CsGy5G006295 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G006295
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr5: 4240798 .. 4241034 (-)
RNA-Seq ExpressionCsGy5G006295
SyntenyCsGy5G006295
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATGGGTCCCAATGGGAATATAATACGACGAGGCAGGATGGTCCAACGACCACAGCAGCGCGACAGCCGTACACGTGTACGGCTTGTGACAAACTAACAGATGATGAAAAGGAAACGGTAATGGTGTTATGGTAATTAAATTGAAGAATGAGGTGAAGTCGGAAGTGAATAGGATAAATTATTTAATGGAAGGAATGAAAGGAGAGGAAGCGGCCACGTCGTCAGATATAG

mRNA sequence

ATGATTGATGGGTCCCAATGGGAATATAATACGACGAGGCAGGATGGTCCAACGACCACAGCAGCGCGACAGCCGTACACGTGTACGGCTTGTGACAAACTAACAGATGATGAAAAGGAAACGGAGAGGAAGCGGCCACGTCGTCAGATATAG

Coding sequence (CDS)

ATGATTGATGGGTCCCAATGGGAATATAATACGACGAGGCAGGATGGTCCAACGACCACAGCAGCGCGACAGCCGTACACGTGTACGGCTTGTGACAAACTAACAGATGATGAAAAGGAAACGGAGAGGAAGCGGCCACGTCGTCAGATATAG

Protein sequence

MIDGSQWEYNTTRQDGPTTTAARQPYTCTACDKLTDDEKETERKRPRRQI*
Homology
[Close]
BLAST of CsGy5G006295 vs. NCBI nr
Match: KGN50476.1 (hypothetical protein Csa_000163 [Cucumis sativus])

HSP 1 Score: 107 bits (267), Expect = 2.69e-29
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MIDGSQWEYNTTRQDGPTTTAARQPYTCTACDKLTDDEKETERKRPRRQI 50
          MIDGSQWEYNTTRQDGPTTTAARQPYTCTACDKLTDDEKETERKRPRRQI
Sbjct: 1  MIDGSQWEYNTTRQDGPTTTAARQPYTCTACDKLTDDEKETERKRPRRQI 50

[Close]
BLAST of CsGy5G006295 vs. ExPASy TrEMBL
Match: A0A0A0KS02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175980 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 1.30e-29
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MIDGSQWEYNTTRQDGPTTTAARQPYTCTACDKLTDDEKETERKRPRRQI 50
          MIDGSQWEYNTTRQDGPTTTAARQPYTCTACDKLTDDEKETERKRPRRQI
Sbjct: 1  MIDGSQWEYNTTRQDGPTTTAARQPYTCTACDKLTDDEKETERKRPRRQI 50

The following BLAST results are available for this feature:
BLAST of CsGy5G006295 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy5G006295 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50476.12.69e-29100.00hypothetical protein Csa_000163 [Cucumis sativus][more]
BLAST of CsGy5G006295 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS021.30e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175980 PE=4 SV=1[more]
BLAST of CsGy5G006295 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G006295.1CsGy5G006295.1mRNA