL 136

[Close]

BLAST of CsGy5G014230 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 1.77e-53
Identity = 86/133 (64.66%), Postives = 100/133 (75.19%), Query Frame = 0


Query: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60
           M N T  +  +V+L L  ++   LVQ S VD++  SSIW+DWLDEDRA TL PCL  MRS
Sbjct: 1   MANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120
            KCQVELYNYYFNISKKELDL+CCV+V  MGKKCA AF FW+ FP LE  +PNPMKVYNN
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 120

Query: 121 CFKRLTFPAPTPL 133
           C  RL+ P PTP+
Sbjct: 121 CATRLSAPPPTPI 132

[Close]

BLAST of CsGy5G014230 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 3.69e-49
Identity = 75/109 (68.81%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 24  LVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELYNYYFNISKKELDLSC 83
           LVQ S VD++  S IW  W+DEDR  TL PCL  MRS KCQVELYNYYFNISKKELDL+C
Sbjct: 16  LVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFNISKKELDLNC 75

Query: 84  CVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFKRLTFPAPTP 132
           CV+V  MGKKCA AF FW+ FP LE  +PNPMKVYNNC  RL  P P P
Sbjct: 76  CVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAP 124

[Close]

BLAST of CsGy5G014230 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 4.56e-45
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPST--VDDNGISSIWSDWLDEDRAPTLAPCLHMM 60
           M N T  +  ++ + LL V+   LV PS   VDD+  S IW+ W+DEDRA  L PCL MM
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  RSEKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVY 120
           +S KCQV+LYNYYFNISKKELDL CCV+V  MGK CA AF  W+ FP LE  +PNPM VY
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 NNCFKRLTFPAPTP 132
           NNC  RL    PTP
Sbjct: 121 NNCVGRLQALPPTP 134

The following BLAST results are available for this feature:

BLAST of CsGy5G014230 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G014230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50979.1	1.78e-92	100.00	hypothetical protein Csa_008880 [Cucumis sativus]	[more]
KAE8650019.1	2.25e-59	75.63	hypothetical protein Csa_009940 [Cucumis sativus]	[more]
KAA0046835.1	7.63e-49	68.81	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAA0046841.1	9.42e-45	58.21	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAG6578867.1	2.80e-44	61.54	hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy5G014230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ41	8.62e-93	100.00	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	9.70e-68	75.76	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]
A0A0A0KEB8	1.77e-53	64.66	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]
A0A5D3C280	3.69e-49	68.81	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TZR1	4.56e-45	58.21	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CsGy5G014230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 54..121 e-value: 1.2E-6 score: 28.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G014230.2	CsGy5G014230.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity