CsGy5G013365 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G013365
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 17204012 .. 17204261 (+)
RNA-Seq Expression	CsGy5G013365
Synteny	CsGy5G013365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACAAGGACAGAAACACAGTTTGGAGAGGATCAGGGCGCCGTTAGTCTGAAGATTGAGAGGTTCGCCGTTGATGGAGTTGGAAATGAAGAGGGTTCGCTGTCAATCAGAAGATGGAGAGGTTCGCTGTCGATTAAAAGATGAAGAGGTAGGATGGAGGTTGTCGTCGATGGAGGTTCATCGTCGTCGGTCACCGAACGTTGGAGGTGGAGATAGCCAAAAGCCACTTGACTTACCGAGGCGTTAG

mRNA sequence

ATGAAGACAAGGACAGAAACACAGTTTGGAGAGGATCAGGGCGCCGTTAGTCTGAAGATTGAGAGGTTCGCCGTTGATGGAGTTGGAAATGAAGAGGATGAAGAGGTAGGATGGAGGTTGTCGTCGATGGAGGTTCATCGTCGTCGGTCACCGAACGTTGGAGGTGGAGATAGCCAAAAGCCACTTGACTTACCGAGGCGTTAG

Coding sequence (CDS)

ATGAAGACAAGGACAGAAACACAGTTTGGAGAGGATCAGGGCGCCGTTAGTCTGAAGATTGAGAGGTTCGCCGTTGATGGAGTTGGAAATGAAGAGGATGAAGAGGTAGGATGGAGGTTGTCGTCGATGGAGGTTCATCGTCGTCGGTCACCGAACGTTGGAGGTGGAGATAGCCAAAAGCCACTTGACTTACCGAGGCGTTAG

Protein sequence

MKTRTETQFGEDQGAVSLKIERFAVDGVGNEEDEEVGWRLSSMEVHRRRSPNVGGGDSQKPLDLPRR*

Homology

[Close]

BLAST of CsGy5G013365 vs. NCBI nr
Match: KGN50895.1 (hypothetical protein Csa_023103 [Cucumis sativus])

HSP 1 Score: 139 bits (351), Expect = 1.29e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MKTRTETQFGEDQGAVSLKIERFAVDGVGNEEDEEVGWRLSSMEVHRRRSPNVGGGDSQK 60
          MKTRTETQFGEDQGAVSLKIERFAVDGVGNEEDEEVGWRLSSMEVHRRRSPNVGGGDSQK
Sbjct: 1  MKTRTETQFGEDQGAVSLKIERFAVDGVGNEEDEEVGWRLSSMEVHRRRSPNVGGGDSQK 60

Query: 61 PLDLPRR 67
          PLDLPRR
Sbjct: 61 PLDLPRR 67

[Close]

BLAST of CsGy5G013365 vs. ExPASy TrEMBL
Match: A0A0A0KMM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315890 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 6.22e-42
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MKTRTETQFGEDQGAVSLKIERFAVDGVGNEEDEEVGWRLSSMEVHRRRSPNVGGGDSQK 60
          MKTRTETQFGEDQGAVSLKIERFAVDGVGNEEDEEVGWRLSSMEVHRRRSPNVGGGDSQK
Sbjct: 1  MKTRTETQFGEDQGAVSLKIERFAVDGVGNEEDEEVGWRLSSMEVHRRRSPNVGGGDSQK 60

Query: 61 PLDLPRR 67
          PLDLPRR
Sbjct: 61 PLDLPRR 67

The following BLAST results are available for this feature:

BLAST of CsGy5G013365 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G013365 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50895.1	1.29e-41	100.00	hypothetical protein Csa_023103 [Cucumis sativus]	[more]

BLAST of CsGy5G013365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMM2	6.22e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315890 PE=4 SV=1	[more]

BLAST of CsGy5G013365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G013365.1	CsGy5G013365.1	mRNA