CsGy5G013018 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G013018
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DNA topoisomerase 2-binding protein 1 isoform X2
Location	Gy14Chr5: 16541839 .. 16542400 (+)
RNA-Seq Expression	CsGy5G013018
Synteny	CsGy5G013018

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTGAAGTTACTCTTTCACAGAGCACGCCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTCGCGATGGGAAGGAATGAAGAAAACACTGTTAATTACCTTGCAAATGACTTTCCGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGATTGTAAATATGATTCTCAGAGGTGGAGGCTTCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAACTTATTCCTAAAGGTTTGATATGCAAGACTCGTATTCTAAGCTATCTGTCTTTTGAATAGCAATCTTAAACTACCATCATGCAGAATAACTGCACATTTCATCTGGATGCATGACTAATATTTGTTTGGAGATCCCTAGCCTGTTTGTCTTGTTCTAAATTTTCTGGCTGTTTACTTTGCAGCATCTAGTAAAATGA

mRNA sequence

ATGGATGTTGAAGTTACTCTTTCACAGAGCACGCCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTCGCGATGGGAAGGAATGAAGAAAACACTGTTAATTACCTTGCAAATGACTTTCCGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGATTGTAAATATGATTCTCAGAGGTGGAGGCTTCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAACTTATTCCTAAAGCATCTAGTAAAATGA

Coding sequence (CDS)

ATGGATGTTGAAGTTACTCTTTCACAGAGCACGCCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTCGCGATGGGAAGGAATGAAGAAAACACTGTTAATTACCTTGCAAATGACTTTCCGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGATTGTAAATATGATTCTCAGAGGTGGAGGCTTCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAACTTATTCCTAAAGCATCTAGTAAAATGA

Protein sequence

MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGLKIVIVRRRRSLFLVDTWHMMNLFLKHLVK*

Homology

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BLAST of CsGy5G013018 vs. NCBI nr
Match: KAE8637340.1 (hypothetical protein CSA_000011 [Cucumis sativus])

HSP 1 Score: 256 bits (655), Expect = 5.16e-86
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR
Sbjct: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGLKIVIVRRRRSLFLVDTWHM 120
           IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGLKIVIVRRRRSLFLVDTWHM
Sbjct: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGLKIVIVRRRRSLFLVDTWHM 120

Query: 121 MNLFLKHLVK 130
           MNLFLKHLVK
Sbjct: 121 MNLFLKHLVK 130

[Close]

BLAST of CsGy5G013018 vs. NCBI nr
Match: XP_031745332.1 (uncharacterized protein LOC116405488 [Cucumis sativus] >KAE8637337.1 hypothetical protein CSA_000008 [Cucumis sativus])

HSP 1 Score: 253 bits (646), Expect = 1.22e-84
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVN LANDFPSEENDLYLSACR
Sbjct: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFPSEENDLYLSACR 60

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGLKIVIVRRRRSLFLVDTWHM 120
           IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGLKIVIVRRRRSLFLVDTWHM
Sbjct: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGLKIVIVRRRRSLFLVDTWHM 120

Query: 121 MNLFLKHLVK 130
           MNLFLKHLVK
Sbjct: 121 MNLFLKHLVK 130

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BLAST of CsGy5G013018 vs. NCBI nr
Match: XP_031745331.1 (LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-like, partial [Cucumis sativus])

HSP 1 Score: 196 bits (498), Expect = 1.79e-55
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR
Sbjct: 365 MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 424

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGLK 102
           IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIA  L+
Sbjct: 425 IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIAXWLE 466

[Close]

BLAST of CsGy5G013018 vs. NCBI nr
Match: XP_031739410.1 (DNA topoisomerase 2-binding protein 1-like [Cucumis sativus])

HSP 1 Score: 182 bits (463), Expect = 6.72e-53
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           +DVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVN LANDF SEENDLYLSACR
Sbjct: 221 VDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFQSEENDLYLSACR 280

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIA 98
           IKVVGFEASEMQK+VNMILRGGG RYMLFNDKLTHII 
Sbjct: 281 IKVVGFEASEMQKVVNMILRGGGSRYMLFNDKLTHIIV 318

[Close]

BLAST of CsGy5G013018 vs. NCBI nr
Match: XP_031741714.1 (uncharacterized protein LOC116403909 [Cucumis sativus])

HSP 1 Score: 176 bits (445), Expect = 2.64e-49
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           MDVEVTLSQSTPMFS ASHFINEVDVEV VAMGRNEENTVN+LANDF SEENDLYLSACR
Sbjct: 340 MDVEVTLSQSTPMFSYASHFINEVDVEVSVAMGRNEENTVNFLANDFQSEENDLYLSACR 399

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIA 98
           IKVVGFEASEMQKIVNMI RGGG RY+LFNDKLTHII 
Sbjct: 400 IKVVGFEASEMQKIVNMIHRGGGSRYVLFNDKLTHIIV 437

[Close]

BLAST of CsGy5G013018 vs. ExPASy TrEMBL
Match: A0A1S3BAL1 (DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.19e-48
Identity = 91/101 (90.10%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACR
Sbjct: 271 MDVEATLSQSTSMFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACR 330

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGL 101
           IKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   L
Sbjct: 331 IKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNL 371

[Close]

BLAST of CsGy5G013018 vs. ExPASy TrEMBL
Match: A0A5A7U8G5 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00240 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.30e-48
Identity = 91/101 (90.10%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACR
Sbjct: 322 MDVEATLSQSTSMFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACR 381

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGL 101
           IKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   L
Sbjct: 382 IKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNL 422

[Close]

BLAST of CsGy5G013018 vs. ExPASy TrEMBL
Match: A0A1S4DV59 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.31e-48
Identity = 91/101 (90.10%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACR
Sbjct: 323 MDVEATLSQSTSMFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACR 382

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGL 101
           IKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   L
Sbjct: 383 IKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNL 423

[Close]

BLAST of CsGy5G013018 vs. ExPASy TrEMBL
Match: A0A1S4DV57 (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.31e-48
Identity = 91/101 (90.10%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACR
Sbjct: 323 MDVEATLSQSTSMFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACR 382

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGL 101
           IKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   L
Sbjct: 383 IKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNL 423

[Close]

BLAST of CsGy5G013018 vs. ExPASy TrEMBL
Match: A0A5D3BRP8 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00080 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.34e-48
Identity = 91/101 (90.10%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACR 60
           MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACR
Sbjct: 344 MDVEATLSQSTSMFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACR 403

Query: 61  IKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGL 101
           IKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   L
Sbjct: 404 IKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNL 444

[Close]

BLAST of CsGy5G013018 vs. TAIR 10
Match: AT1G77320.1 (transcription coactivators )

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-15
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 36  EENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTH 95
           E+N     A D  SE+NDLYLS CRI ++GFEASEM+K+  ++ RGGG RYML N+++TH
Sbjct: 346 EQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTH 405

Query: 96  II 98
           I+
Sbjct: 406 IV 407

[Close]

BLAST of CsGy5G013018 vs. TAIR 10
Match: AT1G77320.2 (transcription coactivators )

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-15
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 36  EENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTH 95
           E+N     A D  SE+NDLYLS CRI ++GFEASEM+K+  ++ RGGG RYML N+++TH
Sbjct: 329 EQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTH 388

Query: 96  II 98
           I+
Sbjct: 389 IV 390

The following BLAST results are available for this feature:

BLAST of CsGy5G013018 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G013018 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637340.1	5.16e-86	100.00	hypothetical protein CSA_000011 [Cucumis sativus]	[more]
XP_031745332.1	1.22e-84	99.23	uncharacterized protein LOC116405488 [Cucumis sativus] >KAE8637337.1 hypothetica...	[more]
XP_031745331.1	1.79e-55	97.06	LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-like, partial [Cucumi...	[more]
XP_031739410.1	6.72e-53	93.88	DNA topoisomerase 2-binding protein 1-like [Cucumis sativus]	[more]
XP_031741714.1	2.64e-49	91.84	uncharacterized protein LOC116403909 [Cucumis sativus]	[more]

BLAST of CsGy5G013018 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAL1	1.19e-48	90.10	DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7U8G5	1.30e-48	90.10	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S4DV59	1.31e-48	90.10	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S4DV57	1.31e-48	90.10	DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3BRP8	1.34e-48	90.10	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of CsGy5G013018 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77320.1	7.2e-15	56.45	transcription coactivators	[more]
AT1G77320.2	7.2e-15	56.45	transcription coactivators	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 35..116 e-value: 9.6E-6 score: 27.6
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 54..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G013018.1	CsGy5G013018.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016853	isomerase activity