CsGy4G019275 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G019275
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	Gy14Chr4: 25465130 .. 25466830 (-)
RNA-Seq Expression	CsGy4G019275
Synteny	CsGy4G019275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTCTAAGCTGCCTTATCCACTACTGTAATGAGAAAAGGAGTTTAAAAGGCTTTCATTTTGAGAATCTGTCAGAGGATTTAACCCATCTTCAGTACGCAGACGACACGCTTCTTTTTTCTTCCTGGGAGGATGGAAGTTTGGAGAACTGGTGGAAGGTGGTTAATATCTTCCTTATGGGAGCCGGTCTTTCCCTTAATAGAGCTAAAACCTCCCTGATCGGTATTAACCTTAGCAATGATGACTTAGCTCCTTTTAGTGAATCTACGGGATGCTCGGTTGATAATCTTCCCTTTAAATATTTGGGCTTCTCTATTGGAAGGGGTCATAATAGAAAAGAGATGTGGAACAATCTTGAAGAGAGATTCAGACACAAATTTGATAGGTGGAGGAATGTATCCCTCTCCAAAGGGGGTAGACTAACTCTGGTGCAATCAGTTCTCAACAGCCTCCCTTGTTATCTCTTCTCCCTTGCTCAAGCTCCAGTTGGTGTTATTAATACATTGGAACAGATGATCAGGAAGTTTGTTTGGACAGGTGGATCTACGAATCCAATTGCTCATCTCGTCAACTGGGAATGCACTTCCACCCCAACTTGTTATGGTGGTCTTGGGATTGGCTCTTTTAGGCAAAAGAATATTGCTCTTCTCACTAAATGGTTTTGGAGGTTTAGCAAGGAAGAAACCTCATTATGGAGGCGATTAATTGTGGCCATCTATGGTTTAGATGAGAATGGGTGGTCCACCAAAGATCCAAACAGGGAAAAATCTCATAGATTATGGGCTGGTATTTTAAAGCATAAGGAGATATTCTTTAATTTTTCTGCTTTTGTTTTGGGAGAAGGAACAAAAATCAAATTTTGGAAGGATAAATGGTGTGTCGCGGAAACACTTGCAGAAAAATTCCCTAACTTATTCTCTTTGGCGCTGAATAAGGAGGCTTATGTGGCTGAATGCTGGTGTACTGCACTCATTCTTGGAGTTTGGGCCTTAGAAGAAATATGCTCGACAACGAGATTGCCAATGCGGCCTCAGCTTTAGAAATTCTTCACTCTTGGGCCCCCACTGAAAGGAATGATAGTCTTAAATGGACTCCTAACATGAATGGCAACTTCACTACAAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCAACATTGTTGTTCCCTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTCAACACCCATGAGAAACTACAAAAAAAAATTCAGAACACATTGCTTAGCCCCTCGATGTGTTGCCTATGCGCTAAAGATGAGGAAACCTTGGATCATTTATTTCTACATTGTCCCTTCACAAGAAAAGCTTGGAACACTCTGTTTGGTATTTTTGATTTGGAGCTTTGCCTTCCTAGCAAGATTGATAGCTGGATGATTGAAGGTCTTAACATTAGAGGTTACAGCCCTAAAGGAAACATCTTATGGAAATGTGCGACGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATTTTTGAAGATAGATTTAATTCTTTTGATTATTTTTGGACTGTGGTTCAACACACAGCCTCTTGGTGGAGTACGAATTACACCATACACTTTTGTAATTATAGCCTTTCTATGATTTTCAACAATTGGAAGGCCATTATGTCTTAGTTCCCT

mRNA sequence

TGCTCTAAGCTGCCTTATCCACTACTGTAATGAGAAAAGGAGTTTAAAAGGCTTTCATTTTGAGAATCTGTCAGAGGATTTAACCCATCTTCAGTACGCAGACGACACGCTTCTTTTTTCTTCCTGGGAGGATGGAAGTTTGGAGAACTGGTGGAAGGTGGTTAATATCTTCCTTATGGGAGCCGGTCTTTCCCTTAATAGAGCTAAAACCTCCCTGATCGGTATTAACCTTAGCAATGATGACTTAGCTCCTTTTAGTGAATCTACGGGATGCTCGGTTGATAATCTTCCCTTTAAATATTTGGGCTTCTCTATTGGAAGGGGTCATAATAGAAAAGAGATGTGGAACAATCTTGAAGAGAGATTCAGACACAAATTTGATAGGTGGAGGAATGTATCCCTCTCCAAAGGGGGTAGACTAACTCTGGTGCAATCAGTTCTCAACAGCCTCCCTTGTTATCTCTTCTCCCTTGCTCAAGCTCCAGTTGGTGTTATTAATACATTGGAACAGATGATCAGGAAGTTTGTTTGGACAGGTGGATCTACGAATCCAATTGCTCATCTCGTCAACTGGGAATGCACTTCCACCCCAACTTGTTATGGTGGTCTTGGGATTGGCTCTTTTAGGCAAAAGAATATTGCTCTTCTCACTAAATGGTTTTGGAGGTTTAGCAAGGAAGAAACCTCATTATGGAGGCGATTAATTGTGGCCATCTATGGTTTAGATGAGAATGGGTGGTCCACCAAAGATCCAAACAGGGAAAAATCTCATAGATTATGGGCTGGTATTTTAAAGCATAAGGAGATATTCTTTAATTTTTCTGCTTTTGTTTTGGGAGAAGGAACAAAAATCAAATTTTGGAAGGATAAATGGTGTGTCGCGGAAACACTTGCAGAAAAATTCCCTAACTTATTCTCTTTGGCGCTGAATAAGGAGGCTTATGTGGCTGAATGCTGGTGTACTGCACTCATTCTTGGAGTTTGGGCCTTAGAAGAAATATGCTCGACAACGAGATTGCCAATGCGGCCTCAGCTTTAGAAATTCTTCACTCTTGGGCCCCCACTGAAAGGAATGATAGTCTTAAATGGACTCCTAACATGAATGGCAACTTCACTACAAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCAACATTGTTGTTCCCTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTCAACACCCATGAGAAACTACAAAAAAAAATTCAGAACACATTGCTTAGCCCCTCGATGTGTTGCCTATGCGCTAAAGATGAGGAAACCTTGGATCATTTATTTCTACATTGTCCCTTCACAAGAAAAGCTTGGAACACTCTGTTTGGTATTTTTGATTTGGAGCTTTGCCTTCCTAGCAAGATTGATAGCTGGATGATTGAAGGTCTTAACATTAGAGGTTACAGCCCTAAAGGAAACATCTTATGGAAATGTGCGACGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATTTTTGAAGATAGATTTAATTCTTTTGATTATTTTTGGACTGTGGTTCAACACACAGCCTCTTGGTGGAGTACGAATTACACCATACACTTTTGTAATTATAGCCTTTCTATGATTTTCAACAATTGGAAGGCCATTATGTCTTAGTTCCCT

Coding sequence (CDS)

ATGGGAGCCGGTCTTTCCCTTAATAGAGCTAAAACCTCCCTGATCGGTATTAACCTTAGCAATGATGACTTAGCTCCTTTTAGTGAATCTACGGGATGCTCGGTTGATAATCTTCCCTTTAAATATTTGGGCTTCTCTATTGGAAGGGGTCATAATAGAAAAGAGATGTGGAACAATCTTGAAGAGAGATTCAGACACAAATTTGATAGGTGGAGGAATGTATCCCTCTCCAAAGGGGGTAGACTAACTCTGGTGCAATCAGTTCTCAACAGCCTCCCTTGTTATCTCTTCTCCCTTGCTCAAGCTCCAGTTGGTGTTATTAATACATTGGAACAGATGATCAGGAAGTTTGTTTGGACAGGTGGATCTACGAATCCAATTGCTCATCTCGTCAACTGGGAATGCACTTCCACCCCAACTTGTTATGGTGGTCTTGGGATTGGCTCTTTTAGGCAAAAGAATATTGCTCTTCTCACTAAATGGTTTTGGAGGTTTAGCAAGGAAGAAACCTCATTATGGAGGCGATTAATTGTGGCCATCTATGGTTTAGATGAGAATGGGTGGTCCACCAAAGATCCAAACAGGGAAAAATCTCATAGATTATGGGCTGGTATTTTAAAGCATAAGGAGATATTCTTTAATTTTTCTGCTTTTGTTTTGGGAGAAGGAACAAAAATCAAATTTTGGAAGGATAAATGGTGTGTCGCGGAAACACTTGCAGAAAAATTCCCTAACTTATTCTCTTTGGCGCTGAATAAGGAGGCTTATGTGGCTGAATGCTGGTGTACTGCACTCATTCTTGGAGTTTGGGCCTTAGAAGAAATATGCTCGACAACGAGATTGCCAATGCGGCCTCAGCTTTAG

Protein sequence

MGAGLSLNRAKTSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEERFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGGSTNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYGLDENGWSTKDPNREKSHRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKWCVAETLAEKFPNLFSLALNKEAYVAECWCTALILGVWALEEICSTTRLPMRPQL*

Homology

[Close]

BLAST of CsGy4G019275 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-23
Identity = 57/189 (30.16%), Postives = 97/189 (51.32%), Query Frame = 0


Query: 54  KEMWNNLEERFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQM 113
           K+ +  + ER   +   WR  +LS  GRLTL ++VL+S+P +  S    P  ++N L+Q+
Sbjct: 10  KDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQL 69

Query: 114 IRKFVWTGGSTNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLW 173
            R F+W   +     HLV W    +P   GGLG+ + +  N AL++K  WR  +E+ SLW
Sbjct: 70  SRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLW 129

Query: 174 RRLIVAIYGLDENGWSTKDPNREKSHRLWAGI-LKHKEIFFNFSAFVLGEGTKIKFWKDK 233
             ++   Y + E   S     +      W  I +  +++  +   ++ G+G +I+FW D+
Sbjct: 130 TLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDR 189

Query: 234 WCVAETLAE 242
           W   + L E
Sbjct: 190 WVSGKPLLE 198

[Close]

BLAST of CsGy4G019275 vs. NCBI nr
Match: KAA0041036.1 (putative plant SNARE 11 [Cucumis melo var. makuwa])

HSP 1 Score: 240 bits (613), Expect = 1.42e-70
Identity = 117/184 (63.59%), Postives = 134/184 (72.83%), Query Frame = 0


Query: 12  TSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEERFRHKFDRW 71
           T+   I+L + DL  +  + GC VD LPF YLGFSIG   NRKE WN+LEERFR+K DRW
Sbjct: 287 TNAHSIDLDSADLDSYVNTLGCMVDTLPFNYLGFSIGGASNRKEAWNSLEERFRYKIDRW 346

Query: 72  RNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGGSTNPIAHLV 131
           RNVSLSKGGRLTL QSVLNSLPCYLFSL Q  +G IN +E+++  FV   GST   +HLV
Sbjct: 347 RNVSLSKGGRLTLTQSVLNSLPCYLFSLLQPLIGAINKMEKIVSDFVRMRGSTKLASHLV 406

Query: 132 NWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYGLDENGWSTK 191
             + T  P CYGGLGIGSFRQKN ALLTKW W F KE  +L R L+ AIY L+ENGWSTK
Sbjct: 407 KLDTTFCPICYGGLGIGSFRQKNNALLTKWLWGFCKEYNALRRHLVAAIYALEENGWSTK 466

Query: 192 DPNR 195
             NR
Sbjct: 467 ALNR 470

[Close]

BLAST of CsGy4G019275 vs. NCBI nr
Match: CAN71190.1 (hypothetical protein VITISV_019118 [Vitis vinifera])

HSP 1 Score: 219 bits (559), Expect = 1.46e-65
Identity = 114/287 (39.72%), Postives = 158/287 (55.05%), Query Frame = 0


Query: 3   AGLSLNRAKTSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEE 62
           +G  +N AK+ +I +    D++   +   GC V  LP  YLG  +G  +    +W+ +EE
Sbjct: 15  SGFRINLAKSEIIPVG-EVDEILEMAVELGCKVGQLPSTYLGLPLGAPNKAGYVWDGVEE 74

Query: 63  RFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGG 122
           R R K   W+   LSKGGR+TL++S L S+P Y  SL + P GV   LE++ R F+W GG
Sbjct: 75  RMRWKLALWKRQYLSKGGRITLIKSTLASMPLYQLSLFRMPKGVARRLEKLQRDFLWGGG 134

Query: 123 STNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYG 182
           ST   AHLV+WE        GGLG+    Q N A L KW WRF++ +  +W+R++VA YG
Sbjct: 135 STERKAHLVSWEKVCVSKEKGGLGLRKIAQLNKAXLGKWVWRFARAKDEMWKRVLVAKYG 194

Query: 183 LDENGWSTKDPNREKSHRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKWCVAETLAEK 242
            ++ GW TK  N      LW  I+K     +N   F +G+GTKI+FWKD WC    LA  
Sbjct: 195 QEDFGWRTKKANGAFGVGLWKEIMKEAXWCWNNXTFKVGKGTKIRFWKDTWCGDVELARS 254

Query: 243 FPNLFSLALNKEAYVAECWCTALILGVWALEEICSTT--RLPMRPQL 287
           FP LF++A  K A V + W      G W L  + S     LP+  +L
Sbjct: 255 FPQLFNVAAQKGATVGDLWDQNAGQGEWNLRFLRSFNDWELPLVEEL 300

[Close]

BLAST of CsGy4G019275 vs. NCBI nr
Match: RVW22627.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 223 bits (567), Expect = 3.09e-65
Identity = 115/287 (40.07%), Postives = 160/287 (55.75%), Query Frame = 0


Query: 3   AGLSLNRAKTSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEE 62
           +G  +N AK+ +I +    D++   +   GC V  LP  YLG  +G  +    +W+ +EE
Sbjct: 15  SGFRINLAKSEIIPVG-EVDEILEMAVELGCKVGQLPSTYLGLPLGAPNKAGYVWDGVEE 74

Query: 63  RFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGG 122
           R R K   W+   LSKGGR+TL++S L S+P Y  SL + P GV   LE++ R F+W GG
Sbjct: 75  RMRWKLALWKRQYLSKGGRITLIKSTLASMPLYQLSLFRMPKGVARRLEKLQRDFLWGGG 134

Query: 123 STNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYG 182
           ST   AHLV+WE        GGLG+    Q N ALL KW WRF++ +  +W+R++VA YG
Sbjct: 135 STERKAHLVSWEKVCVSKEKGGLGLRKIAQLNKALLGKWVWRFARAKDEMWKRVLVAKYG 194

Query: 183 LDENGWSTKDPNREKSHRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKWCVAETLAEK 242
            ++ GW TK  N      LW  I+K  +  +N   F +G+GTKI+FWKD WC    LA  
Sbjct: 195 QEDFGWRTKKANGAFGVGLWKEIMKEADWCWNNMTFKVGKGTKIRFWKDTWCGDVELARS 254

Query: 243 FPNLFSLALNKEAYVAECWCTALILGVWALEEICSTT--RLPMRPQL 287
           FP LF++A  K A V + W      G W L  + S     LP+  +L
Sbjct: 255 FPQLFNVAAQKGATVGDLWDQNAGQGEWNLRFLRSFNDWELPLVEEL 300

[Close]

BLAST of CsGy4G019275 vs. NCBI nr
Match: RVW83382.1 (putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Vitis vinifera])

HSP 1 Score: 223 bits (567), Expect = 1.82e-63
Identity = 112/268 (41.79%), Postives = 152/268 (56.72%), Query Frame = 0


Query: 3   AGLSLNRAKTSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEE 62
           +GL +NR K+ +I +    D L       GC +  LPF YLG  +G       +W+ +EE
Sbjct: 367 SGLKVNRDKSEVISVERV-DYLENIVLVLGCRIGKLPFSYLGLPLGAPFKSPRVWDVVEE 426

Query: 63  RFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGG 122
           RFR +   W+   LSKGGRLTL+++ L+SLP YL SL   P  V   LE++ R F+W GG
Sbjct: 427 RFRKRLSLWKRQYLSKGGRLTLIKNTLSSLPIYLMSLLVIPQKVCARLEKIQRDFLWDGG 486

Query: 123 STNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYG 182
           +     HLVNW    T    GGLGI S    N ALL KW W+F+ E  SLW+++I+  YG
Sbjct: 487 ALEKKPHLVNWSAVCTDMRQGGLGIRSLVALNKALLGKWNWKFAIERNSLWKQVIIDKYG 546

Query: 183 LDENGWSTKDPNREKSHRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKWCVAETLAEK 242
             E GW +K+        LW  I K  +I  + S F++G G K+KFWKD WC  + L + 
Sbjct: 547 EKEGGWCSKEVRGAYGVGLWKAIRKDWKIISSRSRFIVGNGRKVKFWKDLWCEDQALKDA 606

Query: 243 FPNLFSLALNKEAYVAECWCTALILGVW 270
           FPNLF LA+NK+ +V + W     +G W
Sbjct: 607 FPNLFRLAVNKDQWVCDAWEEEGEVGSW 633

[Close]

BLAST of CsGy4G019275 vs. NCBI nr
Match: XP_010646830.1 (PREDICTED: uncharacterized protein LOC104878337, partial [Vitis vinifera])

HSP 1 Score: 217 bits (552), Expect = 2.40e-63
Identity = 105/271 (38.75%), Postives = 156/271 (57.56%), Query Frame = 0


Query: 3   AGLSLNRAKTSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEE 62
           +GL +N +K+ +I +    DD+   +   GC V +LP +YLG  +G  +    MW+ +EE
Sbjct: 177 SGLKINLSKSKIIPVG-EVDDIEELAVELGCRVGSLPSQYLGLPLGAPNKASSMWDGVEE 236

Query: 63  RFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGG 122
           R R +   W+   +SKGGR+TL++S L S+P Y  SL + P  V+  LE++ R F+W GG
Sbjct: 237 RVRRRLALWKRQFISKGGRITLIKSTLASIPIYQMSLFRMPKIVVRRLEKLQRDFLWGGG 296

Query: 123 STNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYG 182
           +     HLV WE        GGLG+      N ALL KW WRF+ +  +LW+++I+A +G
Sbjct: 297 NMERKVHLVKWEIVCGDKGRGGLGLRKLGLLNKALLGKWIWRFACDRENLWKQVILAKFG 356

Query: 183 LDENGWSTKDPNREKSHRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKWCVAETLAEK 242
            +E GW +K PN      LW  I+K  +  ++   F++G+GTKI+FW D WC    L++ 
Sbjct: 357 QEEYGWRSKKPNGAFGVGLWKEIMKETDWCWDNLEFMVGKGTKIRFWTDVWCAGTALSQT 416

Query: 243 FPNLFSLALNKEAYVAECWCTALILGVWALE 273
           FP+LF+LA N+ A V E W      G W L 
Sbjct: 417 FPHLFALAANRNATVEEMWDQNSDQGGWNLR 446

[Close]

BLAST of CsGy4G019275 vs. ExPASy TrEMBL
Match: A0A5A7TG65 (Putative plant SNARE 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold477G00050 PE=4 SV=1)

HSP 1 Score: 240 bits (613), Expect = 6.86e-71
Identity = 117/184 (63.59%), Postives = 134/184 (72.83%), Query Frame = 0


Query: 12  TSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEERFRHKFDRW 71
           T+   I+L + DL  +  + GC VD LPF YLGFSIG   NRKE WN+LEERFR+K DRW
Sbjct: 287 TNAHSIDLDSADLDSYVNTLGCMVDTLPFNYLGFSIGGASNRKEAWNSLEERFRYKIDRW 346

Query: 72  RNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGGSTNPIAHLV 131
           RNVSLSKGGRLTL QSVLNSLPCYLFSL Q  +G IN +E+++  FV   GST   +HLV
Sbjct: 347 RNVSLSKGGRLTLTQSVLNSLPCYLFSLLQPLIGAINKMEKIVSDFVRMRGSTKLASHLV 406

Query: 132 NWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYGLDENGWSTK 191
             + T  P CYGGLGIGSFRQKN ALLTKW W F KE  +L R L+ AIY L+ENGWSTK
Sbjct: 407 KLDTTFCPICYGGLGIGSFRQKNNALLTKWLWGFCKEYNALRRHLVAAIYALEENGWSTK 466

Query: 192 DPNR 195
             NR
Sbjct: 467 ALNR 470

[Close]

BLAST of CsGy4G019275 vs. ExPASy TrEMBL
Match: A5AEG6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019118 PE=4 SV=1)

HSP 1 Score: 219 bits (559), Expect = 7.05e-66
Identity = 114/287 (39.72%), Postives = 158/287 (55.05%), Query Frame = 0


Query: 3   AGLSLNRAKTSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEE 62
           +G  +N AK+ +I +    D++   +   GC V  LP  YLG  +G  +    +W+ +EE
Sbjct: 15  SGFRINLAKSEIIPVG-EVDEILEMAVELGCKVGQLPSTYLGLPLGAPNKAGYVWDGVEE 74

Query: 63  RFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGG 122
           R R K   W+   LSKGGR+TL++S L S+P Y  SL + P GV   LE++ R F+W GG
Sbjct: 75  RMRWKLALWKRQYLSKGGRITLIKSTLASMPLYQLSLFRMPKGVARRLEKLQRDFLWGGG 134

Query: 123 STNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYG 182
           ST   AHLV+WE        GGLG+    Q N A L KW WRF++ +  +W+R++VA YG
Sbjct: 135 STERKAHLVSWEKVCVSKEKGGLGLRKIAQLNKAXLGKWVWRFARAKDEMWKRVLVAKYG 194

Query: 183 LDENGWSTKDPNREKSHRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKWCVAETLAEK 242
            ++ GW TK  N      LW  I+K     +N   F +G+GTKI+FWKD WC    LA  
Sbjct: 195 QEDFGWRTKKANGAFGVGLWKEIMKEAXWCWNNXTFKVGKGTKIRFWKDTWCGDVELARS 254

Query: 243 FPNLFSLALNKEAYVAECWCTALILGVWALEEICSTT--RLPMRPQL 287
           FP LF++A  K A V + W      G W L  + S     LP+  +L
Sbjct: 255 FPQLFNVAAQKGATVGDLWDQNAGQGEWNLRFLRSFNDWELPLVEEL 300

[Close]

BLAST of CsGy4G019275 vs. ExPASy TrEMBL
Match: A0A438CHF1 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1084 PE=4 SV=1)

HSP 1 Score: 223 bits (567), Expect = 1.50e-65
Identity = 115/287 (40.07%), Postives = 160/287 (55.75%), Query Frame = 0


Query: 3   AGLSLNRAKTSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEE 62
           +G  +N AK+ +I +    D++   +   GC V  LP  YLG  +G  +    +W+ +EE
Sbjct: 15  SGFRINLAKSEIIPVG-EVDEILEMAVELGCKVGQLPSTYLGLPLGAPNKAGYVWDGVEE 74

Query: 63  RFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGG 122
           R R K   W+   LSKGGR+TL++S L S+P Y  SL + P GV   LE++ R F+W GG
Sbjct: 75  RMRWKLALWKRQYLSKGGRITLIKSTLASMPLYQLSLFRMPKGVARRLEKLQRDFLWGGG 134

Query: 123 STNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYG 182
           ST   AHLV+WE        GGLG+    Q N ALL KW WRF++ +  +W+R++VA YG
Sbjct: 135 STERKAHLVSWEKVCVSKEKGGLGLRKIAQLNKALLGKWVWRFARAKDEMWKRVLVAKYG 194

Query: 183 LDENGWSTKDPNREKSHRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKWCVAETLAEK 242
            ++ GW TK  N      LW  I+K  +  +N   F +G+GTKI+FWKD WC    LA  
Sbjct: 195 QEDFGWRTKKANGAFGVGLWKEIMKEADWCWNNMTFKVGKGTKIRFWKDTWCGDVELARS 254

Query: 243 FPNLFSLALNKEAYVAECWCTALILGVWALEEICSTT--RLPMRPQL 287
           FP LF++A  K A V + W      G W L  + S     LP+  +L
Sbjct: 255 FPQLFNVAAQKGATVGDLWDQNAGQGEWNLRFLRSFNDWELPLVEEL 300

[Close]

BLAST of CsGy4G019275 vs. ExPASy TrEMBL
Match: A0A438HFZ0 (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Vitis vinifera OX=29760 GN=MEE29_2 PE=4 SV=1)

HSP 1 Score: 223 bits (567), Expect = 8.84e-64
Identity = 112/268 (41.79%), Postives = 152/268 (56.72%), Query Frame = 0


Query: 3   AGLSLNRAKTSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEE 62
           +GL +NR K+ +I +    D L       GC +  LPF YLG  +G       +W+ +EE
Sbjct: 367 SGLKVNRDKSEVISVERV-DYLENIVLVLGCRIGKLPFSYLGLPLGAPFKSPRVWDVVEE 426

Query: 63  RFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGG 122
           RFR +   W+   LSKGGRLTL+++ L+SLP YL SL   P  V   LE++ R F+W GG
Sbjct: 427 RFRKRLSLWKRQYLSKGGRLTLIKNTLSSLPIYLMSLLVIPQKVCARLEKIQRDFLWDGG 486

Query: 123 STNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYG 182
           +     HLVNW    T    GGLGI S    N ALL KW W+F+ E  SLW+++I+  YG
Sbjct: 487 ALEKKPHLVNWSAVCTDMRQGGLGIRSLVALNKALLGKWNWKFAIERNSLWKQVIIDKYG 546

Query: 183 LDENGWSTKDPNREKSHRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKWCVAETLAEK 242
             E GW +K+        LW  I K  +I  + S F++G G K+KFWKD WC  + L + 
Sbjct: 547 EKEGGWCSKEVRGAYGVGLWKAIRKDWKIISSRSRFIVGNGRKVKFWKDLWCEDQALKDA 606

Query: 243 FPNLFSLALNKEAYVAECWCTALILGVW 270
           FPNLF LA+NK+ +V + W     +G W
Sbjct: 607 FPNLFRLAVNKDQWVCDAWEEEGEVGSW 633

[Close]

BLAST of CsGy4G019275 vs. ExPASy TrEMBL
Match: A0A438EZP2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_699 PE=4 SV=1)

HSP 1 Score: 214 bits (546), Expect = 1.29e-63
Identity = 104/271 (38.38%), Postives = 156/271 (57.56%), Query Frame = 0


Query: 3   AGLSLNRAKTSLIGINLSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEE 62
           +GL +N  K+ +I +    DD+   +   GC V +L  +YLG  +G  +    +W+ +EE
Sbjct: 118 SGLKINLGKSEIIPVG-EVDDIEELAVEIGCRVGSLLSQYLGLPLGAPNKASSVWDGVEE 177

Query: 63  RFRHKFDRWRNVSLSKGGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGG 122
           R R +   W+   +SKGGR+TL++S L S+P Y  SL + P  V+  LE++ R F+W GG
Sbjct: 178 RVRRRLALWKRQFISKGGRITLIKSTLASIPIYQMSLFRMPKIVVKRLEKLQRDFLWGGG 237

Query: 123 STNPIAHLVNWECTSTPTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYG 182
           +     HLVNWE        GGLG+      N ALL KW WRF+ E  +LW+++IVA +G
Sbjct: 238 NRERKVHLVNWEIVCGDKERGGLGLRKLGLLNKALLGKWLWRFACERENLWKQVIVAKFG 297

Query: 183 LDENGWSTKDPNREKSHRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKWCVAETLAEK 242
            +++GW +K PN      +W  I+K  +  ++   F++G+GTKI+FW D WC    L++ 
Sbjct: 298 QEDDGWKSKKPNGAFGVGVWKEIMKETDWCWDNIEFMVGKGTKIRFWTDVWCAGTALSQT 357

Query: 243 FPNLFSLALNKEAYVAECWCTALILGVWALE 273
           FP+LF+LA N+ A V E W      G W L 
Sbjct: 358 FPHLFALAANRNATVEEMWDKNSDQGGWNLR 387

[Close]

BLAST of CsGy4G019275 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-15
Identity = 56/215 (26.05%), Postives = 83/215 (38.60%), Query Frame = 0


Query: 19  LSNDDLAPFSESTGCSVDNLPFKYLGFSIGRGHNRKEMWNNLEERFRHKFDRWRNVSLSK 78
           + ++D A    S   +   LP +YLG  +         +  L E+ R +  +W    LS 
Sbjct: 4   VKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSF 63

Query: 79  GGRLTLVQSVLNSLPCYLFSLAQAPVGVINTLEQMIRKFVWTGGSTNPIAHLVNWECTST 138
            GRL L+ SV++SL  +  S  + P   I  ++ +   F+W+G   N     V W    T
Sbjct: 64  AGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCT 123

Query: 139 PTCYGGLGIGSFRQKNIALLTKWFWRFSKEETSLWRRLIVAIYGLDENGWSTKDPNREKS 198
           P   GGLGI S ++ N       FW  S   T                 W          
Sbjct: 124 PKDEGGLGIRSLKEANKGS----FWSISGNTTL--------------GSW---------- 183

Query: 199 HRLWAGILKHKEIFFNFSAFVLGEGTKIKFWKDKW 234
             +W  ILKH+ +   F    +  G+   FW D W
Sbjct: 184 --MWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 188

The following BLAST results are available for this feature:

BLAST of CsGy4G019275 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	6.9e-23	30.16	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of CsGy4G019275 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041036.1	1.42e-70	63.59	putative plant SNARE 11 [Cucumis melo var. makuwa]	[more]
CAN71190.1	1.46e-65	39.72	hypothetical protein VITISV_019118 [Vitis vinifera]	[more]
RVW22627.1	3.09e-65	40.07	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW83382.1	1.82e-63	41.79	putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Vitis vinife...	[more]
XP_010646830.1	2.40e-63	38.75	PREDICTED: uncharacterized protein LOC104878337, partial [Vitis vinifera]	[more]

BLAST of CsGy4G019275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TG65	6.86e-71	63.59	Putative plant SNARE 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A5AEG6	7.05e-66	39.72	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019118 PE=4 SV=1	[more]
A0A438CHF1	1.50e-65	40.07	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1084 ...	[more]
A0A438HFZ0	8.84e-64	41.79	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Vitis vini...	[more]
A0A438EZP2	1.29e-63	38.38	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_699 P...	[more]

BLAST of CsGy4G019275 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24255.1	2.5e-15	26.05	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 4..235
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 4..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G019275.1	CsGy4G019275.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0006810	transport
cellular_component	GO:0005622	intracellular anatomical structure
cellular_component	GO:0016020	membrane