CsGy5G008470 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G008470
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Mitochondrial ribosomal protein L37
Location	Gy14Chr5: 6463909 .. 6464678 (-)
RNA-Seq Expression	CsGy5G008470
Synteny	CsGy5G008470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGTAAAGAAATTATTTATCTGCCACTTTCTATAGATTGGAGTAACTAGTAAGTTTAGTTTTATAATTTTTGGCCTTTCTTTGTCTCTGTTATACTTGGAGAAAGAGTTGTTCTGGCACATCAGCACATGTTTTCAAGAAGTTCAGACATCGCATTGCATTTTGTTTGTTTTTTTCTATTTGAAACCATATCTGGAAGTTTATGTGTTTTGTAAGATATACAATCCCTAAGGTACACATGGCCTTTGAGGTGTTACTGTTGTATCAAGCTGTTGGATTCTTATCATAGCTGATTCAAAGAAACACTGACTACCATAGTTGTTGAAGTAGTTCATCAGAACTAATGAATTTGTTCGTTTTTGTGTTGCAGAGAATAAAAATATGGGTTTGAACCAAGTTAGTCTGTTTAGAAGGAGCATTATTGTTAATAGCAAAGACCCAATACAACTGACATCTGTCCAAACGAGGCAAATCAAAGAAGGGGTCTAAAGGGGGAGCAGCTGTTGATGCTCCTGAAGCATCGATTCTAAGTAAAGAGGTGAGGTCTACTACTGTAGTTGGTGCCAATATTCTCAAAGAAGGCGCAGATCCAAAAGGTATGGCAGACTTAGAGTACTCTGTTTGGCTTGATAAACATCCACCTCTAAGCAAATTGCGAAGGAAGAATATCCAAACCCTTTCCTATGCAGATCTCAAACGCTTTGTTAAATTAGATACTCGAGCAAGAATAGGAAAACAACTCTATCAGGACCAAGAACTGATGTAA

mRNA sequence

ATGGCTGAGAATAAAAATATGGGTTTGAACCAAGTTAGTCTGTTTAGAAGGAGCATTATTGTTAATAGCAAAGACCCAATACAACTGACATCTGGGTCTAAAGGGGGAGCAGCTGTTGATGCTCCTGAAGCATCGATTCTAAGTAAAGAGGTGAGGTCTACTACTGTAGTTGGTGCCAATATTCTCAAAGAAGGCGCAGATCCAAAAGGTATGGCAGACTTAGAGTACTCTGTTTGGCTTGATAAACATCCACCTCTAAGCAAATTGCGAAGGAAGAATATCCAAACCCTTTCCTATGCAGATCTCAAACGCTTTGTTAAATTAGATACTCGAGCAAGAATAGGAAAACAACTCTATCAGGACCAAGAACTGATGTAA

Coding sequence (CDS)

ATGGCTGAGAATAAAAATATGGGTTTGAACCAAGTTAGTCTGTTTAGAAGGAGCATTATTGTTAATAGCAAAGACCCAATACAACTGACATCTGGGTCTAAAGGGGGAGCAGCTGTTGATGCTCCTGAAGCATCGATTCTAAGTAAAGAGGTGAGGTCTACTACTGTAGTTGGTGCCAATATTCTCAAAGAAGGCGCAGATCCAAAAGGTATGGCAGACTTAGAGTACTCTGTTTGGCTTGATAAACATCCACCTCTAAGCAAATTGCGAAGGAAGAATATCCAAACCCTTTCCTATGCAGATCTCAAACGCTTTGTTAAATTAGATACTCGAGCAAGAATAGGAAAACAACTCTATCAGGACCAAGAACTGATGTAA

Protein sequence

MAENKNMGLNQVSLFRRSIIVNSKDPIQLTSGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVWLDKHPPLSKLRRKNIQTLSYADLKRFVKLDTRARIGKQLYQDQELM*

Homology

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BLAST of CsGy5G008470 vs. NCBI nr
Match: XP_016899597.1 (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo] >KAA0041217.1 39S ribosomal protein L54 [Cucumis melo var. makuwa] >TYK16020.1 39S ribosomal protein L54 [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 6.78e-48
Identity = 89/126 (70.63%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 5   KNMGLNQVSLFRRSIIVNSKDPIQLTS------------GSKGGAAVDAPEASILSKEVR 64
           K MGL+Q+  FRR+IIV+SKD IQLTS            GSKGGAA DAP+ASILSKEV+
Sbjct: 26  KKMGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVK 85

Query: 65  STTVVGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKL 114
           STTVVGANILKEGADPK MAD EY  WL    DKHPPLS+LRRKN ++L YADL+RFVKL
Sbjct: 86  STTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKL 145

[Close]

BLAST of CsGy5G008470 vs. NCBI nr
Match: XP_008442187.1 (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 159 bits (403), Expect = 1.18e-47
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 7   MGLNQVSLFRRSIIVNSKDPIQLTS------------GSKGGAAVDAPEASILSKEVRST 66
           MGL+Q+  FRR+IIV+SKD IQLTS            GSKGGAA DAP+ASILSKEV+ST
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60

Query: 67  TVVGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKLDT 114
           TVVGANILKEGADPK MAD EY  WL    DKHPPLS+LRRKN ++L YADL+RFVKLDT
Sbjct: 61  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 120

[Close]

BLAST of CsGy5G008470 vs. NCBI nr
Match: XP_038883606.1 (39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 156 bits (395), Expect = 2.51e-46
Identity = 89/126 (70.63%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 5   KNMGLNQVSLFRRSIIVNSKDPIQLTS------------GSKGGAAVDAPEASILSKEVR 64
           K M ++Q+ LFRRSI VNSKD IQLTS            GSKGGAA DAP+AS LSKEV+
Sbjct: 7   KKMVMSQIRLFRRSI-VNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVK 66

Query: 65  STTVVGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKL 114
           STTVVGANILKEGADPK MAD EY VWL    DKHPPLS+LRRKN++TL Y DLKRFVKL
Sbjct: 67  STTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKL 126

[Close]

BLAST of CsGy5G008470 vs. NCBI nr
Match: XP_038883607.1 (54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_038883608.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 155 bits (391), Expect = 7.93e-46
Identity = 88/124 (70.97%), Postives = 97/124 (78.23%), Query Frame = 0


Query: 7   MGLNQVSLFRRSIIVNSKDPIQLTS------------GSKGGAAVDAPEASILSKEVRST 66
           M ++Q+ LFRRSI VNSKD IQLTS            GSKGGAA DAP+AS LSKEV+ST
Sbjct: 1   MVMSQIRLFRRSI-VNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVKST 60

Query: 67  TVVGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKLDT 114
           TVVGANILKEGADPK MAD EY VWL    DKHPPLS+LRRKN++TL Y DLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKLDT 120

[Close]

BLAST of CsGy5G008470 vs. NCBI nr
Match: XP_004144674.3 (39S ribosomal protein L54, mitochondrial [Cucumis sativus])

HSP 1 Score: 153 bits (386), Expect = 4.30e-45
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 9   LNQVSLFRRSIIVNSKDPIQLTS------------GSKGGAAVDAPEASILSKEVRSTTV 68
           ++Q+ LFRR+IIV+SK+ IQLTS            GSKGGAA DAP+ASILSKEV+STTV
Sbjct: 1   MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 69  VGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKLDTRA 114
           VGANILKEGADPK MAD EY  WL    +KHPPLS+LRRKN ++L YADLKRF+KLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

[Close]

BLAST of CsGy5G008470 vs. ExPASy TrEMBL
Match: A0A5D3CXE8 (39S ribosomal protein L54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00130 PE=4 SV=1)

HSP 1 Score: 161 bits (407), Expect = 3.28e-48
Identity = 89/126 (70.63%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 5   KNMGLNQVSLFRRSIIVNSKDPIQLTS------------GSKGGAAVDAPEASILSKEVR 64
           K MGL+Q+  FRR+IIV+SKD IQLTS            GSKGGAA DAP+ASILSKEV+
Sbjct: 26  KKMGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVK 85

Query: 65  STTVVGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKL 114
           STTVVGANILKEGADPK MAD EY  WL    DKHPPLS+LRRKN ++L YADL+RFVKL
Sbjct: 86  STTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKL 145

[Close]

BLAST of CsGy5G008470 vs. ExPASy TrEMBL
Match: A0A1S4DUD4 (39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 161 bits (407), Expect = 3.28e-48
Identity = 89/126 (70.63%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 5   KNMGLNQVSLFRRSIIVNSKDPIQLTS------------GSKGGAAVDAPEASILSKEVR 64
           K MGL+Q+  FRR+IIV+SKD IQLTS            GSKGGAA DAP+ASILSKEV+
Sbjct: 26  KKMGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVK 85

Query: 65  STTVVGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKL 114
           STTVVGANILKEGADPK MAD EY  WL    DKHPPLS+LRRKN ++L YADL+RFVKL
Sbjct: 86  STTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKL 145

[Close]

BLAST of CsGy5G008470 vs. ExPASy TrEMBL
Match: A0A1S3B544 (54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 5.73e-48
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 7   MGLNQVSLFRRSIIVNSKDPIQLTS------------GSKGGAAVDAPEASILSKEVRST 66
           MGL+Q+  FRR+IIV+SKD IQLTS            GSKGGAA DAP+ASILSKEV+ST
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60

Query: 67  TVVGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKLDT 114
           TVVGANILKEGADPK MAD EY  WL    DKHPPLS+LRRKN ++L YADL+RFVKLDT
Sbjct: 61  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 120

[Close]

BLAST of CsGy5G008470 vs. ExPASy TrEMBL
Match: A0A0A0KYS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 1.47e-45
Identity = 85/122 (69.67%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 9   LNQVSLFRRSIIVNSKDPIQLTS------------GSKGGAAVDAPEASILSKEVRSTTV 68
           ++QV LFRR+IIV+SK+ IQLTS            GSKGGAA DAP+ASILSKEV+STTV
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 69  VGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKLDTRA 114
           VGANILKEGADPK MAD EY  WL    +KHPPLS+LRRKN ++L YADLKRF+KLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

[Close]

BLAST of CsGy5G008470 vs. ExPASy TrEMBL
Match: A0A6J1JQ61 (54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111486735 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 7.84e-41
Identity = 81/123 (65.85%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 7   MGLNQVSLFRRSIIVNSKDPIQLTS-----------GSKGGAAVDAPEASILSKEVRSTT 66
           M ++Q+ LFRRS++ N+KD I+LT+           GSKGGAA DAP+ASILSKEV+STT
Sbjct: 1   MAMSQIRLFRRSLL-NTKDLIKLTNVRTFAAGGKKKGSKGGAATDAPKASILSKEVKSTT 60

Query: 67  VVGANILKEGADPKGMADLEYSVWL----DKHPPLSKLRRKNIQTLSYADLKRFVKLDTR 114
           VVGANILKEGADPK MAD EY  WL    DK P LS+LRRK+ +TL Y DLKRFVKLDTR
Sbjct: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTR 120

[Close]

BLAST of CsGy5G008470 vs. TAIR 10
Match: AT3G01740.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-25
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 9   LNQVSLFRRSIIVNSKDPIQLT---------SGSKGGAAVDAPEASILSKEVRSTTVVGA 68
           +N++ L R S   +SKD ++ T          G KGG A DAP+ S L+KE++STTVVGA
Sbjct: 1   MNRIGLIRGS---SSKDVVRRTFAAAASKAKKGGKGGGASDAPKGSSLTKEIKSTTVVGA 60

Query: 69  NILKEGADPKGMADLEYSVW----LDKHPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 115
           N LK+G+DPK + D +Y  W    LDK P LS+LRRKN++TL Y DLKRFVKLDTR +I
Sbjct: 61  NTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTRGKI 116

[Close]

BLAST of CsGy5G008470 vs. TAIR 10
Match: AT5G14290.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-19
Identity = 50/85 (58.82%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 34  KGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYS--VW--LDKHPPLSKL 93
           +G    DAP+AS LSKE++S+ VV AN LK+G DPK + + ++   +W  LDK P LS+L
Sbjct: 38  RGDGGNDAPKASNLSKEIKSSMVVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSEL 97

Query: 94  RRKNIQTLSYADLKRFVKLDTRARI 115
           RRKN++TLS+ DLKRFVKLDTRARI
Sbjct: 98  RRKNVETLSFDDLKRFVKLDTRARI 122

The following BLAST results are available for this feature:

BLAST of CsGy5G008470 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G008470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899597.1	6.78e-48	70.63	PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo] >K...	[more]
XP_008442187.1	1.18e-47	70.97	PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]	[more]
XP_038883606.1	2.51e-46	70.63	39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]	[more]
XP_038883607.1	7.93e-46	70.97	54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_0388...	[more]
XP_004144674.3	4.30e-45	68.85	39S ribosomal protein L54, mitochondrial [Cucumis sativus]	[more]

BLAST of CsGy5G008470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXE8	3.28e-48	70.63	39S ribosomal protein L54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S4DUD4	3.28e-48	70.63	39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S3B544	5.73e-48	70.97	54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0KYS4	1.47e-45	69.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1	[more]
A0A6J1JQ61	7.84e-41	65.85	54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CsGy5G008470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01740.1	2.0e-25	52.94	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	1.2e-19	58.82	Mitochondrial ribosomal protein L37	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PANTHER	PTHR28595	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	coord: 28..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G008470.2	CsGy5G008470.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome