CsGy4G018290 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G018290
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	50S ribosomal protein L18
Location	Gy14Chr4: 23795865 .. 23798218 (+)
RNA-Seq Expression	CsGy4G018290
Synteny	CsGy4G018290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCACTCTCTCTCGCTCCGGTTGTTTGTTGTGTAGGCGATAGGCGTGTTCTTCCGGCAACTTCACGCAGCCGTTTCCCATCAAGGTCTTCCCGGATCTCTTCTTTTGTCTTTCTCTTTCTTCTTATTTCTTCACTTCAATTAACTTCAGAATAGGGTAAGTTTAGTATTAATTAGGTCAATAAATCTGAGTTGAATTCGGATTTCTAATGAAATGGAGGGTTAGACTACTGTCATTTCTCGATGCATCTAAGATATCTTACATCTTGCTGATAAATTTTGTTTCTAATTTGTTTTCCTTTTCTTTTGAAACCGTTTATTGGGTTCAGTCTGTTGCTAGAATTGTTGATAGTGTAGGAATATAAAGGAGCATTGTTTGTTACCATGATTGGGAGTTTCACTTTTATCTTTCAGTTTGGTGGGATTATTTGAGGGGCTTGCTTAAAGTGGCTACCTCGATTCTATATCGTTGAATGTATGAGGGAAAATTCGATAATGCTCTCTTCAACATGGATTTATGTTTGTGAGATTTGAACCTGTTGGAAATCTCTTTGCAGTGGCCATAGTGGGTAGAGTTTCCTCAATTTGGCTCGAGTCATTACAAATTGAAACCCTGAGAAATCCGGCACAATATAAGCTCAAATTAGTCGAAACTGAATAAATTAACTCAAACCCATTGGTGTTGTTGAAAACTGGGCCTGTCTAATCCATGCTCACTGGATTTGTTGTCCATTTTCACTACTAATATTCATTTAGCGAAAAAAATCTGCAAAATAGAACGTATATCCTTGGGGCTTGGTCTTATGAATAATGCTATTTAAATTTTTTCAAGAACAATTACCCTCTATATTTGTTGCTACTAATAATAGTAGAGCATAGCCATTACCATTGCCATTACTTTGAAAGCTATGTTAGGAATATTAAACAATGATTTGTTTCGATGCCCTTTTGTCACTTATCATTTTTGTATTTATGTGTTAGGATTCACTTCACTTGATCAGAGGTGGTTTCAGTGTTCTTTCATTGTCTTTTTCTGTACGAAATTGGTTTTTTAGGGCCAAAATGATGAATGAAAATAGGGAAAACAATAGCATTTAAACAAATATATTAATGAATAATTAACCGATTGGTAGCTTAGCTTAAGCTTGAGAGGATTGAAGATTCTGATATTGACCCTTATTTGTGTTGTTTAGAGTATAATTGAATTGGAGTAGCCAAGGGAGATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGTATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGACCCTTTTTTTCTTTTTCCAATTTGCTTCATTTTGGCCCTCCTTGGAAATAGTTATCTGGTTTAATTGTTGGGCTTCATCAATCAATGCTTAATATTATCTGAATTTGTAATGAAATGTGATGAGATGCATTGTTGGACTTTTTGTCTGTCTTTATGGTCGTTTATAAATGAGTTTGAGATGAATATGAACAGTGAGCAGTGTTTTTAGTTTAAGAAAAATTATAAAACTTAAACTTGAGTTATTTCCAGCTGAAGCCAAGTCTCCAATCTTTTTCATAGATCAAAATTTTGCAATTGTTGCTACCATATCACCAAAAGATTTTTTCCAATGTTAACTCGCATAAATAACTTGTACACAAATGTCAATATTATTTTAACATTCTTAAACATAAAAGAATCCAATAAACTGAAGGCCAAACATGTAATTAATGATTAAAAAAAAACCCACCTAGTATGTGCAAAACTTCATAAAATACATATCATTTTAAACCAACAATGTCACACCCCACCCGAGCACCTTCTCTTACTTGAAAAGAGGTGTGAAGCTAGCAAACATCAGTATTTTGGCAGAGCGACTGAGGAAGGGCCGAAGACCCACAAGAAGGATCCATGAAGGTCAAACACCCACAAGAAGGATCCATGAATAGTTGGTAAAGTAGAAGAACCTTCTTGTGGAAGAAACTAGTTGAGAACATGTTGAAGACCTAGAAGCCTGGATGCAGAAG

mRNA sequence

CTCTCACTCTCTCTCGCTCCGGTTGTTTGTTGTGTAGGCGATAGGCGTGTTCTTCCGGCAACTTCACGCAGCCGTTTCCCATCAAGAGTATAATTGAATTGGAGTAGCCAAGGGAGATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGTATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGTATTTTGGCAGAGCGACTGAGGAAGGGCCGAAGACCCACAAGAAGGATCCATGAAGGTCAAACACCCACAAGAAGGATCCATGAATAGTTGGTAAAGTAGAAGAACCTTCTTGTGGAAGAAACTAGTTGAGAACATGTTGAAGACCTAGAAGCCTGGATGCAGAAG

Coding sequence (CDS)

ATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGTATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGTATTTTGGCAGAGCGACTGA

Protein sequence

MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAVFWQSD*

Homology

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BLAST of CsGy4G018290 vs. ExPASy Swiss-Prot
Match: A8IAP8 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K + AQ+I         AASS EK L+SS+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVRE 109
           G+ AV V  +    YHG+VKA+ +  RE
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGARE 115

[Close]

BLAST of CsGy4G018290 vs. ExPASy Swiss-Prot
Match: A7HM36 (50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rplR PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-08
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 26  TNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAV 85
           + K + AQ+I     I   AAS+ EKA++  ++ T ++ AA ++GKL+ ER L KGI  V
Sbjct: 36  SEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTWNITAAKEVGKLIAERALAKGIKEV 95

Query: 86  CVHLKREQRYHGKVKAVIDSVREA 110
            V  +   +YHG+VKA+ D+ REA
Sbjct: 96  -VFDRGGFKYHGRVKALADAAREA 118

[Close]

BLAST of CsGy4G018290 vs. ExPASy Swiss-Prot
Match: Q89A81 (50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=rplR PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-08
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K + AQ+I S+ A+V ++AS+ EK + + ++ T ++ A+  IGK + ER L+K
Sbjct: 30  LVVHRTSKHIYAQIIDSKNALVLTSASTVEKEILNLVKYTGNIHASICIGKKIAERALMK 89

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREA 110
           GI  V       Q YHG+VKA+ D+ RE+
Sbjct: 90  GIINVSFDRSGFQ-YHGRVKALADAARES 117

[Close]

BLAST of CsGy4G018290 vs. ExPASy Swiss-Prot
Match: P52863 (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-08
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI S  + V +AAS+ EKA++  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREA 110
           G+  V       Q YHG+V A+ +S REA
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREA 113

[Close]

BLAST of CsGy4G018290 vs. ExPASy Swiss-Prot
Match: A7IPQ4 (50S ribosomal protein L18 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) OX=78245 GN=rplR PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.7e-08
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T++ + AQVI        +AASS EK L++S+++  D  AA  IGKL+ ER L K
Sbjct: 29  LSVHRTSQHIYAQVIDDANGETLAAASSLEKDLRTSLKTGADTDAAKTIGKLVAERALAK 88

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVRE 109
           G+ AV V  +    +HG+VKA+ +  RE
Sbjct: 89  GVTAV-VFDRGAYIFHGRVKALAEGARE 115

[Close]

BLAST of CsGy4G018290 vs. NCBI nr
Match: XP_004144339.1 (uncharacterized protein LOC101221233 [Cucumis sativus] >KGN54729.1 hypothetical protein Csa_012115 [Cucumis sativus])

HSP 1 Score: 206 bits (524), Expect = 1.58e-66
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109

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BLAST of CsGy4G018290 vs. NCBI nr
Match: XP_008462699.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >KAA0046517.1 50S ribosomal protein L18 [Cucumis melo var. makuwa] >TYK28743.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (506), Expect = 8.77e-64
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. NCBI nr
Match: KAG6590442.1 (hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023978.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197 bits (502), Expect = 3.57e-63
Identity = 101/109 (92.66%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 197 bits (501), Expect = 5.07e-63
Identity = 101/109 (92.66%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. NCBI nr
Match: XP_022968817.1 (uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968820.1 uncharacterized protein LOC111467940 [Cucurbita maxima])

HSP 1 Score: 196 bits (498), Expect = 1.46e-62
Identity = 100/109 (91.74%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEK L+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. ExPASy TrEMBL
Match: A0A0A0L0Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 7.63e-67
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. ExPASy TrEMBL
Match: A0A5D3DYC1 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00840 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 4.25e-64
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. ExPASy TrEMBL
Match: A0A1S3CHJ0 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 4.25e-64
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. ExPASy TrEMBL
Match: A0A6J1HE21 (uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC111462025 PE=4 SV=1)

HSP 1 Score: 197 bits (501), Expect = 2.46e-63
Identity = 101/109 (92.66%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. ExPASy TrEMBL
Match: A0A6J1I0R8 (uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 7.04e-63
Identity = 100/109 (91.74%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEK L+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 109
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREA
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 164.1 bits (414), Expect = 6.8e-41
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPP ++PPRL  YLKPYVLKMHFTNKFV AQVIHS TA VA +ASSQEKAL+ +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREA 110
           RDVAAA+KIGK+LGERLL+K IPAV + +K+EQRYHGKVKAVIDSVREA
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREA 109

[Close]

BLAST of CsGy4G018290 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 32/98 (32.65%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 11  RLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIG 70
           R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +++++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVRE 109
           KL+ ER +   + AV    ++ +R  GK+  VID+++E
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKE 180

[Close]

BLAST of CsGy4G018290 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.1e-04
Identity = 27/89 (30.34%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 18  PYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERL 77
           P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R 
Sbjct: 197 PFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAVLAQRS 256

Query: 78  LLKGIPAVCVHLKREQRYHGKVKAVIDSV 107
           L   I  V    ++  +  GK++ V+ ++
Sbjct: 257 LEDDIHDVIYTPRKGDKIEGKLQVVLQAL 285

The following BLAST results are available for this feature:

BLAST of CsGy4G018290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8IAP8	1.9e-08	44.32	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
A7HM36	3.3e-08	41.67	50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
Q89A81	5.7e-08	40.45	50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia pistaciae (str...	[more]
P52863	5.7e-08	42.70	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]
A7IPQ4	9.7e-08	42.05	50S ribosomal protein L18 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / ...	[more]

BLAST of CsGy4G018290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144339.1	1.58e-66	100.00	uncharacterized protein LOC101221233 [Cucumis sativus] >KGN54729.1 hypothetical ...	[more]
XP_008462699.1	8.77e-64	96.33	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >KAA0046517.1 50S ribosomal ...	[more]
KAG6590442.1	3.57e-63	92.66	hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961444.1	5.07e-63	92.66	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]
XP_022968817.1	1.46e-62	91.74	uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharac...	[more]

BLAST of CsGy4G018290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Z6	7.63e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1	[more]
A0A5D3DYC1	4.25e-64	96.33	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CHJ0	4.25e-64	96.33	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1	[more]
A0A6J1HE21	2.46e-63	92.66	uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1I0R8	7.04e-63	91.74	uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940...	[more]

BLAST of CsGy4G018290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27820.1	6.8e-41	77.98	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	1.1e-09	32.65	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	5.1e-04	30.34	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 20..109 e-value: 4.7E-14 score: 52.7
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..110
None	No IPR available	GENE3D	3.30.420.100		coord: 11..111 e-value: 1.2E-21 score: 79.3
None	No IPR available	PANTHER	PTHR12899:SF6	OS03G0694800 PROTEIN	coord: 1..110
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 11..109 e-value: 2.48977E-27 score: 94.9143
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 13..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G018290.2	CsGy4G018290.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome