Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCAAGTTCACAGCAAATTTCCATAGATATGAATCACCTCTATTCTCTCATCACATCAATTAACGAAAGAAATCCTGAAATCAACGGCTTACCAATTTGCATCATAATGCAGACTGCATCACCAGCCAACAGCTCTAAGACTGAGAATAATGTTGGGACGACAATTTTTGGCCTTACTTTTCAGGCAGTTTTGGCTTTGTTCATTACCTCGTCCACTTCATCTCCTCCGCTTTTGACACATCTCTTTGGGGCTGCAGTCTTGATTAGCTTTGCAGTTTCATTTCCTGGAGTTTTCCTCCAAGATGGATTCCCGAGAATCGCACTTCTGTTCGAAAAGATCGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCCTAGCAAGTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCTTGTGGCTTCTCCTTGATGGCTTTTTTGCTATCATTTAGAGGGTAG
mRNA sequence
ATGGAATCAAGTTCACAGCAAATTTCCATAGATATGAATCACCTCTATTCTCTCATCACATCAATTAACGAAAGAAATCCTGAAATCAACGGCTTACCAATTTGCATCATAATGCAGACTGCATCACCAGCCAACAGCTCTAAGACTGAGAATAATGTTGGGACGACAATTTTTGGCCTTACTTTTCAGGCAGTTTTGGCTTTGTTCATTACCTCGTCCACTTCATCTCCTCCGCTTTTGACACATCTCTTTGGGGCTGCAGTCTTGATTAGCTTTGCAGTTTCATTTCCTGGAGTTTTCCTCCAAGATGGATTCCCGAGAATCGCACTTCTGTTCGAAAAGATCGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCCTAGCAAGTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCTTGTGGCTTCTCCTTGATGGCTTTTTTGCTATCATTTAGAGGGTAG
Coding sequence (CDS)
ATGGAATCAAGTTCACAGCAAATTTCCATAGATATGAATCACCTCTATTCTCTCATCACATCAATTAACGAAAGAAATCCTGAAATCAACGGCTTACCAATTTGCATCATAATGCAGACTGCATCACCAGCCAACAGCTCTAAGACTGAGAATAATGTTGGGACGACAATTTTTGGCCTTACTTTTCAGGCAGTTTTGGCTTTGTTCATTACCTCGTCCACTTCATCTCCTCCGCTTTTGACACATCTCTTTGGGGCTGCAGTCTTGATTAGCTTTGCAGTTTCATTTCCTGGAGTTTTCCTCCAAGATGGATTCCCGAGAATCGCACTTCTGTTCGAAAAGATCGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCCTAGCAAGTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCTTGTGGCTTCTCCTTGATGGCTTTTTTGCTATCATTTAGAGGGTAG
Protein sequence
MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTIFGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG*
Homology
BLAST of CsGy5G012648 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 295 bits (755), Expect = 2.19e-100
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0
Query: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTIFGL 60
MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTI GL
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60
Query: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA
Sbjct: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
Query: 121 AIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG 157
AIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG
Sbjct: 121 AIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG 157
BLAST of CsGy5G012648 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 242 bits (618), Expect = 1.15e-79
Identity = 128/146 (87.67%), Postives = 133/146 (91.10%), Query Frame = 0
Query: 12 MNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTIFGLTFQAVLALFIT 71
MN LYS IT+INERNPEIN LPICI MQ SPANSSKTENNVG TI GLTFQAVLALFIT
Sbjct: 1 MNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFIT 60
Query: 72 SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL 131
S SSPPLLTHLF AAVLISFAVSF G+FLQ+GFPRIALLFEKIGALIAAIGVCI+ASLL
Sbjct: 61 SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLL 120
Query: 132 IHQNFAWISWLACGFSLMAFLLSFRG 157
IHQNFAWISWLA GFSLMAF+LSFRG
Sbjct: 121 IHQNFAWISWLASGFSLMAFVLSFRG 146
BLAST of CsGy5G012648 vs. NCBI nr
Match:
KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 149 bits (377), Expect = 6.26e-43
Identity = 85/157 (54.14%), Postives = 111/157 (70.70%), Query Frame = 0
Query: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTIFGL 60
M S+ Q +SIDMN + I ++ P +P + P +SS+T NN+G +FGL
Sbjct: 1 MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 60
Query: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
TFQAVLALFI+ TS PPLL H+F AA+LISFA+S +FLQ +PRIAL KIGAL+A
Sbjct: 61 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 120
Query: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156
AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 151
BLAST of CsGy5G012648 vs. NCBI nr
Match:
KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])
HSP 1 Score: 145 bits (365), Expect = 6.13e-41
Identity = 88/165 (53.33%), Postives = 112/165 (67.88%), Query Frame = 0
Query: 1 MESSSQQISIDMNHLYSLITSINERNPEI-------NGLPICIIMQTASPANSSKTENNV 60
M S+S Q S+DM+ S I +I++RN + N LP+ I MQ SP ++ + +
Sbjct: 1 MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQ-SPQATADSSQKL 60
Query: 61 GTTIFGLTFQAVLALFITSS-TSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLF 120
G I L+FQAVLALFI+S TS PPLL H F AAV ISFAVSF +FL + FPR A LF
Sbjct: 61 GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 120
Query: 121 EKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156
EK+GAL +A GVC +AS LL+HQNFAWI W+AC FS++ F LSF+
Sbjct: 121 EKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of CsGy5G012648 vs. NCBI nr
Match:
KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 143 bits (360), Expect = 1.64e-40
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 0
Query: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTIFGL 60
M S+ Q +SIDMN +SI + ++ P + NN+G +FGL
Sbjct: 1 MGSTPQHVSIDMNQF----SSIQGASDGLHREP--------------QARNNLGKIVFGL 60
Query: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
TFQAVLALFI++ TS PPLL +LF AA+LIS A+S +FLQ FPRIAL F KIGA++A
Sbjct: 61 TFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLA 120
Query: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156
A+G CI+ASLL+ HQNF+WI WLACGF+LMAF+LSF+
Sbjct: 121 AVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 139
BLAST of CsGy5G012648 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 295 bits (755), Expect = 1.06e-100
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0
Query: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTIFGL 60
MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTI GL
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60
Query: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA
Sbjct: 61 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120
Query: 121 AIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG 157
AIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG
Sbjct: 121 AIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG 157
BLAST of CsGy5G012648 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 242 bits (618), Expect = 5.59e-80
Identity = 128/146 (87.67%), Postives = 133/146 (91.10%), Query Frame = 0
Query: 12 MNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTIFGLTFQAVLALFIT 71
MN LYS IT+INERNPEIN LPICI MQ SPANSSKTENNVG TI GLTFQAVLALFIT
Sbjct: 1 MNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFIT 60
Query: 72 SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILASLL 131
S SSPPLLTHLF AAVLISFAVSF G+FLQ+GFPRIALLFEKIGALIAAIGVCI+ASLL
Sbjct: 61 SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLL 120
Query: 132 IHQNFAWISWLACGFSLMAFLLSFRG 157
IHQNFAWISWLA GFSLMAF+LSFRG
Sbjct: 121 IHQNFAWISWLASGFSLMAFVLSFRG 146
BLAST of CsGy5G012648 vs. ExPASy TrEMBL
Match:
A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)
HSP 1 Score: 145 bits (365), Expect = 2.97e-41
Identity = 88/165 (53.33%), Postives = 112/165 (67.88%), Query Frame = 0
Query: 1 MESSSQQISIDMNHLYSLITSINERNPEI-------NGLPICIIMQTASPANSSKTENNV 60
M S+S Q S+DM+ S I +I++RN + N LP+ I MQ SP ++ + +
Sbjct: 1 MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQ-SPQATADSSQKL 60
Query: 61 GTTIFGLTFQAVLALFITSS-TSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLF 120
G I L+FQAVLALFI+S TS PPLL H F AAV ISFAVSF +FL + FPR A LF
Sbjct: 61 GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 120
Query: 121 EKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156
EK+GAL +A GVC +AS LL+HQNFAWI W+AC FS++ F LSF+
Sbjct: 121 EKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of CsGy5G012648 vs. ExPASy TrEMBL
Match:
A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)
HSP 1 Score: 128 bits (322), Expect = 9.02e-35
Identity = 78/165 (47.27%), Postives = 97/165 (58.79%), Query Frame = 0
Query: 2 ESSSQQISIDMNHLYSLITSINERNPEING----------LPICIIMQTASPANSSKTEN 61
E+ +IS+DMN LYS IT++ RNP I+ LPI I MQ SP NS +
Sbjct: 3 ETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPSPVNSPQ--- 62
Query: 62 NVGTTIFGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALL 121
G T FQA+L LF+ S PPL + L G +L +F SF GV LQ FP+IA L
Sbjct: 63 -FGNTFVSSNFQAILGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAHL 122
Query: 122 FEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFR 156
+ GAL+AAIGVCI+ S L+H N WI WLACG L AF+ SF+
Sbjct: 123 LQMFGALLAAIGVCIMGSPLLHPNLTWIRWLACGLILPAFITSFK 162
BLAST of CsGy5G012648 vs. ExPASy TrEMBL
Match:
A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)
HSP 1 Score: 124 bits (312), Expect = 3.10e-33
Identity = 77/166 (46.39%), Postives = 101/166 (60.84%), Query Frame = 0
Query: 2 ESSSQQISIDMNHLYSLITSINERNPEING----------LPICIIMQTASPANSSKTEN 61
E+ +IS+DMN L SLI ++ RNP I+ LPI I MQ SP NS +
Sbjct: 3 ETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ--- 62
Query: 62 NVGTTIFGLTFQAVLALFIT-SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIAL 121
G T LTFQA++ LF++ + +SS PL + LF A +L SF S+ GV LQ FP+ A
Sbjct: 63 -FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQ 122
Query: 122 LFEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFR 156
L + GAL AAIG CI+ SLL++ NF WI WLA G L AF++SF+
Sbjct: 123 LLQTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN49803.1 | 2.19e-100 | 99.36 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
| KAA0050246.1 | 1.15e-79 | 87.67 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
| KAG6579137.1 | 6.26e-43 | 54.14 | hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN49808.1 | 6.13e-41 | 53.33 | hypothetical protein Csa_004650 [Cucumis sativus] | [more] |
| KAG6579136.1 | 1.64e-40 | 53.50 | hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KJN8 | 1.06e-100 | 99.36 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
| A0A5A7U7U1 | 5.59e-80 | 87.67 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A0A0KJP2 | 2.97e-41 | 53.33 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1 | [more] |
| A0A5D3BEH8 | 9.02e-35 | 47.27 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A0A0KQ03 | 3.10e-33 | 46.39 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
