CsGy5G010860 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G010860
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
LocationGy14Chr5: 11447455 .. 11447826 (+)
RNA-Seq ExpressionCsGy5G010860
SyntenyCsGy5G010860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCTCAACCTTATAGATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAAAATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCTTCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTTGGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA

mRNA sequence

ATGGTTTCTCAACCTTATAGATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAAAATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCTTCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTTGGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA

Coding sequence (CDS)

ATGGTTTCTCAACCTTATAGATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAAAATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCTTCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTTGGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA

Protein sequence

MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKCGVG*
Homology
BLAST of CsGy5G010860 vs. ExPASy Swiss-Prot
Match: P0C8Q6 (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-19
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 0

Query: 6   YRSICTEVINV-LLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGL 65
           +R + T++ N   L  +++ +  N I +F++Q  S DDP+L  L+P L+ ++VETVLNG 
Sbjct: 24  HRPLTTKLDNTRFLHPNQSKLAQNLIVIFTRQPFSPDDPELLILSPELNTKVVETVLNGF 83

Query: 66  RSWKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVLN--------- 123
           + W +A++FF WASKQ  Y+++ Y + A+      ARQNA L+A+ +DVLN         
Sbjct: 84  KRWGLAYLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGA 143

BLAST of CsGy5G010860 vs. NCBI nr
Match: KAE8648181.1 (hypothetical protein Csa_018533 [Cucumis sativus])

HSP 1 Score: 241 bits (616), Expect = 3.55e-80
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 7   RSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 66
           +SICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS
Sbjct: 15  KSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 74

Query: 67  WKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKCGVG 123
           WKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKCGVG
Sbjct: 75  WKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKCGVG 131

BLAST of CsGy5G010860 vs. NCBI nr
Match: XP_011654469.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654470.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654471.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >KAE8648179.1 hypothetical protein Csa_018469 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 1.53e-53
Identity = 97/115 (84.35%), Postives = 100/115 (86.96%), Query Frame = 0

Query: 2   VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVL 61
           VSQPYRSICTEVINVL P DETYI NNFISLFSQQK SLDDPQLKNLAPSL+PRIVETVL
Sbjct: 47  VSQPYRSICTEVINVLPPLDETYISNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVETVL 106

Query: 62  NGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------RQNALLRAVAMDVLNF 110
           NGL SWKIAHMFFTWASKQH Y+HNC TF AIA      R+NA LRAVAMDVLNF
Sbjct: 107 NGLGSWKIAHMFFTWASKQHGYRHNCNTFNAIASILSHARKNAPLRAVAMDVLNF 161

BLAST of CsGy5G010860 vs. NCBI nr
Match: XP_038894372.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Benincasa hispida])

HSP 1 Score: 172 bits (435), Expect = 7.33e-47
Identity = 87/115 (75.65%), Postives = 95/115 (82.61%), Query Frame = 0

Query: 2   VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVL 61
           VS+PYRSICTEVINV    DET+I +NFISLFSQQK S DDP+LKNLA  L+ RIVETVL
Sbjct: 69  VSRPYRSICTEVINVRPSLDETHISSNFISLFSQQKFSPDDPKLKNLASRLNTRIVETVL 128

Query: 62  NGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------RQNALLRAVAMDVLNF 110
           NGLRSWK+AHMFFTWASKQH Y+HNCYTF AIA      RQNA LRA+A DVLNF
Sbjct: 129 NGLRSWKVAHMFFTWASKQHGYRHNCYTFNAIASILSHARQNAPLRAIAKDVLNF 183

BLAST of CsGy5G010860 vs. NCBI nr
Match: KAG6601987.1 (putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (392), Expect = 3.55e-45
Identity = 77/115 (66.96%), Postives = 90/115 (78.26%), Query Frame = 0

Query: 1   MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETV 60
           +VS+ YR IC+E INVL   DE++I NNFISLFSQ+K S DDP+LK LAP L+ +IVE V
Sbjct: 38  VVSKSYRPICSEAINVLPSHDESHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENV 97

Query: 61  LNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------RQNALLRAVAMDVLN 109
           LNGLR+WK+AHMFF WASKQH Y+HNCYTF  IA      RQNA LRA+A DVLN
Sbjct: 98  LNGLRNWKVAHMFFIWASKQHGYRHNCYTFNVIASILSHARQNAPLRAIATDVLN 152

BLAST of CsGy5G010860 vs. NCBI nr
Match: KAA0056820.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99942.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (419), Expect = 9.31e-45
Identity = 85/115 (73.91%), Postives = 92/115 (80.00%), Query Frame = 0

Query: 1   MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETV 60
           MVSQ YRS+CTEVIN+L   DET I NNFISL SQQK SLDDP+LKNLA SL+PRIVETV
Sbjct: 1   MVSQRYRSVCTEVINILPSPDETCISNNFISLLSQQKFSLDDPELKNLASSLNPRIVETV 60

Query: 61  LNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------RQNALLRAVAMDVLN 109
           LNGLR W+IAHMFFTWASKQ  Y+HNCYTF AIA      R+ A LRAVA DVL 
Sbjct: 61  LNGLRRWEIAHMFFTWASKQQGYRHNCYTFNAIASVLSHARKKAPLRAVARDVLT 115

BLAST of CsGy5G010860 vs. ExPASy TrEMBL
Match: A0A0A0KL85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021860 PE=4 SV=1)

HSP 1 Score: 255 bits (651), Expect = 6.04e-86
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETV 60
           MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETV
Sbjct: 1   MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETV 60

Query: 61  LNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKC 120
           LNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKC
Sbjct: 61  LNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKC 120

Query: 121 GVG 123
           GVG
Sbjct: 121 GVG 123

BLAST of CsGy5G010860 vs. ExPASy TrEMBL
Match: A0A0A0KMI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 6.96e-54
Identity = 97/115 (84.35%), Postives = 100/115 (86.96%), Query Frame = 0

Query: 2   VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVL 61
           VSQPYRSICTEVINVL P DETYI NNFISLFSQQK SLDDPQLKNLAPSL+PRIVETVL
Sbjct: 37  VSQPYRSICTEVINVLPPLDETYISNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVETVL 96

Query: 62  NGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------RQNALLRAVAMDVLNF 110
           NGL SWKIAHMFFTWASKQH Y+HNC TF AIA      R+NA LRAVAMDVLNF
Sbjct: 97  NGLGSWKIAHMFFTWASKQHGYRHNCNTFNAIASILSHARKNAPLRAVAMDVLNF 151

BLAST of CsGy5G010860 vs. ExPASy TrEMBL
Match: A0A5A7UP07 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00750 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 4.51e-45
Identity = 85/115 (73.91%), Postives = 92/115 (80.00%), Query Frame = 0

Query: 1   MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETV 60
           MVSQ YRS+CTEVIN+L   DET I NNFISL SQQK SLDDP+LKNLA SL+PRIVETV
Sbjct: 1   MVSQRYRSVCTEVINILPSPDETCISNNFISLLSQQKFSLDDPELKNLASSLNPRIVETV 60

Query: 61  LNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------RQNALLRAVAMDVLN 109
           LNGLR W+IAHMFFTWASKQ  Y+HNCYTF AIA      R+ A LRAVA DVL 
Sbjct: 61  LNGLRRWEIAHMFFTWASKQQGYRHNCYTFNAIASVLSHARKKAPLRAVARDVLT 115

BLAST of CsGy5G010860 vs. ExPASy TrEMBL
Match: A0A6J1CLB5 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012005 PE=3 SV=1)

HSP 1 Score: 166 bits (419), Expect = 5.03e-45
Identity = 85/115 (73.91%), Postives = 94/115 (81.74%), Query Frame = 0

Query: 2   VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVL 61
           V + YR ICTEVINVL P DET+I NNFISLFSQ+K S DDP+LK LAP L+ +IVETVL
Sbjct: 37  VVKSYRPICTEVINVLPPLDETHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVETVL 96

Query: 62  NGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------RQNALLRAVAMDVLNF 110
           NGLRSWKIAHMFF WASKQ+ Y+HNCYT+ AIA      RQNA LRAVAMDVLNF
Sbjct: 97  NGLRSWKIAHMFFIWASKQNGYRHNCYTYNAIASILSRARQNAPLRAVAMDVLNF 151

BLAST of CsGy5G010860 vs. ExPASy TrEMBL
Match: A0A1S3BTR3 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493457 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 5.49e-45
Identity = 85/115 (73.91%), Postives = 92/115 (80.00%), Query Frame = 0

Query: 1   MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETV 60
           MVSQ YRS+CTEVIN+L   DET I NNFISL SQQK SLDDP+LKNLA SL+PRIVETV
Sbjct: 67  MVSQRYRSVCTEVINILPSPDETCISNNFISLLSQQKFSLDDPELKNLASSLNPRIVETV 126

Query: 61  LNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------RQNALLRAVAMDVLN 109
           LNGLR W+IAHMFFTWASKQ  Y+HNCYTF AIA      R+ A LRAVA DVL 
Sbjct: 127 LNGLRRWEIAHMFFTWASKQQGYRHNCYTFNAIASVLSHARKKAPLRAVARDVLT 181

BLAST of CsGy5G010860 vs. TAIR 10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-20
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 0

Query: 6   YRSICTEVINV-LLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGL 65
           +R + T++ N   L  +++ +  N I +F++Q  S DDP+L  L+P L+ ++VETVLNG 
Sbjct: 24  HRPLTTKLDNTRFLHPNQSKLAQNLIVIFTRQPFSPDDPELLILSPELNTKVVETVLNGF 83

Query: 66  RSWKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVLN--------- 123
           + W +A++FF WASKQ  Y+++ Y + A+      ARQNA L+A+ +DVLN         
Sbjct: 84  KRWGLAYLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGA 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C8Q65.8e-1937.59Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
Match NameE-valueIdentityDescription
KAE8648181.13.55e-8099.15hypothetical protein Csa_018533 [Cucumis sativus][more]
XP_011654469.11.53e-5384.35putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [C... [more]
XP_038894372.17.33e-4775.65LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08... [more]
KAG6601987.13.55e-4566.96putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cu... [more]
KAA0056820.19.31e-4573.91putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ... [more]
Match NameE-valueIdentityDescription
A0A0A0KL856.04e-86100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021860 PE=4 SV=1[more]
A0A0A0KMI56.96e-5484.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1[more]
A0A5A7UP074.51e-4573.91Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A6J1CLB55.03e-4573.91putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
A0A1S3BTR35.49e-4573.91putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
Match NameE-valueIdentityDescription
AT5G08310.14.1e-2037.59Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 27..113
NoneNo IPR availablePANTHERPTHR47938:SF24PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL-RELATEDcoord: 27..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G010860.2CsGy5G010860.2mRNA