CsGy5G012995 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G012995
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 15486046 .. 15486447 (+)
RNA-Seq Expression	CsGy5G012995
Synteny	CsGy5G012995

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATCCATCGAAACAAGGAGGAAGAACATTGCCTCAAGACACAACCACCAAGAAATGAGAATGATGAAGAGATTGATACTTATCCACCACTCTTGTTGCTCAAAAGGAAACCAACAACCACACAAGTAGTGGTTGATCTAACAAAAGAATACCAACTCAACAAGGAACCATCACAAAAGAAAAGAAGAAAACTAACTACTAAGTGGATGCTTGTGGCAGACTCCCCCATCGAATCTCCTCACCAAGATGGCTCTGTACCCTCCACCTCTTTACCAACTGAACAACTCTCATCTCTCCCTCGCGAAGACAACGAAGATCCTTTCCTACTTCCAATTGAAGACGTTTTTTATCCACCTCCACCAATTGACCCCTTCTCGCCTAAATCGCCCATCTCCTAG

mRNA sequence

ATGACTATCCATCGAAACAAGGAGGAAGAACATTGCCTCAAGACACAACCACCAAGAAATGAGAATGATGAAGAGATTGATACTTATCCACCACTCTTGTTGCTCAAAAGGAAACCAACAACCACACAAGTAGTGGTTGATCTAACAAAAGAATACCAACTCAACAAGGAACCATCACAAAAGAAAAGAAGAAAACTAACTACTAAGTGGATGCTTGTGGCAGACTCCCCCATCGAATCTCCTCACCAAGATGGCTCTGTACCCTCCACCTCTTTACCAACTGAACAACTCTCATCTCTCCCTCGCGAAGACAACGAAGATCCTTTCCTACTTCCAATTGAAGACGTTTTTTATCCACCTCCACCAATTGACCCCTTCTCGCCTAAATCGCCCATCTCCTAG

Coding sequence (CDS)

ATGACTATCCATCGAAACAAGGAGGAAGAACATTGCCTCAAGACACAACCACCAAGAAATGAGAATGATGAAGAGATTGATACTTATCCACCACTCTTGTTGCTCAAAAGGAAACCAACAACCACACAAGTAGTGGTTGATCTAACAAAAGAATACCAACTCAACAAGGAACCATCACAAAAGAAAAGAAGAAAACTAACTACTAAGTGGATGCTTGTGGCAGACTCCCCCATCGAATCTCCTCACCAAGATGGCTCTGTACCCTCCACCTCTTTACCAACTGAACAACTCTCATCTCTCCCTCGCGAAGACAACGAAGATCCTTTCCTACTTCCAATTGAAGACGTTTTTTATCCACCTCCACCAATTGACCCCTTCTCGCCTAAATCGCCCATCTCCTAG

Protein sequence

MTIHRNKEEEHCLKTQPPRNENDEEIDTYPPLLLLKRKPTTTQVVVDLTKEYQLNKEPSQKKRRKLTTKWMLVADSPIESPHQDGSVPSTSLPTEQLSSLPREDNEDPFLLPIEDVFYPPPPIDPFSPKSPIS*

Homology

[Close]

BLAST of CsGy5G012995 vs. NCBI nr
Match: KGN65094.1 (hypothetical protein Csa_021510 [Cucumis sativus])

HSP 1 Score: 266 bits (679), Expect = 1.41e-89
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MTIHRNKEEEHCLKTQPPRNENDEEIDTYPPLLLLKRKPTTTQVVVDLTKEYQLNKEPSQ 60
           MTIHRNKEEEHCLKTQPPRNENDEEIDTYPPLLLLKRKPTTTQVVVDLTKEYQLNKEPSQ
Sbjct: 1   MTIHRNKEEEHCLKTQPPRNENDEEIDTYPPLLLLKRKPTTTQVVVDLTKEYQLNKEPSQ 60

Query: 61  KKRRKLTTKWMLVADSPIESPHQDGSVPSTSLPTEQLSSLPREDNEDPFLLPIEDVFYPP 120
           KKRRKLTTKWMLVADSPIESPHQDGSVPSTSLPTEQLSSLPREDNEDPFLLPIEDVFYPP
Sbjct: 61  KKRRKLTTKWMLVADSPIESPHQDGSVPSTSLPTEQLSSLPREDNEDPFLLPIEDVFYPP 120

Query: 121 PPIDPFSPKSPIS 133
           PPIDPFSPKSPIS
Sbjct: 121 PPIDPFSPKSPIS 133

[Close]

BLAST of CsGy5G012995 vs. NCBI nr
Match: KAA0041155.1 (hypothetical protein E6C27_scaffold128G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 4.63e-14
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 36  KRKPTTTQVVVDLTKEYQLNKEPSQKKRRKLTTKWMLVADSPIESPHQDGSVPSTSLPTE 95
           KRK +T  V VD T++ +  K+P QKK+RK T   +L  DS  ES   D S+PS+SLP++
Sbjct: 10  KRKSSTLGVEVDPTQDDKPIKDPPQKKQRKQTVNRILDDDSFDESNGLDDSIPSSSLPSK 69

Query: 96  QLSSLPREDNEDPFLLPIEDVFYPPPPIDP 125
               +P ED EDPF LP +++FYPP PI P
Sbjct: 70  DNPPIPHEDIEDPFPLPHKEIFYPPSPISP 99

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BLAST of CsGy5G012995 vs. ExPASy TrEMBL
Match: A0A0A0LVW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G207810 PE=4 SV=1)

HSP 1 Score: 266 bits (679), Expect = 6.83e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MTIHRNKEEEHCLKTQPPRNENDEEIDTYPPLLLLKRKPTTTQVVVDLTKEYQLNKEPSQ 60
           MTIHRNKEEEHCLKTQPPRNENDEEIDTYPPLLLLKRKPTTTQVVVDLTKEYQLNKEPSQ
Sbjct: 1   MTIHRNKEEEHCLKTQPPRNENDEEIDTYPPLLLLKRKPTTTQVVVDLTKEYQLNKEPSQ 60

Query: 61  KKRRKLTTKWMLVADSPIESPHQDGSVPSTSLPTEQLSSLPREDNEDPFLLPIEDVFYPP 120
           KKRRKLTTKWMLVADSPIESPHQDGSVPSTSLPTEQLSSLPREDNEDPFLLPIEDVFYPP
Sbjct: 61  KKRRKLTTKWMLVADSPIESPHQDGSVPSTSLPTEQLSSLPREDNEDPFLLPIEDVFYPP 120

Query: 121 PPIDPFSPKSPIS 133
           PPIDPFSPKSPIS
Sbjct: 121 PPIDPFSPKSPIS 133

[Close]

BLAST of CsGy5G012995 vs. ExPASy TrEMBL
Match: A0A5A7TIC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00760 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.24e-14
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 36  KRKPTTTQVVVDLTKEYQLNKEPSQKKRRKLTTKWMLVADSPIESPHQDGSVPSTSLPTE 95
           KRK +T  V VD T++ +  K+P QKK+RK T   +L  DS  ES   D S+PS+SLP++
Sbjct: 10  KRKSSTLGVEVDPTQDDKPIKDPPQKKQRKQTVNRILDDDSFDESNGLDDSIPSSSLPSK 69

Query: 96  QLSSLPREDNEDPFLLPIEDVFYPPPPIDP 125
               +P ED EDPF LP +++FYPP PI P
Sbjct: 70  DNPPIPHEDIEDPFPLPHKEIFYPPSPISP 99

[Close]

BLAST of CsGy5G012995 vs. ExPASy TrEMBL
Match: A0A5A7ULS0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00200 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.06e-04
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 2   TIHRNKEEEHCLKTQP---PRNENDEEIDTYPPLLLLKRKPTTTQVVVDLTKEYQLNKEP 61
           ++H+NKEEE C KTQ    P +E+D+ ++  PP        +T+++ VD TKE + +  P
Sbjct: 156 SLHQNKEEERCQKTQKQRRPESESDK-VEKSPP------HQSTSRIEVDATKEIRYDPSP 215

Query: 62  SQKKRRKLTTKWMLVADSPIESPHQDGSVPSTSL 92
            ++KR KL  K ++  +SP++S  Q    P   L
Sbjct: 216 LKRKRIKLKNKRLVEENSPVQSNLQQELPPPVPL 242

[Close]

BLAST of CsGy5G012995 vs. ExPASy TrEMBL
Match: A0A5A7V063 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00700 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.44e-04
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 2   TIHRNKEEEHCLKTQPPRNENDEEIDTYPPLLLLKRKPTTTQVVVDL 48
           T+H+NKEEE  LKTQ  RNEN+EE DT  P  +LKR+ TT +   ++
Sbjct: 75  TLHQNKEEERQLKTQQLRNENNEEDDTSSPSSVLKRESTTARATEEI 121

[Close]

BLAST of CsGy5G012995 vs. ExPASy TrEMBL
Match: A0A5D3DQE7 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00740 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.46e-04
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 2   TIHRNKEEEHCLKTQPPRNENDEEIDTYPPLLLLKRKPTT 41
           T+++NKEEE  LKT+P RNENDEE D  PP    KRK TT
Sbjct: 329 TLYQNKEEERHLKTEPSRNENDEEDDISPPPSSFKRKSTT 368

The following BLAST results are available for this feature:

BLAST of CsGy5G012995 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G012995 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65094.1	1.41e-89	100.00	hypothetical protein Csa_021510 [Cucumis sativus]	[more]
KAA0041155.1	4.63e-14	48.89	hypothetical protein E6C27_scaffold128G00760 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy5G012995 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVW0	6.83e-90	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G207810 PE=4 SV=1	[more]
A0A5A7TIC0	2.24e-14	48.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7ULS0	5.06e-04	35.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V063	6.44e-04	53.19	Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DQE7	7.46e-04	62.50	Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CsGy5G012995 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G012995.1	CsGy5G012995.1	mRNA