CsGy5G011955 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G011955
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 14164746 .. 14165102 (+)
RNA-Seq Expression	CsGy5G011955
Synteny	CsGy5G011955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCTAAGTACACTAAGAACCTACAGCATCGTCACCGCTGCGTGGGAAGGTTAATTCTTCTAACTCTGGTATTCTCGTTGAACAAGCAGTTCACATCCGACTGCCCGCGTAGTGGGGGAAGCTCGCTCGCTAACTTTGCACTTCGGCCAAAATGCCGAAAAAAGGCTAAGGCCGAAGGAGGTCTGACTCCTTCGCTCAAGGAAGAATTGCCCGATTGGATATATATCTCGGTGCGGAGAGAGGAAAGGATCACGGAAGCCTCAGTCTCAGTACGAAAGGGGCAAAAAGCTGGAAAAAGCATACTGGCTTCACCTTGCCCTAGGATGGGGTCCGCCGGATCTTTTAAGGCATAG

mRNA sequence

ATGCAATCTAAGTACACTAAGAACCTACAGCATCGTCACCGCTGCGTGGGAAGGTTAATTCTTCTAACTCTGGTATTCTCGTTGAACAAGCAGTTCACATCCGACTGCCCGCGTAGTGGGGGAAGCTCGCTCGCTAACTTTGCACTTCGGCCAAAATGCCGAAAAAAGGCTAAGGCCGAAGGAGGTCTGACTCCTTCGCTCAAGGAAGAATTGCCCGATTGGATATATATCTCGGTGCGGAGAGAGGAAAGGATCACGGAAGCCTCAGTCTCAGTACGAAAGGGGCAAAAAGCTGGAAAAAGCATACTGGCTTCACCTTGCCCTAGGATGGGGTCCGCCGGATCTTTTAAGGCATAG

Coding sequence (CDS)

ATGCAATCTAAGTACACTAAGAACCTACAGCATCGTCACCGCTGCGTGGGAAGGTTAATTCTTCTAACTCTGGTATTCTCGTTGAACAAGCAGTTCACATCCGACTGCCCGCGTAGTGGGGGAAGCTCGCTCGCTAACTTTGCACTTCGGCCAAAATGCCGAAAAAAGGCTAAGGCCGAAGGAGGTCTGACTCCTTCGCTCAAGGAAGAATTGCCCGATTGGATATATATCTCGGTGCGGAGAGAGGAAAGGATCACGGAAGCCTCAGTCTCAGTACGAAAGGGGCAAAAAGCTGGAAAAAGCATACTGGCTTCACCTTGCCCTAGGATGGGGTCCGCCGGATCTTTTAAGGCATAG

Protein sequence

MQSKYTKNLQHRHRCVGRLILLTLVFSLNKQFTSDCPRSGGSSLANFALRPKCRKKAKAEGGLTPSLKEELPDWIYISVRREERITEASVSVRKGQKAGKSILASPCPRMGSAGSFKA*

Homology

[Close]

BLAST of CsGy5G011955 vs. NCBI nr
Match: KAE8648259.1 (hypothetical protein Csa_018504, partial [Cucumis sativus])

HSP 1 Score: 126 bits (317), Expect = 1.32e-35
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MQSKYTKNLQHRHRCVGRLILLTLVFSLNKQFTSDCPRSGGSSLANFALRPKCRKKAKAE 60
          MQSKYTKNLQHRHRCVGRLILLTLV SLNKQFTSDCPRSGGSSLANFALRPKCRKKAKAE
Sbjct: 1  MQSKYTKNLQHRHRCVGRLILLTLVLSLNKQFTSDCPRSGGSSLANFALRPKCRKKAKAE 60

[Close]

BLAST of CsGy5G011955 vs. NCBI nr
Match: KAE8648268.1 (hypothetical protein Csa_017818 [Cucumis sativus])

HSP 1 Score: 127 bits (318), Expect = 2.89e-34
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MQSKYTKNLQHRHRCVGRLILLTLVFSLNKQFTSDCPRSGGSSLANFALRPKCRKKAKAE 60
           MQ KYTKNLQHRHRCVGRLILLTLV SLNKQFTS+CP +GGSSLANFA RPKCRKKAKAE
Sbjct: 1   MQPKYTKNLQHRHRCVGRLILLTLVLSLNKQFTSNCPHNGGSSLANFAFRPKCRKKAKAE 60

Query: 61  GGLTPSLKEELPDWIYISVRREERITEASVS-VRKGQKAGKS 101
           GGL   L++  P   YIS  RE + +    S   +G+K  K+
Sbjct: 61  GGLLLRLRKNCPIG-YISWCRERKGSRKPQSQYERGKKLEKA 101

[Close]

BLAST of CsGy5G011955 vs. NCBI nr
Match: KAE8648253.1 (hypothetical protein Csa_018473, partial [Cucumis sativus])

HSP 1 Score: 116 bits (291), Expect = 1.20e-31
Identity = 56/61 (91.80%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MQSKYTKNLQHRHRCVGRLILLTLVFSLNKQFTSDCPRSGGSSLANFALRPKCRKKAKAE 60
          MQSKYTKNLQHRH   GRLILLTLV SLNKQFT DCPRSGGSSLANFALRPKCRKKAKAE
Sbjct: 1  MQSKYTKNLQHRHAACGRLILLTLVLSLNKQFTFDCPRSGGSSLANFALRPKCRKKAKAE 60

[Close]

BLAST of CsGy5G011955 vs. ExPASy TrEMBL
Match: A0A0A0KRC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G349070 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.26e-09
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 34  SDCPRSG---GSSLANFALRPKCRKKAKAEGGLTPSLKEEL 71
           S+ P  G   GSSLANFALRPKCRKKAKAEGGLTPSLK ++
Sbjct: 141 SESPHQGFWRGSSLANFALRPKCRKKAKAEGGLTPSLKVDV 181

The following BLAST results are available for this feature:

BLAST of CsGy5G011955 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G011955 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648259.1	1.32e-35	98.36	hypothetical protein Csa_018504, partial [Cucumis sativus]	[more]
KAE8648268.1	2.89e-34	66.67	hypothetical protein Csa_017818 [Cucumis sativus]	[more]
KAE8648253.1	1.20e-31	91.80	hypothetical protein Csa_018473, partial [Cucumis sativus]	[more]

BLAST of CsGy5G011955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRC0	3.26e-09	75.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G349070 PE=4 SV=1	[more]

BLAST of CsGy5G011955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G011955.1	CsGy5G011955.1	mRNA