CsGy4G024800 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G024800
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description60S ribosomal protein L39
LocationGy14Chr4: 30426935 .. 30428757 (+)
RNA-Seq ExpressionCsGy4G024800
SyntenyCsGy4G024800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCGATTACCCTTCTCAAGGGAGGGTATAAAGGTTCTTCGCTCCTGATAGGGTTTTTGTTTATCTCGCCGTCGATCGCCGGAACCCGAAGATGGTACGTATCGTTATTCGACTCTGAACTTTTTCTCTACGTAAATCTGGTGCTATTCGTTCTTCTCTAATTGATGATTGTTGAACTTCTGCGAGTTTGTAATTCGATTTTTCTCTTCTATTCCAATACACAGCCGTCTCACAAGACTTTTAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTAAGAACCGACAACACGATCAGGTATTAAGCCTAAATGATATTTGAATCTGCATATTTTTATTTGAATCTCTCCCTCTCGTATTCATTTTGACGTTGTAATTTGTTCGATCGTGTTATAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTCCTAACTTCAATGTTCATTTAGCTTGATTTTGTTAAGTTTCAGAACTTGAACTTTCTTAAGGATCTACATTTGTATTTCCGCAACTGAAATTTAGTTTATCGGAAACTTTTGTTTAATCATCGTTACACTCAAGATTGAAGTGCTTTGGAATAGAGTGAATTTTCCATCAACTTTTATGTCTTTAGAGTAGCATTTTTGGCGAACCTTTACGGCATTTACTTCTTCATTTCTACGACATTTATCAAAGTTGGTGATTCTTGACAAAATTCCATTTAAATTTACATATCACAATTCTCATCTTTTTAGGAATAGATATAATCATATTTTGATTTAGCTTTATATATATTTAATCAGTGAAATCTGTTCATAAAAGTGTGTAGCCAAAGTATACTTGAACATTCACAATTAACCTTCACATACATTGGAAGATTATCAAGAAATTCCAATTAGCTTCTCCTAGAACTTAGAAAAGACTTTAAATATACATTCATATGATAATCATCCTATACACCTACAACCTTTGCTACTTCTGAAAGAAAGACTTTATGAGATACCCTTCTATAGAGTACTCATATTTCTATATATTCTCTAGGTTCTATATTTCTATCATTGAATTCTTAGTACTTTCATCTGTAGTTGATCTAAACAGACTAGTCTTTACGTAACGCCAAAAAACAAGGTTCTACATGTGTGTCCGTGAGTTCTGAGTACTTCCATCTATAGTTGATCTAAACAGACCAGTCTTCATTACAAAAGTGGGTAGAGGTATAGAACTTGGTGGTGGTGAGATACCAAAGGTAGAGGTTCCGGCGTAGAAAATTCGCTCTTTTGTATTACAGAGTGAACTTGTCACTTGAAACTTAACCACCTTGGCCTTGTTTAGGCTTTGTTTTTGTTTGTTTGGAGGTCTGCAAGGTATGGCGTTCTTAGAACCATCTTGAGGACAACGAAGAACGTGGATAGATGAATCCTTTGAGTTAATTTCCATGGTGTGGAGTGTAAAGCAAATAATGAATGCTTCAATAGAAAGGAAGAGAATAATTTGTTTCATTAAAGAAGAATTAGTCTCTTGGCTTTATAGGGGGATATGAGAATTGGATTTGGATTGTTGAAGGCGGTTTTATTTAAAATATAAATTATAAGTTATTTATAGATAAATGGATTTGGTATTTCTAATAGGAAAAAGAAATTTATATTTGGAATTTTTAATAGGAAAATATGTATGTGTAATAGGTTTTTTAATGATTTGATTTGCTATAAAAATTTATTTCGTATTTTAAACCGCATGCATTGTGAAAATTAATAGGTTTAATTAATCGCTAAATTTTGAAGTT

mRNA sequence

TATCGATTACCCTTCTCAAGGGAGGGTATAAAGGTTCTTCGCTCCTGATAGGGTTTTTGTTTATCTCGCCGTCGATCGCCGGAACCCGAAGATGGTACGTATCGTTATTCGACTCTGAACTTTTTCTCTACGTAAATCTGGTGCTATTCGTTCTTCTCTAATTGATGATTGTTGAACTTCTGCGAGTTTGTAATTCGATTTTTCTCTTCTATTCCAATACACAGCCGTCTCACAAGACTTTTAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTAAGAACCGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTCCTAACTTCAATGTTCATTTAGCTTGATTTTGTTAAGTTTCAGAACTTGAACTTTCTTAAGGATCTACATTTGTATTTCCGCAACTGAAATTTAGTTTATCGGAAACTTTTGTTTAATCATCGTTACACTCAAGATTGAAGTGCTTTGGAATAGAGTGAATTTTCCATCAACTTTTATGTCTTTAGAGTAGCATTTTTGGCGAACCTTTACGGCATTTACTTCTTCATTTCTACGACATTTATCAAAGTTGGTGATTCTTGACAAAATTCCATTTAAATTTACATATCACAATTCTCATCTTTTTAGGAATAGATATAATCATATTTTGATTTAGCTTTATATATATTTAATCAGTGAAATCTGTTCATAAAAGTGTGTAGCCAAAGTATACTTGAACATTCACAATTAACCTTCACATACATTGGAAGATTATCAAGAAATTCCAATTAGCTTCTCCTAGAACTTAGAAAAGACTTTAAATATACATTCATATGATAATCATCCTATACACCTACAACCTTTGCTACTTCTGAAAGAAAGACTTTATGAGATACCCTTCTATAGAGTACTCATATTTCTATATATTCTCTAGGTTCTATATTTCTATCATTGAATTCTTAGTACTTTCATCTGTAGTTGATCTAAACAGACTAGTCTTTACGTAACGCCAAAAAACAAGGTTCTACATGTGTGTCCGTGAGTTCTGAGTACTTCCATCTATAGTTGATCTAAACAGACCAGTCTTCATTACAAAAGTGGGTAGAGGTATAGAACTTGGTGGTGGTGAGATACCAAAGGTAGAGGTTCCGGCGTAGAAAATTCGCTCTTTTGTATTACAGAGTGAACTTGTCACTTGAAACTTAACCACCTTGGCCTTGTTTAGGCTTTGTTTTTGTTTGTTTGGAGGTCTGCAAGGTATGGCGTTCTTAGAACCATCTTGAGGACAACGAAGAACGTGGATAGATGAATCCTTTGAGTTAATTTCCATGGTGTGGAGTGTAAAGCAAATAATGAATGCTTCAATAGAAAGGAAGAGAATAATTTGTTTCATTAAAGAAGAATTAGTCTCTTGGCTTTATAGGGGGATATGAGAATTGGATTTGGATTGTTGAAGGCGGTTTTATTTAAAATATAAATTATAAGTTATTTATAGATAAATGGATTTGGTATTTCTAATAGGAAAAAGAAATTTATATTTGGAATTTTTAATAGGAAAATATGTATGTGTAATAGGTTTTTTAATGATTTGATTTGCTATAAAAATTTATTTCGTATTTTAAACCGCATGCATTGTGAAAATTAATAGGTTTAATTAATCGCTAAATTTTGAAGTT

Coding sequence (CDS)

ATGATTGTTGAACTTCTGCGAGTTTGTAATTCGATTTTTCTCTTCTATTCCAATACACAGCCGTCTCACAAGACTTTTAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTAAGAACCGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGA

Protein sequence

MIVELLRVCNSIFLFYSNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF*
Homology
[Close]
BLAST of CsGy4G024800 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 21 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
          PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CsGy4G024800 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 21 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
          PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CsGy4G024800 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 21 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
          PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CsGy4G024800 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-22
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 21 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
          PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CsGy4G024800 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-21
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 21 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
          PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CsGy4G024800 vs. NCBI nr
Match: EXB38641.1 (60S ribosomal protein L39 [Morus notabilis])

HSP 1 Score: 112 bits (279), Expect = 1.02e-30
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 18 NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 70
          N+QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  NSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54

[Close]
BLAST of CsGy4G024800 vs. NCBI nr
Match: KAB1204673.1 (60S ribosomal protein L39-1 [Morella rubra])

HSP 1 Score: 111 bits (278), Expect = 1.56e-30
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 14 LFYSNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 70
          + Y N QPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MVYPNLQPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 57

[Close]
BLAST of CsGy4G024800 vs. NCBI nr
Match: KAA0050937.1 (60S ribosomal protein L39 [Cucumis melo var. makuwa] >KAG7022407.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma] >TYK10284.1 60S ribosomal protein L39 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 1.16e-29
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 20 QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 70
          QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 3  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 53

[Close]
BLAST of CsGy4G024800 vs. NCBI nr
Match: XP_022962571.1 (uncharacterized protein LOC111462968 [Cucurbita moschata])

HSP 1 Score: 110 bits (276), Expect = 2.48e-29
Identity = 56/77 (72.73%), Postives = 61/77 (79.22%), Query Frame = 0 

Query: 1   MIVELLRVCNSIFLFYS-------NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT 60
           ++   +RV  S FLF +       +  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT
Sbjct: 54  LVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT 113

Query: 61  IRYNAKRRHWRRTKLGF 70
           IRYNAKRRHWRRTKLGF
Sbjct: 114 IRYNAKRRHWRRTKLGF 130

[Close]
BLAST of CsGy4G024800 vs. NCBI nr
Match: KAG7029487.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110 bits (275), Expect = 2.56e-29
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 6   LRVCNSIFLFYS-------NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNA 65
           +RV  S FLF +       +  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNA
Sbjct: 48  IRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNA 107

Query: 66  KRRHWRRTKLGF 70
           KRRHWRRTKLGF
Sbjct: 108 KRRHWRRTKLGF 119

[Close]
BLAST of CsGy4G024800 vs. ExPASy TrEMBL
Match: W9R5P2 (60S ribosomal protein L39 OS=Morus notabilis OX=981085 GN=L484_014456 PE=3 SV=1)

HSP 1 Score: 112 bits (279), Expect = 4.93e-31
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 18 NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 70
          N+QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  NSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54

[Close]
BLAST of CsGy4G024800 vs. ExPASy TrEMBL
Match: A0A6A1UWI8 (60S ribosomal protein L39-1 OS=Morella rubra OX=262757 GN=CJ030_MR8G012745 PE=3 SV=1)

HSP 1 Score: 111 bits (278), Expect = 7.55e-31
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 14 LFYSNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 70
          + Y N QPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MVYPNLQPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 57

[Close]
BLAST of CsGy4G024800 vs. ExPASy TrEMBL
Match: A0A5A7U961 (60S ribosomal protein L39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004350 PE=3 SV=1)

HSP 1 Score: 109 bits (272), Expect = 5.63e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 20 QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 70
          QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 3  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 53

[Close]
BLAST of CsGy4G024800 vs. ExPASy TrEMBL
Match: A0A6J1HDM7 (uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC111462968 PE=3 SV=1)

HSP 1 Score: 110 bits (276), Expect = 1.20e-29
Identity = 56/77 (72.73%), Postives = 61/77 (79.22%), Query Frame = 0 

Query: 1   MIVELLRVCNSIFLFYS-------NTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT 60
           ++   +RV  S FLF +       +  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT
Sbjct: 54  LVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNT 113

Query: 61  IRYNAKRRHWRRTKLGF 70
           IRYNAKRRHWRRTKLGF
Sbjct: 114 IRYNAKRRHWRRTKLGF 130

[Close]
BLAST of CsGy4G024800 vs. ExPASy TrEMBL
Match: A0A2I0K803 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014891 PE=3 SV=1)

HSP 1 Score: 108 bits (271), Expect = 2.00e-29
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 17 SNTQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 70
          S  QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 34 SFVQPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87

[Close]
BLAST of CsGy4G024800 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 21 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
          PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CsGy4G024800 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 97.8 bits (242), Expect = 3.7e-21
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 21 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
          PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CsGy4G024800 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-19
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 28 IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71
          IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:
BLAST of CsGy4G024800 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6KAJ83.2e-2296.0060S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P... [more]
P514263.2e-2296.0060S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P... [more]
P514253.2e-2296.0060S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1[more]
Q5SMI49.4e-2294.0060S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P... [more]
P514241.6e-2194.0060S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2[more]
BLAST of CsGy4G024800 vs. NCBI nr
Match NameE-valueIdentityDescription
EXB38641.11.02e-3098.1160S ribosomal protein L39 [Morus notabilis][more]
KAB1204673.11.56e-3091.2360S ribosomal protein L39-1 [Morella rubra][more]
KAA0050937.11.16e-29100.0060S ribosomal protein L39 [Cucumis melo var. makuwa] >KAG7022407.1 60S ribosomal... [more]
XP_022962571.12.48e-2972.73uncharacterized protein LOC111462968 [Cucurbita moschata][more]
KAG7029487.12.56e-2977.7860S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CsGy4G024800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
W9R5P24.93e-3198.1160S ribosomal protein L39 OS=Morus notabilis OX=981085 GN=L484_014456 PE=3 SV=1[more]
A0A6A1UWI87.55e-3191.2360S ribosomal protein L39-1 OS=Morella rubra OX=262757 GN=CJ030_MR8G012745 PE=3 ... [more]
A0A5A7U9615.63e-30100.0060S ribosomal protein L39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1HDM71.20e-2972.73uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC1114629... [more]
A0A2I0K8032.00e-2994.44Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014891 PE=3 SV=1[more]
BLAST of CsGy4G024800 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31985.11.1e-2294.00Ribosomal protein L39 family protein [more]
AT3G02190.13.7e-2190.00Ribosomal protein L39 family protein [more]
AT2G25210.13.4e-1997.67Ribosomal protein L39 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 28..68
e-value: 4.8E-22
score: 77.3
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 21..70
e-value: 2.5E-28
score: 99.8
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 22..69
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 11..70
NoneNo IPR availablePANTHERPTHR19970:SF29SUBFAMILY NOT NAMEDcoord: 11..70
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 49..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G024800.2CsGy4G024800.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome