CsGy5G001320 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G001320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	E3 ubiquitin-protein ligase MARCH2 isoform X2
Location	Gy14Chr5: 790867 .. 794318 (-)
RNA-Seq Expression	CsGy5G001320
Synteny	CsGy5G001320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAGAAAGTTATCGTTTGTCTTTTTTTATTAAAGAAAAGAAAAATCAAATTTTTAAAAAGGAATGATCTTTGTTGAGGGTGTCTTCGATGTGGAAGTGAGATTTGGCGCCTCAGTTGCTAAAGCAATATCCTTGTGTTTGTTGAAAGGCTACAAAATAACGTGGATTCATATACTCTTCTCATAAATTACGTAATTTCAAAACTCATTTTTTCTTTGCCTTTTCAATTCTCACCTAAAAGAAAAAGGATAAAGGGGGTTGAGAATTTCCCTATCCTTTTTTTCTTATTTCACCTCTGTTTCTACTGCTTCAACTGTTGAATCTTTAATCCTTCAAGTCTAAGTCTCCCAGGTACGAACCCTTTTGATTTTATTCGCTTTTGTTCCTGATTTTTGCTACTGTTGCTCTCCTAACCTCGTTTTCTATGTGTAATGCAACTCTTGTTTGGTTGGAAGCAATTTTGGTTTCATTTTGTTGATGGGTTTTGATTTCTTGAATTGGGTATTGTAGATTGAGGCTCGTTTGTGGTTTTGTAGTTCAATTGTTACATGTAATGCAATGTTCTCAATGTATTTTGGGTATTTTGTGTATTTTGTGTCTTAGTCGTTTGTTTGGGACTGAAAATAAATTTGTTAGGTGGAAATTATGCTTTCAATTGGTTGGTGGGTTTGTTTCGCTTTATTGGTGATGTGGGATGAACACTGAGTTGCAGATATTTTCTATTCAATTTAGGGTGTGAGAGAAAATTGAGCAAAGGGACGACTAGATGATGCTCAGAAATGTTAGTCAAAGACTTTTGTTGTTCTATTGATTCAAGTTTGTGGTGTTTGAAATTCAAATGAACCTTTCGATGGATTGCCATTCAAATGATGTAAAGGCCAAGGCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACCCTATTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGTGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGGTACATTTGAGTTGCTTCTGCTCCATTTAAAATGCATTTTCAATTGTTTTGTTCATTTGTGCTGCTACATTTTGGCAGAACCTTTTTTAGTTAGTTCCTCCTTCCTCATACTTTTGTTACTTGCGTTGTTTGTTCATTGTTTGTCATCCAAAAAACATTAGATAAACTCCTAAGTTTGCTTTTTGAAAATTGATACTTTATGTGGTTTGTTAAACCACCACTAAATTGATAAGGTTAAACCATGAATCAAATATGCGATCTATTTATGTAGATTTGGGGGTGGAAATGACTTTGTTGGTGAGGAGAGTTTGACTGAATTCTAAAAGCTTAAGTAGATGGAAGATATTTAATTTGTCTGTCACAGTAAGATTAGAGCCGCAAAAATGAGTATACTTCAATGGTTAAGGCATTTCCCTTGAGGTCGGAGGTTCAAGTCTTTGCCACACATTTGTTGCACTAAAGACTAAAGAGAAAAGATTAAATCCCTATTTTTTTTTACATTGTAGATGACACTTTTTCAAATATTGTTGTCTTTCCACAATTACTATTGGCTTCAATTATCTGGTTAATGTGTTGGAAAATGTAAAGGAAGTCGAGGCCATTAAGCCTGAGTACTATTATTCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACCAAAGGATCAAACAGATGTGAGATATGCCAGTAAGTTGCTTTTTTAGAGAATGCCATTTATTAAATTAAACCAATCATATGGTGTGTCAAGGGCATTTTGAAACGCAATTTGCTAAACTTTTCAGGGTTGTAGCGGCAAATGTATCACCTCCACAGTCACATCATGGTGTAGGTACTCTGTAGCTCTTGATGCAATGATTATAAACTTATAAAATGAAACGTCTCAATGAATATGGAATCAATTTTTTCGTCCTTTCTACAGTATTAGCGTTATTAGTTGATGACCAGTATCATGCTTTAGTTTTGCTTTTGCTAATTGCTACAGTTCCTTGCTTTCTTTTCCTACATTAGGAAGAAAGTTATCATGACATTTGATCTGTAATCTTTGCTTCTGAGTGTTTCTTTTATTTTGAAGGGCTTTACAAAGTAGCATAGTGAATATTTCTAAATAATGTTTTGCTTACCAGATTTGCAATGAAACTCAATAAGAATTATAGGCAAGGACAACTACGACCTTACTTATTCCGTAGGTTGTACAACCGTTTCCTTTTAAGTTCTAATACTTATAGGCAATGACTGCTGCTTCATCCTTCACAATTCTTCCTCTTCTTGGTGAATCAGAAATGTTGAGAAAGAGGAAAAGTGCAAAGTGGCAAAGATTCACTCGCCCACTAAACCACATCGAACAAAATCGAACTCATAAACTAAATAAATGGACATGAAAATTATTATGCTTCTGTTTTCTGTATATAGTCTTTACCTTTCAAACTATTGATTCATGAGAAATGCAGTTTAGAACCTTACAATTTAACATTGAACTTATGATTCATGGATGTCATATCGAAATAACCTGAACTATGATTATTCCCTTATTTGACATGCACAGACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGGTAGCAAGATTTGATTTTGATTTTTCCAGTGATATGCTTGTTTCATTTGTTGTTAAAAAACATGAAACATTTTTCATAATTATTTATGCAACAGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGTACGTTTTTGTCGATCGATACCGATCTATACTTCTGTTTCCTTGTCGAGATATTTATGGTTAGTGAAACTTCGAAGAACAGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCATCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTCTTCGAATGTTTGCTTAAAAAAGAAGAAAAAGGAAACGTTATATAAATAAAGTGAAAATATATCTTATTCTTGTTTTTTTTCTCTACGTGTATTGGCCTCTTGATCAAACATATTAGTTTAACTTGTTGTGTAAATTTGACAATAAATCAGTAAATATGTTTACTTCAATTGCAAGTGGTAAGCAATAAAATTTTATGTTTTGACGAC

mRNA sequence

GAAGAAGAAAGTTATCGTTTGTCTTTTTTTATTAAAGAAAAGAAAAATCAAATTTTTAAAAAGGAATGATCTTTGTTGAGGGTGTCTTCGATGTGGAAGTGAGATTTGGCGCCTCAGTTGCTAAAGCAATATCCTTGTGTTTGTTGAAAGGCTACAAAATAACGTGGATTCATATACTCTTCTCATAAATTACGTAATTTCAAAACTCATTTTTTCTTTGCCTTTTCAATTCTCACCTAAAAGAAAAAGGATAAAGGGGGTTGAGAATTTCCCTATCCTTTTTTTCTTATTTCACCTCTGTTTCTACTGCTTCAACTGTTGAATCTTTAATCCTTCAAGTCTAAGTCTCCCAGGGTGTGAGAGAAAATTGAGCAAAGGGACGACTAGATGATGCTCAGAAATGTTAGTCAAAGACTTTTGTTGTTCTATTGATTCAAGTTTGTGGTGTTTGAAATTCAAATGAACCTTTCGATGGATTGCCATTCAAATGATGTAAAGGCCAAGGCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACCCTATTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGTGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACCAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCACCTCCACAGTCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCATCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTCTTCGAATGTTTGCTTAAAAAAGAAGAAAAAGGAAACGTTATATAAATAAAGTGAAAATATATCTTATTCTTGTTTTTTTTCTCTACGTGTATTGGCCTCTTGATCAAACATATTAGTTTAACTTGTTGTGTAAATTTGACAATAAATCAGTAAATATGTTTACTTCAATTGCAAGTGGTAAGCAATAAAATTTTATGTTTTGACGAC

Coding sequence (CDS)

ATGAACCTTTCGATGGATTGCCATTCAAATGATGTAAAGGCCAAGGCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACCCTATTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGTGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACCAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCACCTCCACAGTCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCATCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG

Protein sequence

MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSSRGSQRVESNVTIGYFPAI*

Homology

[Close]

BLAST of CsGy5G001320 vs. NCBI nr
Match: XP_004145881.1 (E3 ubiquitin-protein ligase MARCH2 [Cucumis sativus] >XP_031742128.1 E3 ubiquitin-protein ligase MARCH2 [Cucumis sativus] >KGN49961.1 hypothetical protein Csa_000267 [Cucumis sativus])

HSP 1 Score: 521 bits (1342), Expect = 2.12e-186
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60
           MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE
Sbjct: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60

Query: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120
           SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC
Sbjct: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120

Query: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180
           RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ
Sbjct: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180

Query: 181 RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240
           RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE
Sbjct: 181 RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240

Query: 241 WNSSRGSQRVESNVTIGYFPAI 262
           WNSSRGSQRVESNVTIGYFPAI
Sbjct: 241 WNSSRGSQRVESNVTIGYFPAI 262

[Close]

BLAST of CsGy5G001320 vs. NCBI nr
Match: XP_008437468.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Cucumis melo])

HSP 1 Score: 484 bits (1246), Expect = 8.81e-172
Identity = 248/262 (94.66%), Postives = 249/262 (95.04%), Query Frame = 0


Query: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60
           M LSMDCHSNDVKA AG NQSNEGDLEKQRVAQPSSS LELSTRDGDDNT LTIVVSTGE
Sbjct: 1   MKLSMDCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGE 60

Query: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120
           SKPTSEVPGPGTL SQEE  LACAVSPKKE  ST S SDEQCRICQQEKEEVLIELGCHC
Sbjct: 61  SKPTSEVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHC 120

Query: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180
           RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ
Sbjct: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180

Query: 181 RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240
           RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE
Sbjct: 181 RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240

Query: 241 WNSSRGSQRVESNVTIGYFPAI 262
           WNS+R SQRVESNVTIGYFPAI
Sbjct: 241 WNSARVSQRVESNVTIGYFPAI 261

[Close]

BLAST of CsGy5G001320 vs. NCBI nr
Match: KAA0042631.1 (E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo var. makuwa] >TYK06032.1 E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 480 bits (1235), Expect = 4.34e-170
Identity = 248/263 (94.30%), Postives = 249/263 (94.68%), Query Frame = 0


Query: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60
           M LSMDCHSNDVKA AG NQSNEGDLEKQRVAQPSSS LELSTRDGDDNT LTIVVSTGE
Sbjct: 1   MKLSMDCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGE 60

Query: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120
           SKPTSEVPGPGTL SQEE  LACAVSPKKE  ST S SDEQCRICQQEKEEVLIELGCHC
Sbjct: 61  SKPTSEVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHC 120

Query: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180
           RGGLAKAHRTCIDTWFRT GSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ
Sbjct: 121 RGGLAKAHRTCIDTWFRTIGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180

Query: 181 R-YCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ 240
           R YCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ
Sbjct: 181 RQYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ 240

Query: 241 EWNSSRGSQRVESNVTIGYFPAI 262
           EWNS+RGSQRVESNVTIGYFPAI
Sbjct: 241 EWNSARGSQRVESNVTIGYFPAI 262

[Close]

BLAST of CsGy5G001320 vs. NCBI nr
Match: XP_008437466.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo] >XP_016903259.1 PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo])

HSP 1 Score: 479 bits (1234), Expect = 6.16e-170
Identity = 248/263 (94.30%), Postives = 249/263 (94.68%), Query Frame = 0


Query: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60
           M LSMDCHSNDVKA AG NQSNEGDLEKQRVAQPSSS LELSTRDGDDNT LTIVVSTGE
Sbjct: 1   MKLSMDCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGE 60

Query: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120
           SKPTSEVPGPGTL SQEE  LACAVSPKKE  ST S SDEQCRICQQEKEEVLIELGCHC
Sbjct: 61  SKPTSEVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHC 120

Query: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180
           RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ
Sbjct: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180

Query: 181 R-YCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ 240
           R YCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ
Sbjct: 181 RQYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ 240

Query: 241 EWNSSRGSQRVESNVTIGYFPAI 262
           EWNS+R SQRVESNVTIGYFPAI
Sbjct: 241 EWNSARVSQRVESNVTIGYFPAI 262

[Close]

BLAST of CsGy5G001320 vs. NCBI nr
Match: XP_038875309.1 (E3 ubiquitin-protein ligase MARCHF2 isoform X4 [Benincasa hispida])

HSP 1 Score: 473 bits (1218), Expect = 1.46e-167
Identity = 240/257 (93.39%), Postives = 246/257 (95.72%), Query Frame = 0


Query: 6   DCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKPTS 65
           DCHSNDVKA  G NQ+N+GDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKP S
Sbjct: 3   DCHSNDVKANTGANQNNDGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKPIS 62

Query: 66  EVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHCRGGLA 125
           EVPG GTL SQE  +L C VSPKKELLSTTS SDEQCRICQQEKEEVLIELGC+CRGGLA
Sbjct: 63  EVPGVGTLCSQEG-LLPCEVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCNCRGGLA 122

Query: 126 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRYCFS 185
           KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQR+CFS
Sbjct: 123 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRHCFS 182

Query: 186 PLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSSR 245
           PLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS+R
Sbjct: 183 PLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTR 242

Query: 246 GSQRVESNVTIGYFPAI 262
           GSQRVESNVTIGYFPAI
Sbjct: 243 GSQRVESNVTIGYFPAI 258

[Close]

BLAST of CsGy5G001320 vs. ExPASy TrEMBL
Match: A0A0A0KQJ1 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G146840 PE=4 SV=1)

HSP 1 Score: 521 bits (1342), Expect = 1.03e-186
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60
           MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE
Sbjct: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60

Query: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120
           SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC
Sbjct: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120

Query: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180
           RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ
Sbjct: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180

Query: 181 RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240
           RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE
Sbjct: 181 RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240

Query: 241 WNSSRGSQRVESNVTIGYFPAI 262
           WNSSRGSQRVESNVTIGYFPAI
Sbjct: 241 WNSSRGSQRVESNVTIGYFPAI 262

[Close]

BLAST of CsGy5G001320 vs. ExPASy TrEMBL
Match: A0A1S3AU35 (E3 ubiquitin-protein ligase MARCH2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1)

HSP 1 Score: 484 bits (1246), Expect = 4.26e-172
Identity = 248/262 (94.66%), Postives = 249/262 (95.04%), Query Frame = 0


Query: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60
           M LSMDCHSNDVKA AG NQSNEGDLEKQRVAQPSSS LELSTRDGDDNT LTIVVSTGE
Sbjct: 1   MKLSMDCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGE 60

Query: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120
           SKPTSEVPGPGTL SQEE  LACAVSPKKE  ST S SDEQCRICQQEKEEVLIELGCHC
Sbjct: 61  SKPTSEVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHC 120

Query: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180
           RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ
Sbjct: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180

Query: 181 RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240
           RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE
Sbjct: 181 RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240

Query: 241 WNSSRGSQRVESNVTIGYFPAI 262
           WNS+R SQRVESNVTIGYFPAI
Sbjct: 241 WNSARVSQRVESNVTIGYFPAI 261

[Close]

BLAST of CsGy5G001320 vs. ExPASy TrEMBL
Match: A0A5A7TM25 (E3 ubiquitin-protein ligase MARCH2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001330 PE=4 SV=1)

HSP 1 Score: 480 bits (1235), Expect = 2.10e-170
Identity = 248/263 (94.30%), Postives = 249/263 (94.68%), Query Frame = 0


Query: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60
           M LSMDCHSNDVKA AG NQSNEGDLEKQRVAQPSSS LELSTRDGDDNT LTIVVSTGE
Sbjct: 1   MKLSMDCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGE 60

Query: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120
           SKPTSEVPGPGTL SQEE  LACAVSPKKE  ST S SDEQCRICQQEKEEVLIELGCHC
Sbjct: 61  SKPTSEVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHC 120

Query: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180
           RGGLAKAHRTCIDTWFRT GSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ
Sbjct: 121 RGGLAKAHRTCIDTWFRTIGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180

Query: 181 R-YCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ 240
           R YCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ
Sbjct: 181 RQYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ 240

Query: 241 EWNSSRGSQRVESNVTIGYFPAI 262
           EWNS+RGSQRVESNVTIGYFPAI
Sbjct: 241 EWNSARGSQRVESNVTIGYFPAI 262

[Close]

BLAST of CsGy5G001320 vs. ExPASy TrEMBL
Match: A0A1S3AU77 (E3 ubiquitin-protein ligase MARCH2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1)

HSP 1 Score: 479 bits (1234), Expect = 2.98e-170
Identity = 248/263 (94.30%), Postives = 249/263 (94.68%), Query Frame = 0


Query: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60
           M LSMDCHSNDVKA AG NQSNEGDLEKQRVAQPSSS LELSTRDGDDNT LTIVVSTGE
Sbjct: 1   MKLSMDCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGE 60

Query: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120
           SKPTSEVPGPGTL SQEE  LACAVSPKKE  ST S SDEQCRICQQEKEEVLIELGCHC
Sbjct: 61  SKPTSEVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHC 120

Query: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180
           RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ
Sbjct: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180

Query: 181 R-YCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ 240
           R YCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ
Sbjct: 181 RQYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQ 240

Query: 241 EWNSSRGSQRVESNVTIGYFPAI 262
           EWNS+R SQRVESNVTIGYFPAI
Sbjct: 241 EWNSARVSQRVESNVTIGYFPAI 262

[Close]

BLAST of CsGy5G001320 vs. ExPASy TrEMBL
Match: A0A1S4E4V2 (E3 ubiquitin-protein ligase MARCH9 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1)

HSP 1 Score: 429 bits (1102), Expect = 1.95e-150
Identity = 229/262 (87.40%), Postives = 231/262 (88.17%), Query Frame = 0


Query: 1   MNLSMDCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGE 60
           M LSMDCHSNDVKA AG NQSNEGDLEKQRVAQPSSS LELSTRDGDDNT LTIVVSTGE
Sbjct: 1   MKLSMDCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGE 60

Query: 61  SKPTSEVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHC 120
           SKPTSEVPGPGTL SQEE  LACAVSPKKE  ST S SDEQCRICQQEKEEVLIELGCHC
Sbjct: 61  SKPTSEVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHC 120

Query: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQ 180
           RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG                  
Sbjct: 121 RGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG------------------ 180

Query: 181 RYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240
           +YCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE
Sbjct: 181 QYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQE 240

Query: 241 WNSSRGSQRVESNVTIGYFPAI 262
           WNS+R SQRVESNVTIGYFPAI
Sbjct: 241 WNSARVSQRVESNVTIGYFPAI 243

[Close]

BLAST of CsGy5G001320 vs. TAIR 10
Match: AT2G45530.1 (RING/U-box superfamily protein )

HSP 1 Score: 266.2 bits (679), Expect = 2.9e-71
Identity = 144/251 (57.37%), Postives = 176/251 (70.12%), Query Frame = 0


Query: 19  NQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKPTSEVPGPGTLRSQEE 78
           + S   DLEKQ+  Q    + +  +   +++  LTIVV  G+S             S+EE
Sbjct: 5   SSSGGDDLEKQQQQQQKDKSPQKQSESANESNHLTIVVCNGDS-------------SREE 64

Query: 79  VILACAVSPKKEL-LSTTSGSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFR 138
             L   + P+KE+ LS    S EQCR+C Q+KEEVLIELGC CRGGLAKAHR+CID WFR
Sbjct: 65  --LVGQIPPEKEVSLSRNGSSHEQCRVCLQDKEEVLIELGCQCRGGLAKAHRSCIDAWFR 124

Query: 139 TKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRYCFSPLWLAFAILIGG 198
           TKGSN+CEICQVVA NV+PP++   TNYW+WRIDP+YR ++ +R CFSPLW+AF+ILIGG
Sbjct: 125 TKGSNQCEICQVVAVNVTPPETQPTTNYWVWRIDPSYRQEERERGCFSPLWVAFSILIGG 184

Query: 199 LLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWN----SSRGSQRVESN 258
           L+LD+LISITLGVSALPVNIIIGVIVVLGLGT  RL LEF  EW+      R  QR E+N
Sbjct: 185 LMLDVLISITLGVSALPVNIIIGVIVVLGLGTALRLTLEFCYEWSLRRAVHRAVQRAEAN 240

Query: 259 --VTIGYFPAI 263
               I Y PA+
Sbjct: 245 NFSNIAYPPAL 240

[Close]

BLAST of CsGy5G001320 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-11
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 95  TSGSDEQCRICQQEKEEV---LIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVA 154
           T+  ++ CRIC    E      IELGC C+  LA AHR C +TWF+ KG   CEICQ VA
Sbjct: 77  TAPPEKDCRICHLGVETSGGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVA 136

[Close]

BLAST of CsGy5G001320 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-11
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 96  SGSDEQCRICQQE------KEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQV 155
           S S+  CRIC         +  V IELGC C+  LA AH+ C +TWF+ KG+  CE+C  
Sbjct: 73  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 132

[Close]

BLAST of CsGy5G001320 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 99  DEQCRICQQEKEE-----VLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAAN 158
           DE+    ++E+EE     + ++LGC C+G L  AH  C +TWF+ KG+  CEIC  +A N
Sbjct: 110 DEEDEEEEEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALN 169

Query: 159 VSPPQSH 161
           V+  QS+
Sbjct: 170 VAGEQSN 176

[Close]

BLAST of CsGy5G001320 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-08
Identity = 29/72 (40.28%), Postives = 37/72 (51.39%), Query Frame = 0


Query: 93  STTSGS-----DEQCRICQQEKEEVLIE------LGCHCRGGLAKAHRTCIDTWFRTKGS 152
           S  SGS     ++ CRIC    E    E      LGC C+  L   H+ C DTWF+ KG+
Sbjct: 64  SVASGSIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGN 123

Query: 153 NRCEICQVVAAN 154
             CEIC+ +A N
Sbjct: 124 KTCEICRSIAQN 135

The following BLAST results are available for this feature:

BLAST of CsGy5G001320 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G001320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145881.1	2.12e-186	100.00	E3 ubiquitin-protein ligase MARCH2 [Cucumis sativus] >XP_031742128.1 E3 ubiquiti...	[more]
XP_008437468.1	8.81e-172	94.66	PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Cucumis melo]	[more]
KAA0042631.1	4.34e-170	94.30	E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo var. makuwa] >TYK060...	[more]
XP_008437466.1	6.16e-170	94.30	PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo] >XP_0169...	[more]
XP_038875309.1	1.46e-167	93.39	E3 ubiquitin-protein ligase MARCHF2 isoform X4 [Benincasa hispida]	[more]

BLAST of CsGy5G001320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQJ1	1.03e-186	100.00	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G14684...	[more]
A0A1S3AU35	4.26e-172	94.66	E3 ubiquitin-protein ligase MARCH2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5A7TM25	2.10e-170	94.30	E3 ubiquitin-protein ligase MARCH2 isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3AU77	2.98e-170	94.30	E3 ubiquitin-protein ligase MARCH2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A1S4E4V2	1.95e-150	87.40	E3 ubiquitin-protein ligase MARCH9 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of CsGy5G001320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45530.1	2.9e-71	57.37	RING/U-box superfamily protein	[more]
AT2G37950.1	1.2e-11	50.79	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	7.5e-11	44.62	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	1.4e-09	41.79	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	1.2e-08	40.28	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 101..148 e-value: 3.9E-15 score: 66.3
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 102..147 e-value: 8.2E-11 score: 41.9
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 94..154 score: 19.313353
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 87..156 e-value: 1.7E-14 score: 55.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..44
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 22..261
None	No IPR available	PANTHER	PTHR46214:SF16	E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1	coord: 22..261
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 102..148 e-value: 1.5341E-13 score: 61.5744
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 98..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G001320.2	CsGy5G001320.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding