CsGy5G013110 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G013110
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	plastid transcriptionally active 6
Location	Gy14Chr5: 16683181 .. 16684776 (-)
RNA-Seq Expression	CsGy5G013110
Synteny	CsGy5G013110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCTCTAGTCGCCGCGATAGCTGCAGCAGCGGGTTCCGGCGACGTTGGCGATGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCATGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATCATAGGATAAATGAGGAGGAATTTCATAATATTAGTTTTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAAAGAGGTTAGTGGCAAAATTTGCTTAGTTTCATTTCAAACTTGGCTTTATCAGATTCATTTGATAGTTAAAAAAGTTTTCGTTGATGTGTTTCTTGGTTGTAGATGTATGTTACTCCTCCGGATACTGATGTTTATGTCGTCCCCAAAGTTCTTACTCCCTCCAATGCCTCAAAAGGTATTATTGTTCTTTCTTTGCATTTATATACATGATAAAATGGTGTAAATTATTATGTTTTAGTCTTGAACTCTAGATTAAAAACCCGTTTCAACCATTTTCATTAGTTTTTAACTAACAATTGAACAGAAACTTAACCTGTTAGTTTAGCCATTTTCATTAACTTTACATTAACAATAACTAGTGCAATTGGCCGACATTTATCAAGCCTCTCTAAGTTTTCATTTACTTTTTGAAGTCTTATTACTTTAGTCTTACCACATTTGCCTTTAATCCTCTGTGGTTAATTGTTTACATTATGCTATGTTTTTGTTGTATCCTTTTGTATGTTGAAGCACTAGTCTCTGTTCATCTCCTTTATGAAAAGTTTCAATCATTTTCTATAAACAGATTTCGATTTAGCATGTTCATTTAGTCAGTCGGCAAATGTTTACAGACGGTCATTTAAGTTTTTGTGGAAGAACTGTTGGTAAGTTAACAGTTAATTTGATGAAGAAATCTGAGACTAAAACTGACTTATTGAAGGTTAAGGGACTTAAACACAATAATTAAAAGTTAATAGAACAATATGGAACAAACATCATAGTTCAAGGACCAAAATAAGATTTTAAGGAATTTTGTTTATACCATTGTTCAAGGACCAAAATAAGATTTTAAGGAATTTCAGTAGTGTATGATCATACTTTTCTTCACAACTGCAGTATATTAGATGTGCTTAGAGTGATTATGGATGCTACAATGTCATAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGAAAAGGAGGTTCTTAAGGTAAGGTTGGACTTAAGAATTTGATGATTGTTCACTCTATTTTTCTATTTCTAGTGAAAGTGATGATAATTTAATGGACTCTTCCATTTCTTTGTAAATCCGAGTATAGGTTTCGCCGCGATACGTTAGAATAGAAGTAGCAAGCATAGTTATACAAAGTGACGTTCATTGACTCAACGACGTTTGAAATTTAAGAATATTATGCATGTGATGGTCTTCTCTTCAGGATGGGAATGTGGACAAAGGATATAAGAATGTGCAAACAATTCATTTATCTTTTGCAGGTTTTCTTGACGAAGCACTTCAAAAATCAAAGGCTGTGGGACCCTGA

mRNA sequence

ATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCTCTAGTCGCCGCGATAGCTGCAGCAGCGGGTTCCGGCGACGTTGGCGATGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCATGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATCATAGGATAAATGAGGAGGAATTTCATAATATTAGTTTTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAAAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGTCGTCCCCAAAGTTCTTACTCCCTCCAATGCCTCAAAAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGAAAAGGAGGTTCTTAAGGATGGGAATGTGGACAAAGGATATAAGAATGTGCAAACAATTCATTTATCTTTTGCAGGTTTTCTTGACGAAGCACTTCAAAAATCAAAGGCTGTGGGACCCTGA

Coding sequence (CDS)

ATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCTCTAGTCGCCGCGATAGCTGCAGCAGCGGGTTCCGGCGACGTTGGCGATGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCATGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATCATAGGATAAATGAGGAGGAATTTCATAATATTAGTTTTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAAAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGTCGTCCCCAAAGTTCTTACTCCCTCCAATGCCTCAAAAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGAAAAGGAGGTTCTTAAGGATGGGAATGTGGACAAAGGATATAAGAATGTGCAAACAATTCATTTATCTTTTGCAGGTTTTCTTGACGAAGCACTTCAAAAATCAAAGGCTGTGGGACCCTGA

Protein sequence

MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASKEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDEALQKSKAVGP*

Homology

[Close]

BLAST of CsGy5G013110 vs. ExPASy Swiss-Prot
Match: Q9XI19 (PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC6 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.4e-48
Identity = 103/178 (57.87%), Postives = 127/178 (71.35%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEE+EE ++ KD+D+EYDPL AAIAAA G GD GD  I+ VQSKSF+ TQGWDS+M+V
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGD-GD--IAFVQSKSFISTQGWDSDMVV 129

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNAS- 120
           D+RINE+EFH +S M C FFIRK  DP++DVYDF+EMYVTPPDTD+Y +P+VL P     
Sbjct: 130 DYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKY 189

Query: 121 -------------KEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDE 165
                         EPPIDAPRDPLYKSE+E+ K   + K Y+N +T    F   L+E
Sbjct: 190 IRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISK-VFLTKHYRNRRTNDPEFVLDLEE 243

[Close]

BLAST of CsGy5G013110 vs. NCBI nr
Match: KAE8648326.1 (hypothetical protein Csa_023109, partial [Cucumis sativus])

HSP 1 Score: 268 bits (685), Expect = 3.49e-88
Identity = 140/162 (86.42%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV
Sbjct: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK
Sbjct: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120

Query: 121 ----------------------EPPIDAPRDPLYKSEKEVLK 140
                                 EPPIDAPRDPLYKSEKEVLK
Sbjct: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLK 162

[Close]

BLAST of CsGy5G013110 vs. NCBI nr
Match: KAE8637331.1 (hypothetical protein CSA_000002 [Cucumis sativus])

HSP 1 Score: 266 bits (679), Expect = 6.73e-88
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGS DVGDENISIVQSKSF+FTQGWDSEMIV
Sbjct: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIV 60

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH ISFMHCHFFIRKSSD NSDVYDF+EMYVTPPDTDVYVVPKVL PSNASK
Sbjct: 61  DYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASK 120

Query: 121 EPPIDAPRDPLYKSEKEVLK 140
           EPPIDAPRDPLYKSEKEVLK
Sbjct: 121 EPPIDAPRDPLYKSEKEVLK 140

[Close]

BLAST of CsGy5G013110 vs. NCBI nr
Match: XP_031745857.1 (uncharacterized protein LOC116406303 [Cucumis sativus])

HSP 1 Score: 266 bits (679), Expect = 2.04e-87
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGS DVGDENISIVQSKSF+FTQGWDSEMIV
Sbjct: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIV 60

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH ISFMHCHFFIRKSSD NSDVYDF+EMYVTPPDTDVYVVPKVL PSNASK
Sbjct: 61  DYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASK 120

Query: 121 EPPIDAPRDPLYKSEKEVLK 140
           EPPIDAPRDPLYKSEKEVLK
Sbjct: 121 EPPIDAPRDPLYKSEKEVLK 140

[Close]

BLAST of CsGy5G013110 vs. NCBI nr
Match: XP_031745328.1 (uncharacterized protein LOC116401683 [Cucumis sativus])

HSP 1 Score: 266 bits (679), Expect = 3.48e-87
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGS DVGDENISIVQSKSF+FTQGWDSEMIV
Sbjct: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIV 60

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH ISFMHCHFFIRKSSD NSDVYDF+EMYVTPPDTDVYVVPKVL PSNASK
Sbjct: 61  DYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASK 120

Query: 121 EPPIDAPRDPLYKSEKEVLK 140
           EPPIDAPRDPLYKSEKEVLK
Sbjct: 121 EPPIDAPRDPLYKSEKEVLK 140

[Close]

BLAST of CsGy5G013110 vs. NCBI nr
Match: XP_038896770.1 (uncharacterized protein LOC120085024 [Benincasa hispida])

HSP 1 Score: 215 bits (548), Expect = 4.09e-66
Identity = 112/154 (72.73%), Postives = 121/154 (78.57%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIV
Sbjct: 76  MDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIV 135

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNAS- 120
           D+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P     
Sbjct: 136 DYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY 195

Query: 121 -------------KEPPIDAPRDPLYKSEKEVLK 140
                         EPPIDAPRDPLYKSEKEVLK
Sbjct: 196 IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK 229

[Close]

BLAST of CsGy5G013110 vs. ExPASy TrEMBL
Match: A0A1S3BAM8 (uncharacterized protein LOC103487613 OS=Cucumis melo OX=3656 GN=LOC103487613 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 1.98e-66
Identity = 112/154 (72.73%), Postives = 121/154 (78.57%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIV
Sbjct: 76  MDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIV 135

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNAS- 120
           D+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P     
Sbjct: 136 DYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY 195

Query: 121 -------------KEPPIDAPRDPLYKSEKEVLK 140
                         EPPIDAPRDPLYKSEKEVLK
Sbjct: 196 IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK 229

[Close]

BLAST of CsGy5G013110 vs. ExPASy TrEMBL
Match: A0A5A7UA32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00090 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 5.42e-66
Identity = 112/154 (72.73%), Postives = 121/154 (78.57%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIV
Sbjct: 76  MDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIV 135

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNAS- 120
           D+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P     
Sbjct: 136 DYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKY 195

Query: 121 -------------KEPPIDAPRDPLYKSEKEVLK 140
                         EPPIDAPRDPLYKSEKEVLK
Sbjct: 196 IRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK 229

[Close]

BLAST of CsGy5G013110 vs. ExPASy TrEMBL
Match: A0A6J1F6A7 (uncharacterized protein LOC111442572 OS=Cucurbita moschata OX=3662 GN=LOC111442572 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 4.05e-61
Identity = 109/157 (69.43%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSGDVGDENISIVQSKSFMFTQGWDSE 60
           M D+EMEE ++ KDFDIEYD L AA AAAA   GS  VGDENISIVQSKSF+ TQGWDSE
Sbjct: 76  MYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSE 135

Query: 61  MIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSN 120
           MIVD+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P  
Sbjct: 136 MIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMP 195

Query: 121 AS--------------KEPPIDAPRDPLYKSEKEVLK 140
                            EPPIDAPRDPLYKSEKEVLK
Sbjct: 196 QKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK 232

[Close]

BLAST of CsGy5G013110 vs. ExPASy TrEMBL
Match: A0A6J1IGR4 (uncharacterized protein LOC111477076 OS=Cucurbita maxima OX=3661 GN=LOC111477076 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 4.28e-61
Identity = 109/157 (69.43%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSGDVGDENISIVQSKSFMFTQGWDSE 60
           M D+EMEE ++ KDFDIEYD L AA AAAA   GS  VGDENISIVQSKSF+ TQGWDSE
Sbjct: 78  MYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSE 137

Query: 61  MIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSN 120
           MIVD+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P  
Sbjct: 138 MIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMP 197

Query: 121 AS--------------KEPPIDAPRDPLYKSEKEVLK 140
                            EPPIDAPRDPLYKSEKEVLK
Sbjct: 198 QKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK 234

[Close]

BLAST of CsGy5G013110 vs. ExPASy TrEMBL
Match: A0A0A0L1W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G363980 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 1.51e-57
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIV
Sbjct: 76  MDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIV 135

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTP 115
           D+RINEEEFH IS +HC FFIRK  DP+SDVYDF+EMYVTPPDTDVY +PKVL P
Sbjct: 136 DYRINEEEFHKISLLHCDFFIRKPPDPDSDVYDFREMYVTPPDTDVYAIPKVLAP 190

[Close]

BLAST of CsGy5G013110 vs. TAIR 10
Match: AT1G21600.1 (plastid transcriptionally active 6 )

HSP 1 Score: 191.4 bits (485), Expect = 6.0e-49
Identity = 103/178 (57.87%), Postives = 127/178 (71.35%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEE+EE ++ KD+D+EYDPL AAIAAA G GD GD  I+ VQSKSF+ TQGWDS+M+V
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGD-GD--IAFVQSKSFISTQGWDSDMVV 129

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNAS- 120
           D+RINE+EFH +S M C FFIRK  DP++DVYDF+EMYVTPPDTD+Y +P+VL P     
Sbjct: 130 DYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKY 189

Query: 121 -------------KEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDE 165
                         EPPIDAPRDPLYKSE+E+ K   + K Y+N +T    F   L+E
Sbjct: 190 IRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISK-VFLTKHYRNRRTNDPEFVLDLEE 243

[Close]

BLAST of CsGy5G013110 vs. TAIR 10
Match: AT1G21600.2 (plastid transcriptionally active 6 )

HSP 1 Score: 191.4 bits (485), Expect = 6.0e-49
Identity = 103/178 (57.87%), Postives = 127/178 (71.35%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEE+EE ++ KD+D+EYDPL AAIAAA G GD GD  I+ VQSKSF+ TQGWDS+M+V
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGD-GD--IAFVQSKSFISTQGWDSDMVV 129

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNAS- 120
           D+RINE+EFH +S M C FFIRK  DP++DVYDF+EMYVTPPDTD+Y +P+VL P     
Sbjct: 130 DYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKY 189

Query: 121 -------------KEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDE 165
                         EPPIDAPRDPLYKSE+E+ K   + K Y+N +T    F   L+E
Sbjct: 190 IRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISK-VFLTKHYRNRRTNDPEFVLDLEE 243

The following BLAST results are available for this feature:

BLAST of CsGy5G013110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI19	8.4e-48	57.87	PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CsGy5G013110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648326.1	3.49e-88	86.42	hypothetical protein Csa_023109, partial [Cucumis sativus]	[more]
KAE8637331.1	6.73e-88	95.00	hypothetical protein CSA_000002 [Cucumis sativus]	[more]
XP_031745857.1	2.04e-87	95.00	uncharacterized protein LOC116406303 [Cucumis sativus]	[more]
XP_031745328.1	3.48e-87	95.00	uncharacterized protein LOC116401683 [Cucumis sativus]	[more]
XP_038896770.1	4.09e-66	72.73	uncharacterized protein LOC120085024 [Benincasa hispida]	[more]

BLAST of CsGy5G013110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAM8	1.98e-66	72.73	uncharacterized protein LOC103487613 OS=Cucumis melo OX=3656 GN=LOC103487613 PE=...	[more]
A0A5A7UA32	5.42e-66	72.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1F6A7	4.05e-61	69.43	uncharacterized protein LOC111442572 OS=Cucurbita moschata OX=3662 GN=LOC1114425...	[more]
A0A6J1IGR4	4.28e-61	69.43	uncharacterized protein LOC111477076 OS=Cucurbita maxima OX=3661 GN=LOC111477076...	[more]
A0A0A0L1W3	1.51e-57	80.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G363980 PE=4 SV=1	[more]

BLAST of CsGy5G013110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21600.1	6.0e-49	57.87	plastid transcriptionally active 6	[more]
AT1G21600.2	6.0e-49	57.87	plastid transcriptionally active 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044710	PLASTID TRANSCRIPTIONALLY ACTIVE protein 6	PANTHER	PTHR35994	EXPRESSED PROTEIN	coord: 1..150
None	No IPR available	PANTHER	PTHR35994:SF1	EXPRESSED PROTEIN	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G013110.2	CsGy5G013110.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000427	plastid-encoded plastid RNA polymerase complex