CsGy5G012690 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G012690
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionIleal sodium/bile acid cotransporter, putative
LocationGy14Chr5: 14956953 .. 14957270 (+)
RNA-Seq ExpressionCsGy5G012690
SyntenyCsGy5G012690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGACGACAATTTTGGCCTTACTTTTCAGGCAGTTTTGGCTTTGTTCATTACTCGTCCACTTCATCTCCTCCGCTTTTGACACATCTCTTTGGGGCTGCAGTCTTGATTAGCTTTGCAGTTTCATTTCCTGGAGTTTTCCTCCAAGATGGATTCCCGAGAATCGCACTTCTGTTCGAAAAGATCGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCCTAGCAAGTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCTTGTGGCTTCTCCTTGATGGCTTTTTTGCTATCATTTAGAGGGTAG

mRNA sequence

ATGTTGGGACGACAATTTTGGCCTTACTTTTCAGGCAGTTTTGGCTTTGTTCATTACTCGTCCACTTCATCTCCTCCGCTTTTGACACATCTCTTTGGGGCTGCAGTCTTGATTAGCTTTGCAGTTTCATTTCCTGGAGTTTTCCTCCAAGATGGATTCCCGAGAATCGCACTTCTGTTCGAAAAGATCGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCCTAGCAAGTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCTTGTGGCTTCTCCTTGATGGCTTTTTTGCTATCATTTAGAGGGTAG

Coding sequence (CDS)

ATGTTGGGACGACAATTTTGGCCTTACTTTTCAGGCAGTTTTGGCTTTGTTCATTACTCGTCCACTTCATCTCCTCCGCTTTTGACACATCTCTTTGGGGCTGCAGTCTTGATTAGCTTTGCAGTTTCATTTCCTGGAGTTTTCCTCCAAGATGGATTCCCGAGAATCGCACTTCTGTTCGAAAAGATCGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCCTAGCAAGTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCTTGTGGCTTCTCCTTGATGGCTTTTTTGCTATCATTTAGAGGGTAG

Protein sequence

MLGRQFWPYFSGSFGFVHYSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG*
Homology
BLAST of CsGy5G012690 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 164 bits (416), Expect = 1.19e-49
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 20  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL 79
           SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL
Sbjct: 72  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL 131

Query: 80  IHQNFAWISWLACGFSLMAFLLSFRG 105
           IHQNFAWISWLACGFSLMAFLLSFRG
Sbjct: 132 IHQNFAWISWLACGFSLMAFLLSFRG 157

BLAST of CsGy5G012690 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (370), Expect = 8.41e-43
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 0

Query: 20  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL 79
           S  SSPPLLTHLF AAVLISFAVSF G+FLQ+GFPRIALLFEKIGALIAAIGVCI+ASLL
Sbjct: 61  SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLL 120

Query: 80  IHQNFAWISWLACGFSLMAFLLSFRG 105
           IHQNFAWISWLA GFSLMAF+LSFRG
Sbjct: 121 IHQNFAWISWLASGFSLMAFVLSFRG 146

BLAST of CsGy5G012690 vs. NCBI nr
Match: KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (275), Expect = 1.84e-28
Identity = 57/84 (67.86%), Postives = 70/84 (83.33%), Query Frame = 0

Query: 22  TSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLLI- 81
           TS PPLL +LF AA+LIS A+S   +FLQ  FPRIAL F KIGA++AA+G CI+ASLL+ 
Sbjct: 56  TSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACIMASLLLK 115

Query: 82  HQNFAWISWLACGFSLMAFLLSFR 104
           HQNF+WI WLACGF+LMAF+LSF+
Sbjct: 116 HQNFSWIPWLACGFALMAFILSFK 139

BLAST of CsGy5G012690 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 108 bits (269), Expect = 2.99e-27
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 16  FVHYSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCIL 75
           F+    TS PPLL H F AAV ISFAVSF  +FL + FPR A LFEK+GAL +A GVC +
Sbjct: 75  FISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFSAFGVCFI 134

Query: 76  AS-LLIHQNFAWISWLACGFSLMAFLLSFR 104
           AS LL+HQNFAWI W+AC FS++ F LSF+
Sbjct: 135 ASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of CsGy5G012690 vs. NCBI nr
Match: KAG6579139.1 (hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (266), Expect = 4.27e-27
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 22  TSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLLI- 81
           TS PPL  +LF AA+LIS A+S   +FLQ  FPRIAL F KIGA++AA+G CI+ASLL+ 
Sbjct: 56  TSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACIMASLLLK 115

Query: 82  HQNFAWISWLACGFSLMAFLLSFR 104
           HQNF+WI WLACGF+ MAF+LSF+
Sbjct: 116 HQNFSWIPWLACGFAFMAFVLSFK 139

BLAST of CsGy5G012690 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 164 bits (416), Expect = 5.75e-50
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 20  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL 79
           SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL
Sbjct: 72  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL 131

Query: 80  IHQNFAWISWLACGFSLMAFLLSFRG 105
           IHQNFAWISWLACGFSLMAFLLSFRG
Sbjct: 132 IHQNFAWISWLACGFSLMAFLLSFRG 157

BLAST of CsGy5G012690 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 4.07e-43
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 0

Query: 20  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL 79
           S  SSPPLLTHLF AAVLISFAVSF G+FLQ+GFPRIALLFEKIGALIAAIGVCI+ASLL
Sbjct: 61  SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLL 120

Query: 80  IHQNFAWISWLACGFSLMAFLLSFRG 105
           IHQNFAWISWLA GFSLMAF+LSFRG
Sbjct: 121 IHQNFAWISWLASGFSLMAFVLSFRG 146

BLAST of CsGy5G012690 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 1.45e-27
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 16  FVHYSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCIL 75
           F+    TS PPLL H F AAV ISFAVSF  +FL + FPR A LFEK+GAL +A GVC +
Sbjct: 75  FISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFSAFGVCFI 134

Query: 76  AS-LLIHQNFAWISWLACGFSLMAFLLSFR 104
           AS LL+HQNFAWI W+AC FS++ F LSF+
Sbjct: 135 ASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of CsGy5G012690 vs. ExPASy TrEMBL
Match: A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.82e-19
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 24  SPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLLIHQN 83
           SPP L+ L G  +L +F  SF GV LQ  FP+IA L +  GAL+AAIGVCI+ S L+H N
Sbjct: 82  SPPPLSELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQMFGALLAAIGVCIMGSPLLHPN 141

Query: 84  FAWISWLACGFSLMAFLLSFR 104
             WI WLACG  L AF+ SF+
Sbjct: 142 LTWIRWLACGLILPAFITSFK 162

BLAST of CsGy5G012690 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.60e-18
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 0

Query: 16  FVHYSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCIL 75
           F+  + +SS PL + LF A +L SF  S+ GV LQ  FP+ A L +  GAL AAIG CI+
Sbjct: 76  FLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALFAAIGTCII 135

Query: 76  ASLLIHQNFAWISWLACGFSLMAFLLSFR 104
            SLL++ NF WI WLA G  L AF++SF+
Sbjct: 136 GSLLLYPNFTWICWLAAGLILPAFIISFK 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN49803.11.19e-49100.00hypothetical protein Csa_004681 [Cucumis sativus][more]
KAA0050246.18.41e-4389.53putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KAG6579136.11.84e-2867.86hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49808.12.99e-2762.22hypothetical protein Csa_004650 [Cucumis sativus][more]
KAG6579139.14.27e-2765.48hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KJN85.75e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1[more]
A0A5A7U7U14.07e-4389.53Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KJP21.45e-2762.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
A0A5D3BEH83.82e-1955.56Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KQ031.60e-1850.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G012690.2CsGy5G012690.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane