CsGy4G015060 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G015060
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	zinc finger CCCH domain-containing protein 25
Location	Gy14Chr4: 19788493 .. 19792003 (+)
RNA-Seq Expression	CsGy4G015060
Synteny	CsGy4G015060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTCGCTCGTTTCGCGTGCCCCTCCTTCTTCCTCATTCTCATTCACGATTTGGATGCTCTAGCTGCCGCCCTTAGTTGCTTCTTTTCTTCTTTTCCGTTTAGTTGCTCCGACGAACGCCAACGCACCGTCGCGTCTCCGATAGCCCAAGCCGCAGCGTCCATTTCTTCCTTGCCGTCCGACTGCCTCCCGTCGTGGAGCGCGTTTCACGTCTTCTTCAGATCTGAGCCGCGCGCGCGAGTTTTCTTTTCCAGTTGTTACGCGTTCCCCCTGCTTTCTCCCTCACCCAGTCGCGCACCTCCGTCCGAGCCACTCCTCTCTGTCCCGATCTACGCGCGTAGATTCCAGCTTTTCTAAGTCGCCGCTTCTGCCTTGCCACGAACTGTCGGTGTTTTGTTTGGTAAGAATGAAATTGTGGGTTTTGTTGTTTTCACGGCTATTGTTAAATGCTAATGTTGGTTTAATCATTTGGATCGATACTTATTCTTGAAGGTACCGTTTGAGGGTTGCCCCAGGGGAACAGGGATTTCGATTTTTAACTTAGCTATGAATCCCTTAACCCTAGTCAAACGCATCCAGAAAATAAATTCTCAAGAGGCAGCGCTTGGGATTTCTGAGGAAGCTTCATGGCACGCCAAATACAAAGATTCCGCCTACGTTTTCGTCGGAGGCATTCCTTATGATCTCACTGAGGGTGATCTCCTCGCCGTCTTCGCCCAGTAAGTTCACAGTCCTATCTATTTTCTCCCTCTTCTTTGTTTTGATTCTGCTCTCTTGCAGCTGTCTGTTCGTATTTACTTGAGAGACTGTGTAGTTGGATAAGTTTAGATTGAGATGTTGTGCTAGATTTGTGTGTTCGACATTGAAGTGAATTATCTCTCCCTTGGTCGTGTCTTGTTGTTCCAGTAGCTTCTAAATTGAACTTTGCTGGTAGCGACGAAAATTTATAGGGTCCTGTGAAAGTAGAAAATTTTGTTTGTAGGTCGTTGTAAATTGTTTTTAGTCGACAATCCTAGGTATTTAGACATTGGTAACTTAAGAGGTGGAGTTGATGTTTCAAGTTGTGAAAATAGACTAATTGAGCTCATAGTTGTTACAACAATAGATTTTGTTGTTTCTTGTAGTGCCAGCTTTTCCTATTTAGAATTCATCTTCATTGTGACCTCGGAGGGGCAATCGTATGAGAAGGGTTGGGATGTTTGGAGATACCTGTTTAGGTCCTAGGTTTAACTCTCAGGTGGAAAACTTGGCTTCGATTGGTAATATTTGGTTTTTTGTTTTTAGTTTTTGAAATTGAGCCTATAGACATCCCTCGCAATTGTATATTTCTCTCCTTGTTCTTTTGATGTGGTTAAGAATTCAATTCTTTAGCTTATAAAATATGCAAATCATGGTAAGAAATTGAGAGTATATAGACTTGGTTTTTGAAAACTAAAAACCAAATGGTTACCGAAAAGGGTCTAAGGTACTCAAAACCTTTGTTTTCTCTCTAGAGCTAGCCTTGGTGTGGGGAAGGCCTCTTGGCAACTAGCAGGGTTGGTTCTATACATTATGCATGCTAGAAGAGATCTTTGATATCTTGGTTTATGTGTGTGTAATCACAATTGTTTCAATTAATAAAAGAATCTTTTTTTTCTTCCCTGCCCTTCATCGTTTGTCTGTAAATGCATTTTTAAGGTTACATGCTCACTTGTGGGTCATTTGTGTTTTTTGAATTTTGAAATATATTTGAACGTACAGGTATGGAGAGATTGTAGATGTCAATCTTATCAGAGACAAGGGTACAGGAAAATCGAAAGGCTATGCCTTTGTTGCATATGAAGATCAGAGAAGTACAAATCTTGCTGTAGGTTGTCTCCTTCTCCTCTCTCTAAACCGTTCATTGTTTGTTATATGGGACTGAATGCGGATCTCTAAGTAATGTTGTTTGTCTCTTTCAGATAATTTGAATGGTGCACAGATTCTAGGTCGGATCGTTAGGGTTGATCATGTGTCTAAATATAAAAAGAAGGAAGAGGAAGATGAAGAAGAAGAACAAAAAAAGAGGGAAGCTCGGGGTGTTTGTCGTGCCTTTCAAAGGGGTGAATGTACTCGCGGAGCTGGATGCAAATTCTCTCATGATGAGCAGGTATTTGTGAGACCTTCTGTTATGTAAATTTTCTCTAGAAAGGATAGAAAGAGGTTTTGATCCCTGACAGTTTGTTAGTGGGGAAAAGGATGGTTTGATGTACAGTGTAAGAAGTTAGTTGTTTTTTGTAGGGGAAATATCTTGGCTTCACGGGATTTTTGTTTAGCTTTTGGCTAGTTATGTGTGAATTGAATAAAGAAGTTTGCAGACTATTTTTTCTTCTGCATGCTTCGATTAGAGTTTTAGCTTCACTTTAAGAAATTTGATGCATGGAAATTGTTCGTTTTTTAGAGAGCTGCAGACACGGGCTGGGGGGCGGCAGAAGATGCAGGTTCAAAATGGGGGCATGACAAGTTTGACAGTAGAAAAAATCACGACAAAGAATTACATGCAAAAGGAAGGAAAACTAGTGATAACTTAGGAAGACATCCAAGGGAGACTAGTGGAAGCCTGAGGCAGGAAAATAGACCAAGAGGTTGGGATGATAGTAAAGAATCAGAGCTCAAGTCGAGAGAGGATCATGGTGGGAAAGATGAGAAGAGATCGAGAAGATATGATCTTGATGGCAATTCTGATCCAAAGTCAGGAGATGATCAATATAAAGGGGAAGAGAAAAGATCTAGTAGGAACCACGATGATAACAGGAAAGACGAGAAAAGATCGAGAAAACATGACAATGATGATGAGATGAAATTAGAAGATGATCGCTATAGGAAGGAAGAAAATAGGTATAGAAGGAACCAAGACAATGAACTCCCACAGCATTCGAGAAGAGACTACAAAACAAGGGAAGAAGACAGATCATCAAAAAGGCACGGCGACAAAGAGTATCCGCCAAAGCTGAGGGAAGATGATAAAAGAAGGGAAAGAGATGTATCGGTAAGACATCGCTCAGAATCATATAGGAGGGAAAATCCAGATGAGAAAAGAGATTATCGTTCCTCTCATGGTGGTAGAGATTCTTCATCACATTCTCATAGAGAAAGAAACGAGGACCGTCGTAGATAAAATGAACGATTACACAGTGTATCATCATGGTTAGTCCTATCATGCTAGGTTCCAACACTATTGTAGAACATAACTTGTTTTATGGCCTGTTTTGTTTCCTTGTATTGTATTAGCAACTTTTTTTTGGCCCCACTACTTGTACTATCAAAGTAGGTAGTAACTCTTTAACGTGGAAATCTCATTGAGTAGAAACTTTTACATGCTAAGAAGAGTCGAGAATAAAATGACTAAAGGTCATGGATTTAATTCATGGTGACCACCTATGTAAGAATTAATTTTCTACAAGTTTCTCTGATGTCCAAGTGTTGTAGGAACAGGTGGGTGGTCCCATGAGATTAGTCGAGACACATGTAAGTGGCAACCTTATGGATATTCG

mRNA sequence

CCCTCGCTCGTTTCGCGTGCCCCTCCTTCTTCCTCATTCTCATTCACGATTTGGATGCTCTAGCTGCCGCCCTTAGTTGCTTCTTTTCTTCTTTTCCGTTTAGTTGCTCCGACGAACGCCAACGCACCGTCGCGTCTCCGATAGCCCAAGCCGCAGCGTCCATTTCTTCCTTGCCGTCCGACTGCCTCCCGTCGTGGAGCGCGTTTCACGTCTTCTTCAGATCTGAGCCGCGCGCGCGAGTTTTCTTTTCCAGTTGTTACGCGTTCCCCCTGCTTTCTCCCTCACCCAGTCGCGCACCTCCGTCCGAGCCACTCCTCTCTGTCCCGATCTACGCGCGTAGATTCCAGCTTTTCTAAGTCGCCGCTTCTGCCTTGCCACGAACTGTCGGTGTTTTGTTTGGTACCGTTTGAGGGTTGCCCCAGGGGAACAGGGATTTCGATTTTTAACTTAGCTATGAATCCCTTAACCCTAGTCAAACGCATCCAGAAAATAAATTCTCAAGAGGCAGCGCTTGGGATTTCTGAGGAAGCTTCATGGCACGCCAAATACAAAGATTCCGCCTACGTTTTCGTCGGAGGCATTCCTTATGATCTCACTGAGGGTGATCTCCTCGCCGTCTTCGCCCAGTATGGAGAGATTGTAGATGTCAATCTTATCAGAGACAAGGGTACAGGAAAATCGAAAGGCTATGCCTTTGTTGCATATGAAGATCAGAGAAGTACAAATCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGGATCGTTAGGGTTGATCATGTGTCTAAATATAAAAAGAAGGAAGAGGAAGATGAAGAAGAAGAACAAAAAAAGAGGGAAGCTCGGGGTGTTTGTCGTGCCTTTCAAAGGGGTGAATGTACTCGCGGAGCTGGATGCAAATTCTCTCATGATGAGCAGAGAGCTGCAGACACGGGCTGGGGGGCGGCAGAAGATGCAGGTTCAAAATGGGGGCATGACAAGTTTGACAGTAGAAAAAATCACGACAAAGAATTACATGCAAAAGGAAGGAAAACTAGTGATAACTTAGGAAGACATCCAAGGGAGACTAGTGGAAGCCTGAGGCAGGAAAATAGACCAAGAGGTTGGGATGATAGTAAAGAATCAGAGCTCAAGTCGAGAGAGGATCATGGTGGGAAAGATGAGAAGAGATCGAGAAGATATGATCTTGATGGCAATTCTGATCCAAAGTCAGGAGATGATCAATATAAAGGGGAAGAGAAAAGATCTAGTAGGAACCACGATGATAACAGGAAAGACGAGAAAAGATCGAGAAAACATGACAATGATGATGAGATGAAATTAGAAGATGATCGCTATAGGAAGGAAGAAAATAGGTATAGAAGGAACCAAGACAATGAACTCCCACAGCATTCGAGAAGAGACTACAAAACAAGGGAAGAAGACAGATCATCAAAAAGGCACGGCGACAAAGAGTATCCGCCAAAGCTGAGGGAAGATGATAAAAGAAGGGAAAGAGATGTATCGGTAAGACATCGCTCAGAATCATATAGGAGGGAAAATCCAGATGAGAAAAGAGATTATCGTTCCTCTCATGGTGGTAGAGATTCTTCATCACATTCTCATAGAGAAAGAAACGAGGACCGTCGTAGATAAAATGAACGATTACACAGTGTATCATCATGGTTAGTCCTATCATGCTAGGTTCCAACACTATTGTAGAACATAACTTGTTTTATGGCCTGTTTTGTTTCCTTGTATTGTATTAGCAACTTTTTTTTGGCCCCACTACTTGTACTATCAAAGTAGGTAGTAACTCTTTAACGTGGAAATCTCATTGAGTAGAAACTTTTACATGCTAAGAAGAGTCGAGAATAAAATGACTAAAGGTCATGGATTTAATTCATGGTGACCACCTATGTAAGAATTAATTTTCTACAAGTTTCTCTGATGTCCAAGTGTTGTAGGAACAGGTGGGTGGTCCCATGAGATTAGTCGAGACACATGTAAGTGGCAACCTTATGGATATTCG

Coding sequence (CDS)

ATGAATCCCTTAACCCTAGTCAAACGCATCCAGAAAATAAATTCTCAAGAGGCAGCGCTTGGGATTTCTGAGGAAGCTTCATGGCACGCCAAATACAAAGATTCCGCCTACGTTTTCGTCGGAGGCATTCCTTATGATCTCACTGAGGGTGATCTCCTCGCCGTCTTCGCCCAGTATGGAGAGATTGTAGATGTCAATCTTATCAGAGACAAGGGTACAGGAAAATCGAAAGGCTATGCCTTTGTTGCATATGAAGATCAGAGAAGTACAAATCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGGATCGTTAGGGTTGATCATGTGTCTAAATATAAAAAGAAGGAAGAGGAAGATGAAGAAGAAGAACAAAAAAAGAGGGAAGCTCGGGGTGTTTGTCGTGCCTTTCAAAGGGGTGAATGTACTCGCGGAGCTGGATGCAAATTCTCTCATGATGAGCAGAGAGCTGCAGACACGGGCTGGGGGGCGGCAGAAGATGCAGGTTCAAAATGGGGGCATGACAAGTTTGACAGTAGAAAAAATCACGACAAAGAATTACATGCAAAAGGAAGGAAAACTAGTGATAACTTAGGAAGACATCCAAGGGAGACTAGTGGAAGCCTGAGGCAGGAAAATAGACCAAGAGGTTGGGATGATAGTAAAGAATCAGAGCTCAAGTCGAGAGAGGATCATGGTGGGAAAGATGAGAAGAGATCGAGAAGATATGATCTTGATGGCAATTCTGATCCAAAGTCAGGAGATGATCAATATAAAGGGGAAGAGAAAAGATCTAGTAGGAACCACGATGATAACAGGAAAGACGAGAAAAGATCGAGAAAACATGACAATGATGATGAGATGAAATTAGAAGATGATCGCTATAGGAAGGAAGAAAATAGGTATAGAAGGAACCAAGACAATGAACTCCCACAGCATTCGAGAAGAGACTACAAAACAAGGGAAGAAGACAGATCATCAAAAAGGCACGGCGACAAAGAGTATCCGCCAAAGCTGAGGGAAGATGATAAAAGAAGGGAAAGAGATGTATCGGTAAGACATCGCTCAGAATCATATAGGAGGGAAAATCCAGATGAGAAAAGAGATTATCGTTCCTCTCATGGTGGTAGAGATTCTTCATCACATTCTCATAGAGAAAGAAACGAGGACCGTCGTAGATAA

Protein sequence

MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEEEDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFDSRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEKRSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKEENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSESYRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR*

Homology

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BLAST of CsGy4G015060 vs. ExPASy Swiss-Prot
Match: Q10B98 (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0826400 PE=2 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 8.8e-77
Identity = 176/319 (55.17%), Postives = 222/319 (69.59%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VKR Q IN +EA LGI E+ SWHAK+KDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           E+VDVNL+RDKGTGKSKG+AF+AYEDQRST LAVDNLNGA++LGRIVRVDHVSKYKKKEE
Sbjct: 61  EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDK-F 180
           EDEEE QKKREARGVC AFQ+GEC RGA C++SHDEQR A+TGWG+ E++ ++W HD+  
Sbjct: 121 EDEEELQKKREARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHH 180

Query: 181 DSRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDE 240
           +   +H K   + G +   +  +   +++G   Q +R   + D ++S L+   D G KD 
Sbjct: 181 EPPMSHKKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAYKD-RDSRLR-HSDRGSKDH 240

Query: 241 KRSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRK 300
            R R    D + +   GD Q   +  R ++  D+  +  +   KHD  D+ +   D    
Sbjct: 241 DRYRH---DRSPERSRGDRQRNND--RYAQGRDEKSERYRSEVKHDEGDQKRSRRDTDSS 300

Query: 301 EENRYRRNQDNELPQHSRR 319
                R N+D+E  + SRR
Sbjct: 301 GHYERRGNEDSERYRKSRR 312

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BLAST of CsGy4G015060 vs. ExPASy Swiss-Prot
Match: Q9SD61 (Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=At3g47120 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.5e-71
Identity = 185/351 (52.71%), Postives = 230/351 (65.53%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKG+AF+AYEDQRST LAVDNLNGA +LGR ++VDH   YKK EE
Sbjct: 61  EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEE  ++ REARGVCRAFQRGECTRG  CKFSHDE+RAA+TGWG  ED  SKW HDK  
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNR 180

Query: 181 SRKNHDKELH----AKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELK------- 240
             +   +        +G     +       T+G   +E+R   WD  K +  K       
Sbjct: 181 EGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKKGGTSFG 240

Query: 241 SREDHGGKDEKRSRRYDLDGNSD---PKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDN 300
           +R D     E++S R   DG++    PK  +   + +    SR+  D  K++KRS ++DN
Sbjct: 241 NRGDFKPDVEEKSYRGRGDGDASYGRPKERERVDREDMGPRSRDAYD-MKEQKRSGRYDN 300

Query: 301 DDEMKLEDDRYRKEENRYRRNQDNELPQ-HSRRDYKTREE-DRSSKRHGDK 336
               +  D+     E++  R QD E  +  SRRD   REE DR S R  D+
Sbjct: 301 AYSRRHNDEIDYVREDKGSRAQDWEKRKAESRRDRNDREEKDRDSLRREDR 350

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BLAST of CsGy4G015060 vs. ExPASy Swiss-Prot
Match: Q8R0F5 (RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.4e-34
Identity = 120/339 (35.40%), Postives = 179/339 (52.80%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++E+ SWH++YK SA++FVGG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIV++NL+RDK TGKSKG+ F+ YEDQRST LAVDN NG +I GR +RVDHVS Y+  +E
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAPQE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
            ++ ++        V R  Q   C  G     S   + + D      EDA     H K  
Sbjct: 121 SEDVDD--------VTRELQEKGC--GVKTPPSSPPEVSED------EDAKLTKKHKKDK 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
             K   K+   +G+  ++      R  +   +++ R      SK SE   + +H  ++ K
Sbjct: 181 KEKKKRKKEKTEGQAQAEQ-PSCSRSATVKEKKDERASRKHSSKTSERAQKSEH--RESK 240

Query: 241 RSRRYDLDGNSD--PKSGDDQYKGEEKRSSRNHD--DNRKDEKRSRKHDNDDEMKLEDDR 300
           +S     DG S    ++ D + K  +++    H     R+ E++SR+ +          R
Sbjct: 241 KSHSGSPDGRSSYHARAEDPECKARKEKPKHEHKSASRREAEEKSRERERGRSSGTHSGR 300

Query: 301 YR--KEENRYRRNQDNELPQHSRRDYKTREEDRSSKRHG 334
           +R   +   +R    +  P  S R  K R        HG
Sbjct: 301 HRGHSDGRSHRSRSRSRSPDKSHRHKKYRHSRERDSYHG 320

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BLAST of CsGy4G015060 vs. ExPASy Swiss-Prot
Match: Q9Y388 (RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 3.9e-32
Identity = 117/334 (35.03%), Postives = 171/334 (51.20%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++++ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIV++NL+RDK TGKSKG+ F+ YEDQRST LAVDN NG +I GR +RVDHVS Y+  ++
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKD 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
            +E ++        V R  Q   C  GA        + + D           K    K  
Sbjct: 121 SEEIDD--------VTRQLQEKGC--GARTPSPSLSESSEDEKPTKKHKKDKKEKKKKKK 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
            ++  D+E+ A+   +S      PR  +   + +  P+          +  E   G+   
Sbjct: 181 EKEKADREVQAEQPSSSS-----PRRKTVKEKDDTGPKKHSSKNSERAQKSEPREGQKLP 240

Query: 241 RSRRYDLDGNSD--PKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYR 300
           +SR     G  D   +   ++ K E K SSR      K   R R   +D      + R  
Sbjct: 241 KSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAREEKTRIRDRGRSSDAHSSWYNGRSE 300

Query: 301 KEENRYRRNQDNELPQHSR-RDYKTREEDRSSKR 332
               R R    ++  +H R R  + RE    S R
Sbjct: 301 GRSYRSRSRSRDKSHRHKRARRSRERESSNPSDR 319

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BLAST of CsGy4G015060 vs. ExPASy Swiss-Prot
Match: B0BN49 (RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.9e-32
Identity = 120/352 (34.09%), Postives = 185/352 (52.56%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++E+ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIV++NL+RDK TGKSKG+ F+ YEDQRST LAVDN NG +I GR +RVDHV+ Y+  +E
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDA--GSKWGHDK 180
            ++ ++        V R  Q   C  GA    S   + + D      EDA    K   DK
Sbjct: 121 SEDVDD--------VTRELQEKGC--GAKTPPSSPPEVSED------EDAKVTKKPKKDK 180

Query: 181 FDSRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKD 240
            + +K  +KE             +  R     L   +R +     KE++ +S + H  K 
Sbjct: 181 KEKKKKKEKE-------------KTERPVQAELPSCSRSK---TVKETDEQSAKKHSSKP 240

Query: 241 EKRSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYR 300
            +R+++ +        SG     G      R  +   + +K   KH++    + E +   
Sbjct: 241 SERAQKSECRERKKSHSGSPD--GRTSCRGRAEEPEWEAKKEKHKHEHKPSSRREGEEKS 300

Query: 301 KEENRYRRNQDNELPQHSRRDYKT-REEDRSSKRHGDKEYPPKLREDDKRRE 350
           ++++R R +  +    H   + ++ R   RS  R  D+ +  K       RE
Sbjct: 301 RDKDRGRSSGTHSSRHHGHSEGRSHRSRSRSRSRSPDRSHRHKKHRYSHERE 318

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BLAST of CsGy4G015060 vs. NCBI nr
Match: XP_004147921.1 (zinc finger CCCH domain-containing protein 25 [Cucumis sativus] >KGN54364.1 hypothetical protein Csa_018037 [Cucumis sativus])

HSP 1 Score: 744 bits (1920), Expect = 5.12e-270
Identity = 394/395 (99.75%), Postives = 394/395 (99.75%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDA SKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFD 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
           SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK
Sbjct: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240

Query: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300
           RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE
Sbjct: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360
           ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360

Query: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395
           YRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR
Sbjct: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395

[Close]

BLAST of CsGy4G015060 vs. NCBI nr
Match: XP_008449221.1 (PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo] >KAA0045039.1 zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 684 bits (1764), Expect = 3.01e-246
Identity = 367/392 (93.62%), Postives = 373/392 (95.15%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH SKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEEE+QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWG AEDA SKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
            RKN +KEL AKGRK SDNLGRHPRETSGSLRQENR +G DDSKESELKSREDHG KDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300
           RSRRYDLDGN DPKSGDD YK EEKRS RNHDDNRKDEKRSRKHD+DDEMK EDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360
           ENRYRRNQDNELPQHSRRDY TREEDRSSKRHGD EYPPKLREDDKRRERD+SVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERNED 392
           +RRENPDEKRDY SS GGRDSSSHSHRERNED
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNED 392

[Close]

BLAST of CsGy4G015060 vs. NCBI nr
Match: TYK15418.1 (zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 683 bits (1763), Expect = 4.61e-246
Identity = 366/397 (92.19%), Postives = 380/397 (95.72%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRI+RVDHVSKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDA SKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
           SR NHDKEL AKGRK SD+LGRHPRETSGSLRQENRP+GWDDSK SELK REDH  +DEK
Sbjct: 181 SRTNHDKELRAKGRKNSDDLGRHPRETSGSLRQENRPKGWDDSKGSELKPREDHWRRDEK 240

Query: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNH--DDNRKDEKRSRKHDNDDEMKLEDDRYR 300
           RSRRYDLDGN DPK GDD+YK EEKRS+RNH  DDNRKDEKRSRKHDND+EMKLEDDRYR
Sbjct: 241 RSRRYDLDGNPDPKLGDDRYKREEKRSTRNHEYDDNRKDEKRSRKHDNDEEMKLEDDRYR 300

Query: 301 KEENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRS 360
           KEENRYRRNQDNELPQHSRR+Y TREEDRSSKRHGD+EY PKL EDDKRRERD+SVRHRS
Sbjct: 301 KEENRYRRNQDNELPQHSRRNYNTREEDRSSKRHGDEEYQPKLGEDDKRRERDISVRHRS 360

Query: 361 ESYRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395
           ES+RRENP+EKRD+RSSHGGRDSSSHSH ERNEDRRR
Sbjct: 361 ESHRRENPNEKRDFRSSHGGRDSSSHSHTERNEDRRR 397

[Close]

BLAST of CsGy4G015060 vs. NCBI nr
Match: XP_008449231.1 (PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X2 [Cucumis melo])

HSP 1 Score: 680 bits (1755), Expect = 6.32e-245
Identity = 365/390 (93.59%), Postives = 371/390 (95.13%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH SKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEEE+QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWG AEDA SKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
            RKN +KEL AKGRK SDNLGRHPRETSGSLRQENR +G DDSKESELKSREDHG KDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300
           RSRRYDLDGN DPKSGDD YK EEKRS RNHDDNRKDEKRSRKHD+DDEMK EDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360
           ENRYRRNQDNELPQHSRRDY TREEDRSSKRHGD EYPPKLREDDKRRERD+SVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERN 390
           +RRENPDEKRDY SS GGRDSSSHSHRERN
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERN 390

[Close]

BLAST of CsGy4G015060 vs. NCBI nr
Match: TYJ96288.1 (zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 653 bits (1684), Expect = 5.82e-233
Identity = 367/461 (79.61%), Postives = 373/461 (80.91%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ-- 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQ  
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQGN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  HMRRVGMFEDTSLGPRFISQVENSAPIDVIKNSILSLKKYANHGTQNLCFLAGASLGVGK 120

Query: 121 -------YGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH 180
                  YGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH
Sbjct: 121 ASWQLAGYGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH 180

Query: 181 VSKYKKKEEEDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAG 240
            SKYKKKEEEDEEE+QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWG AEDA 
Sbjct: 181 ASKYKKKEEEDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDAS 240

Query: 241 SKWGHDKFDSRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSR 300
           SKWGHDKFD RKN +KEL AKGRK SDNLGRHPRETSGSLRQENR +G DDSKESELKSR
Sbjct: 241 SKWGHDKFDGRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSR 300

Query: 301 EDHGGKDEKRSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMK 360
           EDHG KDEKRSRRYDLDGN DPKSGDD YK EEKRS RNHDDNRKDEKRSRKHD+DDEMK
Sbjct: 301 EDHGEKDEKRSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMK 360

Query: 361 LEDDRYRKEENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERD 392
            EDDRYRKEENRYRRNQDNELPQHSRRDY TREEDRSSKRHGD EYPPKLREDDKRRERD
Sbjct: 361 SEDDRYRKEENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERD 420

[Close]

BLAST of CsGy4G015060 vs. ExPASy TrEMBL
Match: A0A0A0KZW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1)

HSP 1 Score: 744 bits (1920), Expect = 2.48e-270
Identity = 394/395 (99.75%), Postives = 394/395 (99.75%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDA SKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFD 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
           SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK
Sbjct: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240

Query: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300
           RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE
Sbjct: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360
           ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360

Query: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395
           YRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR
Sbjct: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395

[Close]

BLAST of CsGy4G015060 vs. ExPASy TrEMBL
Match: A0A5A7TUW9 (Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G00260 PE=4 SV=1)

HSP 1 Score: 684 bits (1764), Expect = 1.46e-246
Identity = 367/392 (93.62%), Postives = 373/392 (95.15%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH SKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEEE+QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWG AEDA SKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
            RKN +KEL AKGRK SDNLGRHPRETSGSLRQENR +G DDSKESELKSREDHG KDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300
           RSRRYDLDGN DPKSGDD YK EEKRS RNHDDNRKDEKRSRKHD+DDEMK EDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360
           ENRYRRNQDNELPQHSRRDY TREEDRSSKRHGD EYPPKLREDDKRRERD+SVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERNED 392
           +RRENPDEKRDY SS GGRDSSSHSHRERNED
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNED 392

[Close]

BLAST of CsGy4G015060 vs. ExPASy TrEMBL
Match: A0A1S3BLJ3 (zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491164 PE=4 SV=1)

HSP 1 Score: 684 bits (1764), Expect = 1.46e-246
Identity = 367/392 (93.62%), Postives = 373/392 (95.15%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH SKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEEE+QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWG AEDA SKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
            RKN +KEL AKGRK SDNLGRHPRETSGSLRQENR +G DDSKESELKSREDHG KDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300
           RSRRYDLDGN DPKSGDD YK EEKRS RNHDDNRKDEKRSRKHD+DDEMK EDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360
           ENRYRRNQDNELPQHSRRDY TREEDRSSKRHGD EYPPKLREDDKRRERD+SVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERNED 392
           +RRENPDEKRDY SS GGRDSSSHSHRERNED
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERNED 392

[Close]

BLAST of CsGy4G015060 vs. ExPASy TrEMBL
Match: A0A5D3CVY9 (Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00620 PE=4 SV=1)

HSP 1 Score: 683 bits (1763), Expect = 2.23e-246
Identity = 366/397 (92.19%), Postives = 380/397 (95.72%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRI+RVDHVSKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDA SKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
           SR NHDKEL AKGRK SD+LGRHPRETSGSLRQENRP+GWDDSK SELK REDH  +DEK
Sbjct: 181 SRTNHDKELRAKGRKNSDDLGRHPRETSGSLRQENRPKGWDDSKGSELKPREDHWRRDEK 240

Query: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNH--DDNRKDEKRSRKHDNDDEMKLEDDRYR 300
           RSRRYDLDGN DPK GDD+YK EEKRS+RNH  DDNRKDEKRSRKHDND+EMKLEDDRYR
Sbjct: 241 RSRRYDLDGNPDPKLGDDRYKREEKRSTRNHEYDDNRKDEKRSRKHDNDEEMKLEDDRYR 300

Query: 301 KEENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRS 360
           KEENRYRRNQDNELPQHSRR+Y TREEDRSSKRHGD+EY PKL EDDKRRERD+SVRHRS
Sbjct: 301 KEENRYRRNQDNELPQHSRRNYNTREEDRSSKRHGDEEYQPKLGEDDKRRERDISVRHRS 360

Query: 361 ESYRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395
           ES+RRENP+EKRD+RSSHGGRDSSSHSH ERNEDRRR
Sbjct: 361 ESHRRENPNEKRDFRSSHGGRDSSSHSHTERNEDRRR 397

[Close]

BLAST of CsGy4G015060 vs. ExPASy TrEMBL
Match: A0A1S3BLK5 (zinc finger CCCH domain-containing protein 25-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491164 PE=4 SV=1)

HSP 1 Score: 680 bits (1755), Expect = 3.06e-245
Identity = 365/390 (93.59%), Postives = 371/390 (95.13%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDH SKYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEEE+QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWG AEDA SKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240
            RKN +KEL AKGRK SDNLGRHPRETSGSLRQENR +G DDSKESELKSREDHG KDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKE 300
           RSRRYDLDGN DPKSGDD YK EEKRS RNHDDNRKDEKRSRKHD+DDEMK EDDRYRKE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSES 360
           ENRYRRNQDNELPQHSRRDY TREEDRSSKRHGD EYPPKLREDDKRRERD+SVRHRSES
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSES 360

Query: 361 YRRENPDEKRDYRSSHGGRDSSSHSHRERN 390
           +RRENPDEKRDY SS GGRDSSSHSHRERN
Sbjct: 361 HRRENPDEKRDYWSSQGGRDSSSHSHRERN 390

[Close]

BLAST of CsGy4G015060 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 270.8 bits (691), Expect = 1.8e-72
Identity = 185/351 (52.71%), Postives = 230/351 (65.53%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120
           EIVDVNLIRDKGTGKSKG+AF+AYEDQRST LAVDNLNGA +LGR ++VDH   YKK EE
Sbjct: 61  EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120

Query: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDAGSKWGHDKFD 180
           EDEE  ++ REARGVCRAFQRGECTRG  CKFSHDE+RAA+TGWG  ED  SKW HDK  
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNR 180

Query: 181 SRKNHDKELH----AKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELK------- 240
             +   +        +G     +       T+G   +E+R   WD  K +  K       
Sbjct: 181 EGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKKGGTSFG 240

Query: 241 SREDHGGKDEKRSRRYDLDGNSD---PKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDN 300
           +R D     E++S R   DG++    PK  +   + +    SR+  D  K++KRS ++DN
Sbjct: 241 NRGDFKPDVEEKSYRGRGDGDASYGRPKERERVDREDMGPRSRDAYD-MKEQKRSGRYDN 300

Query: 301 DDEMKLEDDRYRKEENRYRRNQDNELPQ-HSRRDYKTREE-DRSSKRHGDK 336
               +  D+     E++  R QD E  +  SRRD   REE DR S R  D+
Sbjct: 301 AYSRRHNDEIDYVREDKGSRAQDWEKRKAESRRDRNDREEKDRDSLRREDR 350

The following BLAST results are available for this feature:

BLAST of CsGy4G015060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10B98	8.8e-77	55.17	Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SD61	2.5e-71	52.71	Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8R0F5	5.4e-34	35.40	RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=...	[more]
Q9Y388	3.9e-32	35.03	RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2	[more]
B0BN49	3.9e-32	34.09	RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=...	[more]

BLAST of CsGy4G015060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147921.1	5.12e-270	99.75	zinc finger CCCH domain-containing protein 25 [Cucumis sativus] >KGN54364.1 hypo...	[more]
XP_008449221.1	3.01e-246	93.62	PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumi...	[more]
TYK15418.1	4.61e-246	92.19	zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var....	[more]
XP_008449231.1	6.32e-245	93.59	PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X2 [Cucumi...	[more]
TYJ96288.1	5.82e-233	79.61	zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var....	[more]

BLAST of CsGy4G015060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZW7	2.48e-270	99.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1	[more]
A0A5A7TUW9	1.46e-246	93.62	Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo va...	[more]
A0A1S3BLJ3	1.46e-246	93.62	zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo OX...	[more]
A0A5D3CVY9	2.23e-246	92.19	Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo va...	[more]
A0A1S3BLK5	3.06e-245	93.59	zinc finger CCCH domain-containing protein 25-like isoform X2 OS=Cucumis melo OX...	[more]

BLAST of CsGy4G015060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47120.1	1.8e-72	52.71	RNA recognition motif (RRM)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 115..135
None	No IPR available	GENE3D	4.10.1000.10		coord: 118..205 e-value: 1.6E-7 score: 33.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..395
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..395
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..310
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..310
None	No IPR available	CDD	cd12411	RRM_ist3_like	coord: 27..113 e-value: 5.18102E-57 score: 179.757
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 132..156 e-value: 0.001 score: 28.3
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 135..155 e-value: 7.8E-5 score: 22.5
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 130..157 score: 14.802481
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 37..110 e-value: 3.3E-26 score: 103.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..106 e-value: 3.4E-21 score: 74.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 36..114 score: 19.877102
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..112 e-value: 1.5E-27 score: 98.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..115
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 133..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G015060.1	CsGy4G015060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding