CsGy4G024055 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G024055
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transmembrane protein
Location	Gy14Chr4: 29896677 .. 29897088 (-)
RNA-Seq Expression	CsGy4G024055
Synteny	CsGy4G024055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTGGGGTCGGCGCTATGTCAAGGAGGAGCCGGTTTTCTTCCTATGACCGGTGGCTGGCAGTAGGCCTCGGCCTTCTCGCGGTGGTTTCACCGCTCTATATCGATCGGAGACCGAGCATCGAGGAGTTGGAAGAGGAGGAATCATCCATTCATCTTGGCTTCTGGTTGCCTGCTCTTCTCATGATCTTGATCTTCATTATTGCTGGAGTTCTTCACTTGGAACAGAGATGTGCCAGATTTGACCCTTATTGGATCCACAGAGTTGGTGGTTCTTCTTGTGGCATATTCATCATTCTTCTGCTTCTTGCATTTGTTTTAAAGTGTAAAGCTTCTTTAATGTTTTGGGAGTCTTAGAACTTGTCCCAACTTTCAAAGTTTTTTGTGTTTGTTTCCTTGAATGCTCTTA

mRNA sequence

ATGGAGGTTGGGGTCGGCGCTATGTCAAGGAGGAGCCGGTTTTCTTCCTATGACCGGTGGCTGGCAGTAGGCCTCGGCCTTCTCGCGGTGGTTTCACCGCTCTATATCGATCGGAGACCGAGCATCGAGGAGTTGGAAGAGGAGGAATCATCCATTCATCTTGGCTTCTGGTTGCCTGCTCTTCTCATGATCTTGATCTTCATTATTGCTGGAGTTCTTCACTTGGAACAGAGATGTGCCAGATTTGACCCTTATTGGATCCACAGAGTTGGTGGTTCTTCTTGTGGCATATTCATCATTCTTCTGCTTCTTGCATTTGTTTTAAAGTGTAAAGCTTCTTTAATGTTTTGGGAGTCTTAGAACTTGTCCCAACTTTCAAAGTTTTTTGTGTTTGTTTCCTTGAATGCTCTTA

Coding sequence (CDS)

ATGGAGGTTGGGGTCGGCGCTATGTCAAGGAGGAGCCGGTTTTCTTCCTATGACCGGTGGCTGGCAGTAGGCCTCGGCCTTCTCGCGGTGGTTTCACCGCTCTATATCGATCGGAGACCGAGCATCGAGGAGTTGGAAGAGGAGGAATCATCCATTCATCTTGGCTTCTGGTTGCCTGCTCTTCTCATGATCTTGATCTTCATTATTGCTGGAGTTCTTCACTTGGAACAGAGATGTGCCAGATTTGACCCTTATTGGATCCACAGAGTTGGTGGTTCTTCTTGTGGCATATTCATCATTCTTCTGCTTCTTGCATTTGTTTTAAAGTGTAAAGCTTCTTTAATGTTTTGGGAGTCTTAG

Protein sequence

MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPALLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES*

Homology

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BLAST of CsGy4G024055 vs. NCBI nr
Match: XP_011654202.1 (uncharacterized protein LOC105435317 [Cucumis sativus] >KGN55379.1 hypothetical protein Csa_012273 [Cucumis sativus])

HSP 1 Score: 239 bits (611), Expect = 1.17e-79
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119
           LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

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BLAST of CsGy4G024055 vs. NCBI nr
Match: XP_008452787.1 (PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo] >KAA0064538.1 uncharacterized protein E6C27_scaffold255G002580 [Cucumis melo var. makuwa] >TYK20052.1 uncharacterized protein E5676_scaffold134G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (607), Expect = 4.78e-79
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119
           LL+ILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

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BLAST of CsGy4G024055 vs. NCBI nr
Match: XP_038899620.1 (uncharacterized protein LOC120086878 [Benincasa hispida])

HSP 1 Score: 228 bits (581), Expect = 4.42e-75
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLGLLAVVSPLYIDRRPSIEELEEEESSI+LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGLLAVVSPLYIDRRPSIEELEEEESSINLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of CsGy4G024055 vs. NCBI nr
Match: XP_022977145.1 (uncharacterized protein LOC111477299 [Cucurbita maxima])

HSP 1 Score: 215 bits (547), Expect = 6.78e-70
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of CsGy4G024055 vs. NCBI nr
Match: XP_022936874.1 (uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 uncharacterized protein LOC111796500 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213 bits (543), Expect = 2.76e-69
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of CsGy4G024055 vs. ExPASy TrEMBL
Match: A0A0A0L2W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1)

HSP 1 Score: 239 bits (611), Expect = 5.68e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119
           LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of CsGy4G024055 vs. ExPASy TrEMBL
Match: A0A5D3D907 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001720 PE=4 SV=1)

HSP 1 Score: 238 bits (607), Expect = 2.31e-79
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119
           LL+ILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of CsGy4G024055 vs. ExPASy TrEMBL
Match: A0A1S3BUL9 (uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=4 SV=1)

HSP 1 Score: 238 bits (607), Expect = 2.31e-79
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119
           LL+ILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of CsGy4G024055 vs. ExPASy TrEMBL
Match: A0A6J1ILG7 (uncharacterized protein LOC111477299 OS=Cucurbita maxima OX=3661 GN=LOC111477299 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 3.28e-70
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of CsGy4G024055 vs. ExPASy TrEMBL
Match: A0A6J1F9J0 (uncharacterized protein LOC111443331 OS=Cucurbita moschata OX=3662 GN=LOC111443331 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 1.34e-69
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           MEVG+GA SRRSRFSSYDRW+AVGLG+LAVVSPLYIDRRPS +  EEEESS++LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWE 118
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of CsGy4G024055 vs. TAIR 10
Match: AT5G21910.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-20
Identity = 56/113 (49.56%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60
           ME G  +     RF++  + LA+ L +LAV+SPLYIDR  S E+LEEEE      F    
Sbjct: 1   METG-SSSPMMGRFTTSRKLLAISLSVLAVLSPLYIDRL-SEEDLEEEEELFSFMFSFSL 60

Query: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKAS 114
           LL++LI  IA  L+ +    RFDPYWIHR+ GS  G+ +IL+LL FVL CKAS
Sbjct: 61  LLLLLILAIALSLYSDPSLTRFDPYWIHRLCGSFGGLLVILILLVFVLICKAS 111

The following BLAST results are available for this feature:

BLAST of CsGy4G024055 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G024055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654202.1	1.17e-79	100.00	uncharacterized protein LOC105435317 [Cucumis sativus] >KGN55379.1 hypothetical ...	[more]
XP_008452787.1	4.78e-79	99.16	PREDICTED: uncharacterized protein LOC103493702 [Cucumis melo] >KAA0064538.1 unc...	[more]
XP_038899620.1	4.42e-75	94.96	uncharacterized protein LOC120086878 [Benincasa hispida]	[more]
XP_022977145.1	6.78e-70	88.14	uncharacterized protein LOC111477299 [Cucurbita maxima]	[more]
XP_022936874.1	2.76e-69	87.29	uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 unchar...	[more]

BLAST of CsGy4G024055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2W6	5.68e-80	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1	[more]
A0A5D3D907	2.31e-79	99.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BUL9	2.31e-79	99.16	uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=...	[more]
A0A6J1ILG7	3.28e-70	88.14	uncharacterized protein LOC111477299 OS=Cucurbita maxima OX=3661 GN=LOC111477299...	[more]
A0A6J1F9J0	1.34e-69	87.29	uncharacterized protein LOC111443331 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]

BLAST of CsGy4G024055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21910.1	1.4e-20	49.56	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758:SF2	TRANSMEMBRANE PROTEIN	coord: 9..114
None	No IPR available	PANTHER	PTHR35758	TRANSMEMBRANE PROTEIN	coord: 9..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G024055.1	CsGy4G024055.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane