CsGy5G010768 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G010768
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Ty3/gypsy retrotransposon protein
Location	Gy14Chr5: 11371224 .. 11371921 (+)
RNA-Seq Expression	CsGy5G010768
Synteny	CsGy5G010768

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTTATGGACGGCCCCCTCCCCCTATCATTTCCTATGGCCAAGCATCTACAACCCCAAATGATTTAGTGGAATATTAGTTGCAATCGAGAGATGAAATGTTAGCTATCCTGAAGAGTCATTTGCAACATGCCCAAGAACAAATGAAGAAGTTTGCTGATGTGCACCGTTGCAATGTGATTTTCGACATTGGAGACTGGGTCTATCTGAAAGTACAACCCTATAGGCAACAGTCGGTAACGAAGAAGCTTTGTGAAAAATTATCTTTCAGATATTTTAGGCCATACATGATCTTGGGTAGAGTTGGAGAAGTAGCTTACATGCTGGGCCTTCCAAAAACTGCCAAAATACATCTGGTTTTCCACGTATCACAACTCAAGAAGGCAGTGGAAGACCAACATCAAATTCAACCGAACATAGCAATGCTCAATGATCAAATGGAGCTGGTGTTAGAACCCGAAAATGTGACCCAAGACACGAAGCAACATGGGAGTTCCTAAACGAGATTGGGAGTATTTAGTCCAGTGGAAAGATAAACCAAGACACGAAGCAACATGAGAGTTCCTAAGCAACGTGGCAGCAACAGAATGAGGTTATTGTGAGGACAAGGTGTCTCTTCTCCATGGGGGTATTGCGAGGCCTCCAATCACACAGTTTACTAAAGAAAGGGTAAGAAGGAAAATTCAACCTAGGCAACAT

mRNA sequence

AGTTTATGGACGGCCCCCTCCCCCTATCATTTCCTATGGCCAAGCATCTACAACCCCAAATGATTTAGTGGAATATTAGTTGCAATCGAGAGATGAAATGTTAGCTATCCTGAAGAGTCATTTGCAACATGCCCAAGAACAAATGAAGAAGTTTGCTGATGTGCACCGTTGCAATGTGATTTTCGACATTGGAGACTGGGTCTATCTGAAAGTACAACCCTATAGGCAACAGTCGGTAACGAAGAAGCTTTGTGAAAAATTATCTTTCAGATATTTTAGGCCATACATGATCTTGGGTAGAGTTGGAGAAGTAGCTTACATGCTGGGCCTTCCAAAAACTGCCAAAATACATCTGGTTTTCCACGTATCACAACTCAAGAAGGCAGTGGAAGACCAACATCAAATTCAACCGAACATAGCAATGCTCAATGATCAAATGGAGCTGGTGTTAGAACCCGAAAATGTGACCCAAGACACGAAGCAACATGGGAGTTCCTAAACGAGATTGGGAGTATTTAGTCCAGTGGAAAGATAAACCAAGACACGAAGCAACATGAGAGTTCCTAAGCAACGTGGCAGCAACAGAATGAGGTTATTGTGAGGACAAGGTGTCTCTTCTCCATGGGGGTATTGCGAGGCCTCCAATCACACAGTTTACTAAAGAAAGGGTAAGAAGGAAAATTCAACCTAGGCAACAT

Coding sequence (CDS)

ATGTTAGCTATCCTGAAGAGTCATTTGCAACATGCCCAAGAACAAATGAAGAAGTTTGCTGATGTGCACCGTTGCAATGTGATTTTCGACATTGGAGACTGGGTCTATCTGAAAGTACAACCCTATAGGCAACAGTCGGTAACGAAGAAGCTTTGTGAAAAATTATCTTTCAGATATTTTAGGCCATACATGATCTTGGGTAGAGTTGGAGAAGTAGCTTACATGCTGGGCCTTCCAAAAACTGCCAAAATACATCTGGTTTTCCACGTATCACAACTCAAGAAGGCAGTGGAAGACCAACATCAAATTCAACCGAACATAGCAATGCTCAATGATCAAATGGAGCTGGTGTTAGAACCCGAAAATGTGACCCAAGACACGAAGCAACATGGGAGTTCCTAA

Protein sequence

MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEPENVTQDTKQHGSS*

Homology

[Close]

BLAST of CsGy5G010768 vs. NCBI nr
Match: KAA0052161.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK05126.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (532), Expect = 3.70e-62
Identity = 101/125 (80.80%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYF 60
           ML  LK HLQHAQEQMKKFADVHR +V+FDIGD VYLK+QPYRQQSV KK CEKLS RYF
Sbjct: 424 MLTALKRHLQHAQEQMKKFADVHRRDVVFDIGDRVYLKLQPYRQQSVVKKRCEKLSPRYF 483

Query: 61  RPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEP 120
            PY +LGRVGEV Y+LGLP+TAKIH +FHVSQLKKAV D+HQ+ PNIAM+NDQMELVLEP
Sbjct: 484 GPYTVLGRVGEVTYLLGLPETAKIHPIFHVSQLKKAVGDKHQVYPNIAMINDQMELVLEP 543

Query: 121 ENVTQ 125
           ENVTQ
Sbjct: 544 ENVTQ 548

[Close]

BLAST of CsGy5G010768 vs. NCBI nr
Match: KAA0060331.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK22080.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (505), Expect = 1.10e-59
Identity = 97/125 (77.60%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYF 60
           MLA LK HLQHAQE+MKKFA+VHR +V+FDIGD V+LK+Q YRQQSV KK CEKLS RYF
Sbjct: 136 MLAALKRHLQHAQERMKKFANVHRRDVVFDIGDRVFLKLQHYRQQSVAKKRCEKLSPRYF 195

Query: 61  RPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEP 120
            PY +LGRVGEVAY+L LP+TAKIH VFHVSQLKKAV D+HQ+ P+IAM+NDQMELV+EP
Sbjct: 196 GPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAVGDKHQVYPDIAMINDQMELVMEP 255

Query: 121 ENVTQ 125
           ENVTQ
Sbjct: 256 ENVTQ 260

[Close]

BLAST of CsGy5G010768 vs. NCBI nr
Match: TYK28461.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (493), Expect = 4.60e-58
Identity = 91/125 (72.80%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYF 60
           ML +LK HLQHAQE+M+KFA++HR +V+FDIGD VYLK+QPYRQQSV KK CEKLS RYF
Sbjct: 178 MLKVLKRHLQHAQERMQKFANIHRRDVVFDIGDRVYLKLQPYRQQSVAKKRCEKLSPRYF 237

Query: 61  RPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEP 120
            PY +LGRVGEVAY+L LP+TAKIH VFHVSQLKKA+ D+H + P++ ++NDQMELVLEP
Sbjct: 238 GPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAIGDKHPVYPDVTLINDQMELVLEP 297

Query: 121 ENVTQ 125
           ENV Q
Sbjct: 298 ENVLQ 302

[Close]

BLAST of CsGy5G010768 vs. NCBI nr
Match: KAA0031735.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (492), Expect = 7.57e-58
Identity = 92/124 (74.19%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 2   LAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFR 61
           LA+LK HLQ AQEQMKKF DVHR  V+FDIGDWVYLK+QPYRQQSV K+ C+KL  +YF 
Sbjct: 83  LAVLKQHLQQAQEQMKKFFDVHRREVVFDIGDWVYLKLQPYRQQSVAKRRCDKLCPKYFG 142

Query: 62  PYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEPE 121
           PYM+LGRVGEVAY+L LP+ AKIH VFHVSQLK+AV D+H+IQP+I+ LNDQMELVL P+
Sbjct: 143 PYMVLGRVGEVAYLLDLPENAKIHPVFHVSQLKRAVGDKHRIQPDISALNDQMELVLVPD 202

Query: 122 NVTQ 125
            VTQ
Sbjct: 203 QVTQ 206

[Close]

BLAST of CsGy5G010768 vs. NCBI nr
Match: KAA0051271.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK29989.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 8.09e-57
Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 1   MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYF 60
           ML  LK HLQHAQE+MKKF D+HR +V+FDIGD VYLK+QPYRQQSVTKK CEKL  RYF
Sbjct: 343 MLKALKRHLQHAQERMKKFVDIHRRDVVFDIGDKVYLKLQPYRQQSVTKKRCEKLLPRYF 402

Query: 61  RPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEP 120
            PY +LGRVGEVAY+L L KTAKIH VFHVSQLKKAV D+H + P++ M+NDQMELVLEP
Sbjct: 403 GPYTVLGRVGEVAYLLDLSKTAKIHPVFHVSQLKKAVGDKHPVYPDVTMINDQMELVLEP 462

Query: 121 ENVTQ 125
           E VTQ
Sbjct: 463 EYVTQ 467

[Close]

BLAST of CsGy5G010768 vs. ExPASy TrEMBL
Match: A0A5D3C3X8 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00300 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 1.79e-62
Identity = 101/125 (80.80%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYF 60
           ML  LK HLQHAQEQMKKFADVHR +V+FDIGD VYLK+QPYRQQSV KK CEKLS RYF
Sbjct: 424 MLTALKRHLQHAQEQMKKFADVHRRDVVFDIGDRVYLKLQPYRQQSVVKKRCEKLSPRYF 483

Query: 61  RPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEP 120
            PY +LGRVGEV Y+LGLP+TAKIH +FHVSQLKKAV D+HQ+ PNIAM+NDQMELVLEP
Sbjct: 484 GPYTVLGRVGEVTYLLGLPETAKIHPIFHVSQLKKAVGDKHQVYPNIAMINDQMELVLEP 543

Query: 121 ENVTQ 125
           ENVTQ
Sbjct: 544 ENVTQ 548

[Close]

BLAST of CsGy5G010768 vs. ExPASy TrEMBL
Match: A0A5D3DFB4 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00650 PE=4 SV=1)

HSP 1 Score: 199 bits (505), Expect = 5.30e-60
Identity = 97/125 (77.60%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYF 60
           MLA LK HLQHAQE+MKKFA+VHR +V+FDIGD V+LK+Q YRQQSV KK CEKLS RYF
Sbjct: 136 MLAALKRHLQHAQERMKKFANVHRRDVVFDIGDRVFLKLQHYRQQSVAKKRCEKLSPRYF 195

Query: 61  RPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEP 120
            PY +LGRVGEVAY+L LP+TAKIH VFHVSQLKKAV D+HQ+ P+IAM+NDQMELV+EP
Sbjct: 196 GPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAVGDKHQVYPDIAMINDQMELVMEP 255

Query: 121 ENVTQ 125
           ENVTQ
Sbjct: 256 ENVTQ 260

[Close]

BLAST of CsGy5G010768 vs. ExPASy TrEMBL
Match: A0A5D3DY05 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00930 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 2.23e-58
Identity = 91/125 (72.80%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYF 60
           ML +LK HLQHAQE+M+KFA++HR +V+FDIGD VYLK+QPYRQQSV KK CEKLS RYF
Sbjct: 178 MLKVLKRHLQHAQERMQKFANIHRRDVVFDIGDRVYLKLQPYRQQSVAKKRCEKLSPRYF 237

Query: 61  RPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEP 120
            PY +LGRVGEVAY+L LP+TAKIH VFHVSQLKKA+ D+H + P++ ++NDQMELVLEP
Sbjct: 238 GPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAIGDKHPVYPDVTLINDQMELVLEP 297

Query: 121 ENVTQ 125
           ENV Q
Sbjct: 298 ENVLQ 302

[Close]

BLAST of CsGy5G010768 vs. ExPASy TrEMBL
Match: A0A5A7SRH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold696G00020 PE=4 SV=1)

HSP 1 Score: 194 bits (492), Expect = 3.67e-58
Identity = 92/124 (74.19%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 2   LAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFR 61
           LA+LK HLQ AQEQMKKF DVHR  V+FDIGDWVYLK+QPYRQQSV K+ C+KL  +YF 
Sbjct: 83  LAVLKQHLQQAQEQMKKFFDVHRREVVFDIGDWVYLKLQPYRQQSVAKRRCDKLCPKYFG 142

Query: 62  PYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEPE 121
           PYM+LGRVGEVAY+L LP+ AKIH VFHVSQLK+AV D+H+IQP+I+ LNDQMELVL P+
Sbjct: 143 PYMVLGRVGEVAYLLDLPENAKIHPVFHVSQLKRAVGDKHRIQPDISALNDQMELVLVPD 202

Query: 122 NVTQ 125
            VTQ
Sbjct: 203 QVTQ 206

[Close]

BLAST of CsGy5G010768 vs. ExPASy TrEMBL
Match: A0A5A7UCK0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold734G00190 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 3.92e-57
Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 1   MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYF 60
           ML  LK HLQHAQE+MKKF D+HR +V+FDIGD VYLK+QPYRQQSVTKK CEKL  RYF
Sbjct: 343 MLKALKRHLQHAQERMKKFVDIHRRDVVFDIGDKVYLKLQPYRQQSVTKKRCEKLLPRYF 402

Query: 61  RPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAMLNDQMELVLEP 120
            PY +LGRVGEVAY+L L KTAKIH VFHVSQLKKAV D+H + P++ M+NDQMELVLEP
Sbjct: 403 GPYTVLGRVGEVAYLLDLSKTAKIHPVFHVSQLKKAVGDKHPVYPDVTMINDQMELVLEP 462

Query: 121 ENVTQ 125
           E VTQ
Sbjct: 463 EYVTQ 467

The following BLAST results are available for this feature:

BLAST of CsGy5G010768 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G010768 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052161.1	3.70e-62	80.80	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK05126.1 Retrotransp...	[more]
KAA0060331.1	1.10e-59	77.60	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK22080.1 Tran...	[more]
TYK28461.1	4.60e-58	72.80	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0031735.1	7.57e-58	74.19	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051271.1	8.09e-57	75.20	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK29989.1 ty3-gyp...	[more]

BLAST of CsGy5G010768 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3X8	1.79e-62	80.80	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3DFB4	5.30e-60	77.60	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DY05	2.23e-58	72.80	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SRH1	3.67e-58	74.19	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UCK0	3.92e-57	75.20	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CsGy5G010768 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 2..125
None	No IPR available	PANTHER	PTHR46148:SF38	PROTEIN NYNRIN-LIKE	coord: 2..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G010768.1	CsGy5G010768.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding