CsGy4G017605 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G017605
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 22720539 .. 22720867 (+)
RNA-Seq Expression	CsGy4G017605
Synteny	CsGy4G017605

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAACGTTGGCTTGATAAATTGTGGTGCATGGAGCGGAAGGTGACAAATTCTGATCTTCAATCGGCTTCATGCGCGACAGAGGAAAAATGGGACAAGACCAGCGACAATCGACGGCTGGTTAAGGAAGACTCGACGACAGCTACCGAAGACGAAGAAGGAGGCAGCGGTTCGGAAACGAAGAAAGGTATGGTCAAATCGGCGGCTAGGTTTTGTTTTCGTCGATGAAAAGAGGTAGTCGGCAGTGAGGGCGTGGCTAATGTCGTCGAACACAGCTAGAGGATGGCCATGAAGTTGGTCGGAAGAGGAAGAAGGGTGGCAGCTAG

mRNA sequence

ATGGACGAACGTTGGCTTGATAAATTGTGGTGCATGGAGCGGAAGGTGACAAATTCTGATCTTCAATCGGCTTCATGCGCGACAGAGGAAAAATGGGACAAGACCAGCGACAATCGACGGCTGGTTAAGGAAGACTCGACGACAGCTACCGAAGACGAAGAAGGAGGCAGCGGTTCGGAAACGAAGAAAGAGGATGGCCATGAAGTTGGTCGGAAGAGGAAGAAGGGTGGCAGCTAG

Coding sequence (CDS)

ATGGACGAACGTTGGCTTGATAAATTGTGGTGCATGGAGCGGAAGGTGACAAATTCTGATCTTCAATCGGCTTCATGCGCGACAGAGGAAAAATGGGACAAGACCAGCGACAATCGACGGCTGGTTAAGGAAGACTCGACGACAGCTACCGAAGACGAAGAAGGAGGCAGCGGTTCGGAAACGAAGAAAGAGGATGGCCATGAAGTTGGTCGGAAGAGGAAGAAGGGTGGCAGCTAG

Protein sequence

MDERWLDKLWCMERKVTNSDLQSASCATEEKWDKTSDNRRLVKEDSTTATEDEEGGSGSETKKEDGHEVGRKRKKGGS*

Homology

[Close]

BLAST of CsGy4G017605 vs. NCBI nr
Match: KAE8649650.1 (hypothetical protein Csa_012894 [Cucumis sativus])

HSP 1 Score: 153 bits (386), Expect = 1.27e-46
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MDERWLDKLWCMERKVTNSDLQSASCATEEKWDKTSDNRRLVKEDSTTATEDEEGGSGSE 60
          MDERWLDKLWCMERKVTNSDLQSASCATEEKWDKT DNRRLVKEDSTTATEDEEGGSGSE
Sbjct: 1  MDERWLDKLWCMERKVTNSDLQSASCATEEKWDKTGDNRRLVKEDSTTATEDEEGGSGSE 60

Query: 61 TKKEDGHEVGRKRKKGGS 78
          TKKEDGHEVGRKRKKGGS
Sbjct: 61 TKKEDGHEVGRKRKKGGS 78

[Close]

BLAST of CsGy4G017605 vs. ExPASy TrEMBL
Match: A0A0A0L3C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G411380 PE=4 SV=1)

HSP 1 Score: 125 bits (314), Expect = 5.63e-36
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MDERWLDKLWCMERKVTNSDLQSASCATEEKWDKTSDNRRLVKEDSTTATEDEEGGSGSE 60
          MDERWLDKLWCMERKVTNSDLQSASCATEEKWDKT DNRRLVKEDSTTATEDEEGGSGSE
Sbjct: 1  MDERWLDKLWCMERKVTNSDLQSASCATEEKWDKTGDNRRLVKEDSTTATEDEEGGSGSE 60

Query: 61 TKK 63
          TKK
Sbjct: 61 TKK 63

The following BLAST results are available for this feature:

BLAST of CsGy4G017605 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G017605 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649650.1	1.27e-46	98.72	hypothetical protein Csa_012894 [Cucumis sativus]	[more]

BLAST of CsGy4G017605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3C8	5.63e-36	98.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G411380 PE=4 SV=1	[more]

BLAST of CsGy4G017605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G017605.1	CsGy4G017605.1	mRNA