CsGy4G022960 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G022960
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LOB domain-containing protein
Location	Gy14Chr4: 29208429 .. 29210027 (-)
RNA-Seq Expression	CsGy4G022960
Synteny	CsGy4G022960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCGCTCTTCCCTTCACTCTTCTTCTCCGTTTTCTTCTCTCTCATTCTTTTTTTTTCTATTTTTCTTATTACCCATTAACATTCCTCTCCTCCTCATTCCTTCTATCTTAAGAAACCTTTTCTTCTTCCTTCTTCCAACCACATAAATTAACACCCACCTCTCAAATATTATTACCAATTTCAACCATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGCTGCAGCGAAGCTTGCGTTTTAAGGTCTAGTCTTCATTGGATTGATTCTCCCGAAGCTCAAGGCAACGCTACTCTGTTTCTTGCTAAGTTTTTTGGCCGTAGTGATCTTTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGGTAAATTTAGTCCTAATTTATTAACTACCTTTTTTCTTTTATTTCACTATCCATTCATTCTGAGATTTTCTCTCTTCCTTTTTCTTTTTCTTTTTCTTTTCTTTTTTTCAAGCTTTGTTTCAGTCTCTGTTATTCGAAGCCTGTGGTCGCACAGTTAACCCAGTTAGCGGCGCCGTTGGTCTATTGTCTACTGGGAACTGGCACGTCTGTCAGGCGGCGGCGGATACTATTCTCAACGGCGGGGTTCTCCGACCAATACCCGGAATCGAAATTTCTGCCAATCCCACGCCTAACCTTGATGATTCATCGCTTACTTTTAATACCGATGTCTGGACAACCACCACGGTACACAATCTTCAATTTTACCCATCTACTCCGTCTGATTTCCGGTGCCTTCCTGATCTCAGTCTCGGCAGAGCGAAGAATCATCATCCGTTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACTAGCTTCGGAAGCGGCGATCTTGGCGACCAACGGAAAGAAACGAAGCTTTTGAACTTATTCGTGTGAAAAAGAGAGAGAGAGAGAGAAGGATGGAATTTTGTTTTTGAGTTTAGTGGCGATGTTGTAGAAGAAGTAAGAACAGTGAATAATCCAATGAGATTTTAATAATCAGTTGGTCGGAAACGAACCGTCGTAATGAAATTTTCTTCCACCGGCAATGGTGATTTATCCCTCGGTTCTAAAAAGAAAAAAAAAAAAAAACCAAAATTTGGGGGAGAGGTTTATAGGGTAATTTGAATAATAATAATGGAAGGATGAGATGTAATCGTGGAGAGGAGAGATTTGTTTGTTGCAATTTGCATGGATAATCGAAATTCAACATTGTCCTCGCCGTACCGTACAGCCTCTTCTCAATCACTCTTCTCTCACCCTTTCTTTTTCTTTTCTATTTTCTTTTCCCACACACACATATATATTTATTTAAAAACAAGACTATGCCTAAATAAATAAACAACACCACCGCCCTTCGCCTCTTTCCTTCGCTCTAAACCGACATCTAACCGATTATTATAGTGGGTAATAATGCCTTGTGAAATTTTACATCTCCAATTCTTTTTATCTAATGTTGCACAAACTTACCATCCAAACAAAATAGAAACTGTTCTATAAATATTTGAAACTCTGTTTTATATATTAAAATGGGGAATTTGACGTAGTTGGGAAATATGAAATATGAGGCATTATTAGG

mRNA sequence

CTCCGCTCTTCCCTTCACTCTTCTTCTCCGTTTTCTTCTCTCTCATTCTTTTTTTTTCTATTTTTCTTATTACCCATTAACATTCCTCTCCTCCTCATTCCTTCTATCTTAAGAAACCTTTTCTTCTTCCTTCTTCCAACCACATAAATTAACACCCACCTCTCAAATATTATTACCAATTTCAACCATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGCTGCAGCGAAGCTTGCGTTTTAAGGTCTAGTCTTCATTGGATTGATTCTCCCGAAGCTCAAGGCAACGCTACTCTGTTTCTTGCTAAGTTTTTTGGCCGTAGTGATCTTTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTTTGTTTCAGTCTCTGTTATTCGAAGCCTGTGGTCGCACAGTTAACCCAGTTAGCGGCGCCGTTGGTCTATTGTCTACTGGGAACTGGCACGTCTGTCAGGCGGCGGCGGATACTATTCTCAACGGCGGGGTTCTCCGACCAATACCCGGAATCGAAATTTCTGCCAATCCCACGCCTAACCTTGATGATTCATCGCTTACTTTTAATACCGATGTCTGGACAACCACCACGGTACACAATCTTCAATTTTACCCATCTACTCCGTCTGATTTCCGGTGCCTTCCTGATCTCAGTCTCGGCAGAGCGAAGAATCATCATCCGTTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACTAGCTTCGGAAGCGGCGATCTTGGCGACCAACGGAAAGAAACGAAGCTTTTGAACTTATTCGTGTGAAAAAGAGAGAGAGAGAGAGAAGGATGGAATTTTGTTTTTGAGTTTAGTGGCGATGTTGTAGAAGAAGTAAGAACAGTGAATAATCCAATGAGATTTTAATAATCAGTTGGTCGGAAACGAACCGTCGTAATGAAATTTTCTTCCACCGGCAATGGTGATTTATCCCTCGGTTCTAAAAAGAAAAAAAAAAAAAAACCAAAATTTGGGGGAGAGGTTTATAGGGTAATTTGAATAATAATAATGGAAGGATGAGATGTAATCGTGGAGAGGAGAGATTTGTTTGTTGCAATTTGCATGGATAATCGAAATTCAACATTGTCCTCGCCGTACCGTACAGCCTCTTCTCAATCACTCTTCTCTCACCCTTTCTTTTTCTTTTCTATTTTCTTTTCCCACACACACATATATATTTATTTAAAAACAAGACTATGCCTAAATAAATAAACAACACCACCGCCCTTCGCCTCTTTCCTTCGCTCTAAACCGACATCTAACCGATTATTATAGTGGGTAATAATGCCTTGTGAAATTTTACATCTCCAATTCTTTTTATCTAATGTTGCACAAACTTACCATCCAAACAAAATAGAAACTGTTCTATAAATATTTGAAACTCTGTTTTATATATTAAAATGGGGAATTTGACGTAGTTGGGAAATATGAAATATGAGGCATTATTAGG

Coding sequence (CDS)

ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGCTGCAGCGAAGCTTGCGTTTTAAGGTCTAGTCTTCATTGGATTGATTCTCCCGAAGCTCAAGGCAACGCTACTCTGTTTCTTGCTAAGTTTTTTGGCCGTAGTGATCTTTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTTTGTTTCAGTCTCTGTTATTCGAAGCCTGTGGTCGCACAGTTAACCCAGTTAGCGGCGCCGTTGGTCTATTGTCTACTGGGAACTGGCACGTCTGTCAGGCGGCGGCGGATACTATTCTCAACGGCGGGGTTCTCCGACCAATACCCGGAATCGAAATTTCTGCCAATCCCACGCCTAACCTTGATGATTCATCGCTTACTTTTAATACCGATGTCTGGACAACCACCACGGTACACAATCTTCAATTTTACCCATCTACTCCGTCTGATTTCCGGTGCCTTCCTGATCTCAGTCTCGGCAGAGCGAAGAATCATCATCCGTTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACTAGCTTCGGAAGCGGCGATCTTGGCGACCAACGGAAAGAAACGAAGCTTTTGAACTTATTCGTGTGA

Protein sequence

MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPTPNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV*

Homology

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BLAST of CsGy4G022960 vs. ExPASy Swiss-Prot
Match: Q9SZE8 (LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.0e-49
Identity = 118/240 (49.17%), Postives = 145/240 (60.42%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE C+LR  L WI+S E+QG+AT+F+AKFFGR+ L+SFIS+VP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPV+GAVG+L T NWHVCQAA +T+L GG LRPI  +  S +  
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLM 120

Query: 121 PNLDDSSLTFNTDVWTTTTVH--------NLQFYPSTPSDFRCLPDLSLGRAKNHH---- 180
            + D+SS  ++ DV    T H          +   S  +  R   D  L    NH     
Sbjct: 121 ISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLT 180

Query: 181 ----PLE-------------NRRSLDSEESVMTS-FGSGDLGDQRK-----ETKLLNLFV 206
               P+              +R    SEESV TS + +G  GD ++     E KLLNLFV
Sbjct: 181 APAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240

[Close]

BLAST of CsGy4G022960 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-47
Identity = 118/249 (47.39%), Postives = 146/249 (58.63%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI+SPEAQG+AT+F+AKFFGR+ L+SFISAVP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIP----GIEIS 120
           PALFQSLL+EACGRTVNPV+GAVGLL TGNW+VCQAA +T+L GG L+PIP    G   +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 121 ANPTPNLDDSS--------LTFNTDVWTTTTVHNLQF----------------------- 180
             P+P  D++S        L    D       H+ +F                       
Sbjct: 121 GFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQ 180

Query: 181 YPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEESVMT-SFGSGDLGDQ---------R 205
            PS+  D   +P   +   K     E+  S+ SEESV T SF + + GD+          
Sbjct: 181 QPSSELDLSLIPIYPI---KTLPFKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGG 240

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BLAST of CsGy4G022960 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.1e-45
Identity = 85/132 (64.39%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI++ +AQG+AT+F+AKFFGR+ L+SFISAVP  QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIP-----GIEI 120
           PALFQSLL+EACGRTVNPV+GA+G+L TGNW++CQAA +T+L GG LRPIP     G   
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query: 121 SANPTPNLDDSS 128
           +  P+P  +++S
Sbjct: 121 AGFPSPTSEEAS 132

[Close]

BLAST of CsGy4G022960 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 67/110 (60.91%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE C +R  L WI S E+Q NAT+FLAKF+GR+ L++ ++  P H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPI 111
           PA+F+SLL+EACGR VNP+ G+VGLL +GNWH+CQAA + ++ G  + PI
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112

[Close]

BLAST of CsGy4G022960 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.3e-35
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE C +R  L WI SPEAQ NAT+FLAKF+GR+ L++ I+A P H R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPI 111
           P +F+SLL EACGR VNP+ G+VGLL +GNW +CQ A + ++ G  ++ I
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEI 112

[Close]

BLAST of CsGy4G022960 vs. NCBI nr
Match: XP_004141401.1 (LOB domain-containing protein 39 [Cucumis sativus] >KGN55262.1 hypothetical protein Csa_012579 [Cucumis sativus])

HSP 1 Score: 422 bits (1085), Expect = 4.01e-149
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180
           PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE
Sbjct: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180

Query: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205
           SVMTSFGSGDLGDQRKETKLLNLFV
Sbjct: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205

[Close]

BLAST of CsGy4G022960 vs. NCBI nr
Match: XP_008452637.1 (PREDICTED: LOB domain-containing protein 39-like [Cucumis melo] >KAA0064436.1 LOB domain-containing protein 39-like [Cucumis melo var. makuwa])

HSP 1 Score: 392 bits (1008), Expect = 2.06e-137
Identity = 194/205 (94.63%), Postives = 196/205 (95.61%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQAAADTILNGGVLRPIPGIEIS NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180
           PNLDDSS TFN DVWTTTT HNLQFYPSTPSDFRCLPDL L R K H PLENRRSLDSEE
Sbjct: 121 PNLDDSSFTFNNDVWTTTT-HNLQFYPSTPSDFRCLPDLGLNRTKKH-PLENRRSLDSEE 180

Query: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205
           SVMTSFGSGDLG+QRKETKLLNLFV
Sbjct: 181 SVMTSFGSGDLGEQRKETKLLNLFV 203

[Close]

BLAST of CsGy4G022960 vs. NCBI nr
Match: XP_038899091.1 (LOB domain-containing protein 39-like [Benincasa hispida])

HSP 1 Score: 388 bits (997), Expect = 9.79e-136
Identity = 191/205 (93.17%), Postives = 196/205 (95.61%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE CVLR SLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR
Sbjct: 1   MSCNGCRVLRKGCSETCVLRGSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQAAADT+LNGGVLRPIPG EIS N T
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTVLNGGVLRPIPGFEISGNLT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180
           PNLD+S LTFNTDVWTTTT HNLQFYPSTPSDFRCLPDLSLGR KNH PLENRRSLDSEE
Sbjct: 121 PNLDESLLTFNTDVWTTTT-HNLQFYPSTPSDFRCLPDLSLGRGKNH-PLENRRSLDSEE 180

Query: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205
           SVMTSFGSGD+GD+RKETKLLNLFV
Sbjct: 181 SVMTSFGSGDVGDRRKETKLLNLFV 203

[Close]

BLAST of CsGy4G022960 vs. NCBI nr
Match: XP_023535944.1 (LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347 bits (890), Expect = 1.93e-119
Identity = 173/207 (83.57%), Postives = 190/207 (91.79%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSC+GCRVLRKGC+EACVLRSSLHWI SPEAQ NATLFLAKFFGRSDLLSFI+AVP+HQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIRSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQ AADT+L+GGVLRPIPGIE+S NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAADTVLSGGVLRPIPGIELSGNPT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSL--GRAKNHHPLENRRSLDS 180
            N+DDS+LTFNTDVWTTT   NLQ YPSTPSDFRCLPDL++  GRAKNH  LENRRSLDS
Sbjct: 121 RNVDDSTLTFNTDVWTTT-AQNLQLYPSTPSDFRCLPDLAVAAGRAKNH-TLENRRSLDS 180

Query: 181 EESVMTSFGSGDLGDQRKETKLLNLFV 205
           E+S+MTSFGSGD   +RK+ KLLNLF+
Sbjct: 181 EDSIMTSFGSGD---RRKQRKLLNLFI 202

[Close]

BLAST of CsGy4G022960 vs. NCBI nr
Match: KAG7024296.1 (LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343 bits (879), Expect = 9.15e-118
Identity = 172/207 (83.09%), Postives = 189/207 (91.30%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSC+GCRVLRKGC+EACVLRSSLHWI SPEAQ NATLFLAKFFGRSDLLSFI+AVP+HQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQ AA+T+L+GGVLRPIPGIE+S NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSL--GRAKNHHPLENRRSLDS 180
            N+DDSSLT NTDVWTTT   NLQ YPSTPSDFRCLPDL++  GRAKNH  LENRRSLDS
Sbjct: 121 RNVDDSSLTSNTDVWTTTG-QNLQLYPSTPSDFRCLPDLAVAAGRAKNH-TLENRRSLDS 180

Query: 181 EESVMTSFGSGDLGDQRKETKLLNLFV 205
           E+S+MTSFGSGD   +RK+ KLLNLF+
Sbjct: 181 EDSIMTSFGSGD---RRKQRKLLNLFI 202

[Close]

BLAST of CsGy4G022960 vs. ExPASy TrEMBL
Match: A0A0A0L3S5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV=1)

HSP 1 Score: 422 bits (1085), Expect = 1.94e-149
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180
           PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE
Sbjct: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180

Query: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205
           SVMTSFGSGDLGDQRKETKLLNLFV
Sbjct: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205

[Close]

BLAST of CsGy4G022960 vs. ExPASy TrEMBL
Match: A0A5A7VDI5 (LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001480 PE=3 SV=1)

HSP 1 Score: 392 bits (1008), Expect = 9.97e-138
Identity = 194/205 (94.63%), Postives = 196/205 (95.61%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQAAADTILNGGVLRPIPGIEIS NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180
           PNLDDSS TFN DVWTTTT HNLQFYPSTPSDFRCLPDL L R K H PLENRRSLDSEE
Sbjct: 121 PNLDDSSFTFNNDVWTTTT-HNLQFYPSTPSDFRCLPDLGLNRTKKH-PLENRRSLDSEE 180

Query: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205
           SVMTSFGSGDLG+QRKETKLLNLFV
Sbjct: 181 SVMTSFGSGDLGEQRKETKLLNLFV 203

[Close]

BLAST of CsGy4G022960 vs. ExPASy TrEMBL
Match: A0A1S3BVG9 (LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE=3 SV=1)

HSP 1 Score: 392 bits (1008), Expect = 9.97e-138
Identity = 194/205 (94.63%), Postives = 196/205 (95.61%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQAAADTILNGGVLRPIPGIEIS NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180
           PNLDDSS TFN DVWTTTT HNLQFYPSTPSDFRCLPDL L R K H PLENRRSLDSEE
Sbjct: 121 PNLDDSSFTFNNDVWTTTT-HNLQFYPSTPSDFRCLPDLGLNRTKKH-PLENRRSLDSEE 180

Query: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205
           SVMTSFGSGDLG+QRKETKLLNLFV
Sbjct: 181 SVMTSFGSGDLGEQRKETKLLNLFV 203

[Close]

BLAST of CsGy4G022960 vs. ExPASy TrEMBL
Match: A0A6J1FEE1 (LOB domain-containing protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443315 PE=3 SV=1)

HSP 1 Score: 341 bits (874), Expect = 2.56e-117
Identity = 171/207 (82.61%), Postives = 188/207 (90.82%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSC+GCRVLRKGC+EACVLRSSLHWI SPEAQ NATLFLAKFFGRSDLLSFI+AVP+HQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQ AA+T+L+GGVLRPIPGIE+S NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLG--RAKNHHPLENRRSLDS 180
            N+DDSSLT NTDVWTTT   NLQ YPSTPSDFRCLPDL++   RAKNH P ENRRSLDS
Sbjct: 121 RNVDDSSLTSNTDVWTTTG-QNLQLYPSTPSDFRCLPDLAVAAVRAKNHTP-ENRRSLDS 180

Query: 181 EESVMTSFGSGDLGDQRKETKLLNLFV 205
           E+S+MTSFGSGD   +RK+ KLLNLF+
Sbjct: 181 EDSIMTSFGSGD---RRKQRKLLNLFI 202

[Close]

BLAST of CsGy4G022960 vs. ExPASy TrEMBL
Match: A0A6J1IIW5 (LOB domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111477277 PE=3 SV=1)

HSP 1 Score: 333 bits (855), Expect = 1.69e-114
Identity = 165/205 (80.49%), Postives = 182/205 (88.78%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSC+GCRVLRKGC+EACVLRSSLHWI SPEAQ NATLFLAKFFGRSDLLSFI+AVP+HQR
Sbjct: 1   MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPVSGAVGL S+GNWHVCQ AADT+L+GGVLRPIPGIE+S NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLFSSGNWHVCQLAADTVLSGGVLRPIPGIELSGNPT 120

Query: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEE 180
            NLDDSSLTFNTDVWTTT   NLQ YPS+PSDFRCLPDL++         +NRRSLDSE+
Sbjct: 121 RNLDDSSLTFNTDVWTTT-AQNLQLYPSSPSDFRCLPDLAVAA----RTAKNRRSLDSED 180

Query: 181 SVMTSFGSGDLGDQRKETKLLNLFV 205
           S+MTSFGSGD   +RK+ KLLNLF+
Sbjct: 181 SIMTSFGSGD---RRKQRKLLNLFI 197

[Close]

BLAST of CsGy4G022960 vs. TAIR 10
Match: AT4G37540.1 (LOB domain-containing protein 39 )

HSP 1 Score: 194.9 bits (494), Expect = 6.4e-50
Identity = 118/240 (49.17%), Postives = 145/240 (60.42%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE C+LR  L WI+S E+QG+AT+F+AKFFGR+ L+SFIS+VP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120
           PALFQSLLFEACGRTVNPV+GAVG+L T NWHVCQAA +T+L GG LRPI  +  S +  
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLM 120

Query: 121 PNLDDSSLTFNTDVWTTTTVH--------NLQFYPSTPSDFRCLPDLSLGRAKNHH---- 180
            + D+SS  ++ DV    T H          +   S  +  R   D  L    NH     
Sbjct: 121 ISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLT 180

Query: 181 ----PLE-------------NRRSLDSEESVMTS-FGSGDLGDQRK-----ETKLLNLFV 206
               P+              +R    SEESV TS + +G  GD ++     E KLLNLFV
Sbjct: 181 APAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240

[Close]

BLAST of CsGy4G022960 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 191.0 bits (484), Expect = 9.2e-49
Identity = 118/249 (47.39%), Postives = 146/249 (58.63%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI+SPEAQG+AT+F+AKFFGR+ L+SFISAVP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIP----GIEIS 120
           PALFQSLL+EACGRTVNPV+GAVGLL TGNW+VCQAA +T+L GG L+PIP    G   +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 121 ANPTPNLDDSS--------LTFNTDVWTTTTVHNLQF----------------------- 180
             P+P  D++S        L    D       H+ +F                       
Sbjct: 121 GFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQ 180

Query: 181 YPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEESVMT-SFGSGDLGDQ---------R 205
            PS+  D   +P   +   K     E+  S+ SEESV T SF + + GD+          
Sbjct: 181 QPSSELDLSLIPIYPI---KTLPFKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGG 240

[Close]

BLAST of CsGy4G022960 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 )

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-46
Identity = 85/132 (64.39%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI++ +AQG+AT+F+AKFFGR+ L+SFISAVP  QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIP-----GIEI 120
           PALFQSLL+EACGRTVNPV+GA+G+L TGNW++CQAA +T+L GG LRPIP     G   
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query: 121 SANPTPNLDDSS 128
           +  P+P  +++S
Sbjct: 121 AGFPSPTSEEAS 132

[Close]

BLAST of CsGy4G022960 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-38
Identity = 67/110 (60.91%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           MSCNGCRVLRKGCSE C +R  L WI S E+Q NAT+FLAKF+GR+ L++ ++  P H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPI 111
           PA+F+SLL+EACGR VNP+ G+VGLL +GNWH+CQAA + ++ G  + PI
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112

[Close]

BLAST of CsGy4G022960 vs. TAIR 10
Match: AT1G68510.1 (LOB domain-containing protein 42 )

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-36
Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60
           +SCNGCRVLRKGC++ C +R  L WI S ++Q NATLFLAKF+GR+ LL+ I + P H R
Sbjct: 3   ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62

Query: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVL--RPIPGIEISAN 120
           PA+F+SLL+EACGR VNPV G+VGL+ +GNW  CQAA D +LNG  +   P+P    S  
Sbjct: 63  PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASHQ 122

Query: 121 PTP 122
             P
Sbjct: 123 IIP 125

The following BLAST results are available for this feature:

BLAST of CsGy4G022960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZE8	9.0e-49	49.17	LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 S...	[more]
Q9SN23	1.3e-47	47.39	LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S...	[more]
Q9FN11	2.1e-45	64.39	LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 S...	[more]
Q9ZW96	1.0e-36	60.91	LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S...	[more]
Q9M886	3.3e-35	60.91	LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S...	[more]

BLAST of CsGy4G022960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141401.1	4.01e-149	100.00	LOB domain-containing protein 39 [Cucumis sativus] >KGN55262.1 hypothetical prot...	[more]
XP_008452637.1	2.06e-137	94.63	PREDICTED: LOB domain-containing protein 39-like [Cucumis melo] >KAA0064436.1 LO...	[more]
XP_038899091.1	9.79e-136	93.17	LOB domain-containing protein 39-like [Benincasa hispida]	[more]
XP_023535944.1	1.93e-119	83.57	LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
KAG7024296.1	9.15e-118	83.09	LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of CsGy4G022960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S5	1.94e-149	100.00	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV...	[more]
A0A5A7VDI5	9.97e-138	94.63	LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BVG9	9.97e-138	94.63	LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE...	[more]
A0A6J1FEE1	2.56e-117	82.61	LOB domain-containing protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443...	[more]
A0A6J1IIW5	1.69e-114	80.49	LOB domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC11147727...	[more]

BLAST of CsGy4G022960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37540.1	6.4e-50	49.17	LOB domain-containing protein 39	[more]
AT3G49940.1	9.2e-49	47.39	LOB domain-containing protein 38	[more]
AT5G67420.1	1.5e-46	64.39	LOB domain-containing protein 37	[more]
AT1G67100.1	7.3e-38	60.91	LOB domain-containing protein 40	[more]
AT1G68510.1	2.4e-36	56.91	LOB domain-containing protein 42	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 2..100 e-value: 1.4E-23 score: 83.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 1..107 score: 17.408188
None	No IPR available	PANTHER	PTHR31304:SF38	LOB DOMAIN-CONTAINING PROTEIN 39-LIKE	coord: 1..205
None	No IPR available	PANTHER	PTHR31304	LOB DOMAIN-CONTAINING PROTEIN 38	coord: 1..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G022960.2	CsGy4G022960.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression