CsGy4G025455 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G025455
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-H2 finger protein ATL80
Location	Gy14Chr4: 30816753 .. 30817310 (+)
RNA-Seq Expression	CsGy4G025455
Synteny	CsGy4G025455

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG

mRNA sequence

ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG

Coding sequence (CDS)

ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG

Protein sequence

MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP*

Homology

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BLAST of CsGy4G025455 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.8e-55
Identity = 116/192 (60.42%), Postives = 143/192 (74.48%), Query Frame = 0


Query: 4   FRYLAGVNS-SATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHL-AGDGG 63
           FR L   N+ S   D      +SD V+ILAALLCALICVLGL+AV+RC WLR L AG+  
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRT 65

Query: 64  GAGS-TRPPPPP--ASNKGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIR 123
            +GS T+ P PP  A+NKGLKKK+L+SLPK TF+ E   S +F++CAICLAEF+ GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 124 VLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK--- 183
           VLPQCGHGFH++CIDTW  SHSSCPSCRQILVV++C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 184 EEGDDKTNRFLP 186
           ++G+D  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

[Close]

BLAST of CsGy4G025455 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 4.9e-54
Identity = 104/180 (57.78%), Postives = 133/180 (73.89%), Query Frame = 0


Query: 4   FRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGA 63
           FR L   NS++ ++   P ++SD V+ILA LLCAL C++GL+AV+RCAWLR +A     +
Sbjct: 6   FRLLQEANSTSPAEA-SPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIA-SRNRS 65

Query: 64  GSTRPPPPPASNKGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIRVLPQC 123
             T PPP  A+NKGLKKK+LRSLPK T++ +   + +  +CAICL EFA GDE+RVLPQC
Sbjct: 66  DQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQC 125

Query: 124 GHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTN 182
           GHGFH+SCIDTW  SHSSCPSCRQILVV++C KCGG P SSSS    ++R+K+  D   N
Sbjct: 126 GHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]

BLAST of CsGy4G025455 vs. ExPASy Swiss-Prot
Match: Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.3e-37
Identity = 81/168 (48.21%), Postives = 107/168 (63.69%), Query Frame = 0


Query: 24  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKIL 83
           ++D V+IL+ALLCAL+CV GL AVARCAWLR L G    A    PPP    NKGLKKK L
Sbjct: 23  ETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP----NKGLKKKAL 82

Query: 84  RSLPKYTFTAEFSA----------------QFSDCAICLAEFAVGDEIRVLPQCGHGFHM 143
           ++LPK T+TA  S                   ++CAIC+ EF+ G+EIR+LP C H FH+
Sbjct: 83  QALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHV 142

Query: 144 SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEE 176
           +CID W  S SSCPSCR+ILV  +C +CG   +++      E++VK++
Sbjct: 143 ACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTA------ETQVKDQ 180

[Close]

BLAST of CsGy4G025455 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-35
Identity = 81/170 (47.65%), Postives = 99/170 (58.24%), Query Frame = 0


Query: 24  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKIL 83
           +SD V+IL+ALLCALICV GL AV RCAWLR     G           P+ NKGLKKK L
Sbjct: 25  ESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGGDS---------PSPNKGLKKKAL 84

Query: 84  RSLPKYTFTAEFS--------AQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFR 143
           +SLP+ TFTA  S           ++CAICL +FA G+EIRVLP CGH FH+ CID W  
Sbjct: 85  QSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV 144

Query: 144 SHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP 186
           S SSCPSCR+IL   +C +CG    +   +     +  +        FLP
Sbjct: 145 SRSSCPSCRRILTPVRCDRCGHASTAEMKDQAHRHQHHQHSSTTIPTFLP 185

[Close]

BLAST of CsGy4G025455 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-25
Identity = 64/132 (48.48%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 18  TFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKG 77
           T +  +D++ VIILAALLCALI  LGL ++ RCA        G G  S+      A   G
Sbjct: 25  TRDMNFDANMVIILAALLCALILALGLNSILRCA-----MRCGFGLSSSAAAGTVADRAG 84

Query: 78  LKKKILRSLPKYTF-TAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRS 137
           LKK+ L+  P   + + E     ++CAICL EFA G+ +RVLP C H FHMSCIDTW  S
Sbjct: 85  LKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVS 144

Query: 138 HSSCPSCRQILV 149
           HSSCP+CR  L+
Sbjct: 145 HSSCPNCRHSLI 151

[Close]

BLAST of CsGy4G025455 vs. NCBI nr
Match: XP_004145558.1 (RING-H2 finger protein ATL8 [Cucumis sativus] >KGN55526.1 hypothetical protein Csa_012171 [Cucumis sativus])

HSP 1 Score: 377 bits (969), Expect = 4.25e-132
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
           GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 185
           NRFLP
Sbjct: 181 NRFLP 185

[Close]

BLAST of CsGy4G025455 vs. NCBI nr
Match: XP_008453009.1 (PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo] >KAA0064659.1 RING-H2 finger protein ATL80 [Cucumis melo var. makuwa] >TYK19932.1 RING-H2 finger protein ATL80 [Cucumis melo var. makuwa])

HSP 1 Score: 374 bits (959), Expect = 1.42e-130
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
            GAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  AGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 185
           NRFLP
Sbjct: 181 NRFLP 185

[Close]

BLAST of CsGy4G025455 vs. NCBI nr
Match: KAG6608649.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037966.1 RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348 bits (893), Expect = 1.71e-120
Identity = 172/186 (92.47%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLA  NSS+ SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120
           GGGA STRPPPPPASNKGLKKKILRSLPKYTFTAEF+AQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180
           QCGHGFH+SCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVK+EG+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 181 TNRFLP 185
            NRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of CsGy4G025455 vs. NCBI nr
Match: XP_038898612.1 (RING-H2 finger protein ATL8 [Benincasa hispida])

HSP 1 Score: 348 bits (893), Expect = 2.19e-120
Identity = 175/182 (96.15%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLAGVNSSA SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLAGVNSSAISDTPEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120
           GGGA STR PPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAASTRSPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180
           QCGHGFHMSCID WFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK
Sbjct: 121 QCGHGFHMSCIDMWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

[Close]

BLAST of CsGy4G025455 vs. NCBI nr
Match: XP_022941514.1 (RING-H2 finger protein ATL80-like [Cucurbita moschata])

HSP 1 Score: 348 bits (892), Expect = 2.43e-120
Identity = 172/186 (92.47%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MR FRYLA  NSS+ SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRSFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120
           GGGA STRPPPPPASNKGLKKKILRSLPKYTFTAEF+AQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180
           QCGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK+EG+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 181 TNRFLP 185
            NRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of CsGy4G025455 vs. ExPASy TrEMBL
Match: A0A0A0L5Y2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G664340 PE=4 SV=1)

HSP 1 Score: 377 bits (969), Expect = 2.06e-132
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
           GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 185
           NRFLP
Sbjct: 181 NRFLP 185

[Close]

BLAST of CsGy4G025455 vs. ExPASy TrEMBL
Match: A0A5A7VGL3 (RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00440 PE=4 SV=1)

HSP 1 Score: 374 bits (959), Expect = 6.89e-131
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
            GAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  AGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 185
           NRFLP
Sbjct: 181 NRFLP 185

[Close]

BLAST of CsGy4G025455 vs. ExPASy TrEMBL
Match: A0A1S3BWC1 (RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103493842 PE=4 SV=1)

HSP 1 Score: 374 bits (959), Expect = 6.89e-131
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  GGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
            GAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  AGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 185
           NRFLP
Sbjct: 181 NRFLP 185

[Close]

BLAST of CsGy4G025455 vs. ExPASy TrEMBL
Match: A0A6J1FNK0 (RING-H2 finger protein ATL80-like OS=Cucurbita moschata OX=3662 GN=LOC111446793 PE=4 SV=1)

HSP 1 Score: 348 bits (892), Expect = 1.17e-120
Identity = 172/186 (92.47%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MR FRYLA  NSS+ SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRSFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120
           GGGA STRPPPPPASNKGLKKKILRSLPKYTFTAEF+AQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180
           QCGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK+EG+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 181 TNRFLP 185
            NRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of CsGy4G025455 vs. ExPASy TrEMBL
Match: A0A6J1FA06 (RING-H2 finger protein ATL80-like OS=Cucurbita moschata OX=3662 GN=LOC111443637 PE=4 SV=1)

HSP 1 Score: 345 bits (885), Expect = 1.37e-119
Identity = 172/186 (92.47%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MRPFRYLAGVNSSATSDTFEPR-YDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLAGVNSSA SD+ EP+ YDSDFVIILAALLCALICVLGLVAVARCAWLRHLAG+
Sbjct: 1   MRPFRYLAGVNSSAISDSAEPQTYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGN 60

Query: 61  GGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120
             G  STRPPPPPASNKGLKKKILRSLPKY FTAEFSAQFSDCAICLAEFAVGDEIRVLP
Sbjct: 61  VSGGASTRPPPPPASNKGLKKKILRSLPKYNFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180
           QCGHGFH+SCID WFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK
Sbjct: 121 QCGHGFHVSCIDMWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 181 TNRFLP 185
           T+RFLP
Sbjct: 181 TSRFLP 186

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BLAST of CsGy4G025455 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 215.3 bits (547), Expect = 4.1e-56
Identity = 116/192 (60.42%), Postives = 143/192 (74.48%), Query Frame = 0


Query: 4   FRYLAGVNS-SATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHL-AGDGG 63
           FR L   N+ S   D      +SD V+ILAALLCALICVLGL+AV+RC WLR L AG+  
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRT 65

Query: 64  GAGS-TRPPPPP--ASNKGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIR 123
            +GS T+ P PP  A+NKGLKKK+L+SLPK TF+ E   S +F++CAICLAEF+ GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 124 VLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK--- 183
           VLPQCGHGFH++CIDTW  SHSSCPSCRQILVV++C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 184 EEGDDKTNRFLP 186
           ++G+D  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

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BLAST of CsGy4G025455 vs. TAIR 10
Match: AT1G76410.1 (RING/U-box superfamily protein )

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-55
Identity = 104/180 (57.78%), Postives = 133/180 (73.89%), Query Frame = 0


Query: 4   FRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGA 63
           FR L   NS++ ++   P ++SD V+ILA LLCAL C++GL+AV+RCAWLR +A     +
Sbjct: 6   FRLLQEANSTSPAEA-SPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIA-SRNRS 65

Query: 64  GSTRPPPPPASNKGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIRVLPQC 123
             T PPP  A+NKGLKKK+LRSLPK T++ +   + +  +CAICL EFA GDE+RVLPQC
Sbjct: 66  DQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQC 125

Query: 124 GHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTN 182
           GHGFH+SCIDTW  SHSSCPSCRQILVV++C KCGG P SSSS    ++R+K+  D   N
Sbjct: 126 GHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]

BLAST of CsGy4G025455 vs. TAIR 10
Match: AT4G35480.1 (RING-H2 finger A3B )

HSP 1 Score: 154.8 bits (390), Expect = 6.6e-38
Identity = 81/168 (48.21%), Postives = 107/168 (63.69%), Query Frame = 0


Query: 24  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKIL 83
           ++D V+IL+ALLCAL+CV GL AVARCAWLR L G    A    PPP    NKGLKKK L
Sbjct: 23  ETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP----NKGLKKKAL 82

Query: 84  RSLPKYTFTAEFSA----------------QFSDCAICLAEFAVGDEIRVLPQCGHGFHM 143
           ++LPK T+TA  S                   ++CAIC+ EF+ G+EIR+LP C H FH+
Sbjct: 83  QALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHV 142

Query: 144 SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEE 176
           +CID W  S SSCPSCR+ILV  +C +CG   +++      E++VK++
Sbjct: 143 ACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTA------ETQVKDQ 180

[Close]

BLAST of CsGy4G025455 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 151.0 bits (380), Expect = 9.5e-37
Identity = 81/170 (47.65%), Postives = 99/170 (58.24%), Query Frame = 0


Query: 24  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKIL 83
           +SD V+IL+ALLCALICV GL AV RCAWLR     G           P+ NKGLKKK L
Sbjct: 25  ESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGGDS---------PSPNKGLKKKAL 84

Query: 84  RSLPKYTFTAEFS--------AQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFR 143
           +SLP+ TFTA  S           ++CAICL +FA G+EIRVLP CGH FH+ CID W  
Sbjct: 85  QSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV 144

Query: 144 SHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP 186
           S SSCPSCR+IL   +C +CG    +   +     +  +        FLP
Sbjct: 145 SRSSCPSCRRILTPVRCDRCGHASTAEMKDQAHRHQHHQHSSTTIPTFLP 185

[Close]

BLAST of CsGy4G025455 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-26
Identity = 64/132 (48.48%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 18  TFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKG 77
           T +  +D++ VIILAALLCALI  LGL ++ RCA        G G  S+      A   G
Sbjct: 25  TRDMNFDANMVIILAALLCALILALGLNSILRCA-----MRCGFGLSSSAAAGTVADRAG 84

Query: 78  LKKKILRSLPKYTF-TAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRS 137
           LKK+ L+  P   + + E     ++CAICL EFA G+ +RVLP C H FHMSCIDTW  S
Sbjct: 85  LKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVS 144

Query: 138 HSSCPSCRQILV 149
           HSSCP+CR  L+
Sbjct: 145 HSSCPNCRHSLI 151

The following BLAST results are available for this feature:

BLAST of CsGy4G025455 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM69	5.8e-55	60.42	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
Q8LC69	4.9e-54	57.78	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]
Q9ZT49	9.3e-37	48.21	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
O22755	1.3e-35	47.65	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9LZV8	2.1e-25	48.48	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]

BLAST of CsGy4G025455 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145558.1	4.25e-132	100.00	RING-H2 finger protein ATL8 [Cucumis sativus] >KGN55526.1 hypothetical protein C...	[more]
XP_008453009.1	1.42e-130	98.92	PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo] >KAA0064659.1 RING-H2 fin...	[more]
KAG6608649.1	1.71e-120	92.47	RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_038898612.1	2.19e-120	96.15	RING-H2 finger protein ATL8 [Benincasa hispida]	[more]
XP_022941514.1	2.43e-120	92.47	RING-H2 finger protein ATL80-like [Cucurbita moschata]	[more]

BLAST of CsGy4G025455 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Y2	2.06e-132	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G664340 P...	[more]
A0A5A7VGL3	6.89e-131	98.92	RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BWC1	6.89e-131	98.92	RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103493842 PE=4 SV=1	[more]
A0A6J1FNK0	1.17e-120	92.47	RING-H2 finger protein ATL80-like OS=Cucurbita moschata OX=3662 GN=LOC111446793 ...	[more]
A0A6J1FA06	1.37e-119	92.47	RING-H2 finger protein ATL80-like OS=Cucurbita moschata OX=3662 GN=LOC111443637 ...	[more]

BLAST of CsGy4G025455 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20823.1	4.1e-56	60.42	RING/U-box superfamily protein	[more]
AT1G76410.1	3.5e-55	57.78	RING/U-box superfamily protein	[more]
AT4G35480.1	6.6e-38	48.21	RING-H2 finger A3B	[more]
AT2G17450.1	9.5e-37	47.65	RING-H2 finger A3A	[more]
AT5G01880.1	1.5e-26	48.48	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 102..143 e-value: 1.8E-7 score: 40.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..144 e-value: 3.7E-14 score: 52.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 102..144 score: 12.592549
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 71..148 e-value: 5.3E-22 score: 79.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..185
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 2..178
None	No IPR available	PANTHER	PTHR45798:SF59	RING-H2 FINGER PROTEIN ATL8	coord: 2..178
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 101..144 e-value: 2.79576E-17 score: 69.6381
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 83..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G025455.1	CsGy4G025455.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane