CsGy4G014255 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G014255
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Cyclin-dependent protein kinase inhibitor SMR2
Location	Gy14Chr4: 19115806 .. 19116033 (+)
RNA-Seq Expression	CsGy4G014255
Synteny	CsGy4G014255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCACCGGAAATGGAGAAGACCGACAAGAACGGTGATGAGTGTCTAACTCCAAAGAGCTGTGCATGTAGAATTCCGAAGGTTTTCAAATGCCCTCCACCGCCCAAGAAGAAATCGTTTACCGGCCGGAAGCTGGCCCCTCCGACAAGGGGTTATTTCCAGCCTCCCGATCTCGATACTCTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTACTTAG

mRNA sequence

ATGTCGCCACCGGAAATGGAGAAGACCGACAAGAACGGTGATGAGTGTCTAACTCCAAAGAGCTGTGCATGTAGAATTCCGAAGGTTTTCAAATGCCCTCCACCGCCCAAGAAGAAATCGTTTACCGGCCGGAAGCTGGCCCCTCCGACAAGGGGTTATTTCCAGCCTCCCGATCTCGATACTCTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTACTTAG

Coding sequence (CDS)

ATGTCGCCACCGGAAATGGAGAAGACCGACAAGAACGGTGATGAGTGTCTAACTCCAAAGAGCTGTGCATGTAGAATTCCGAAGGTTTTCAAATGCCCTCCACCGCCCAAGAAGAAATCGTTTACCGGCCGGAAGCTGGCCCCTCCGACAAGGGGTTATTTCCAGCCTCCCGATCTCGATACTCTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTACTTAG

Protein sequence

MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPPSSRWEACT*

Homology

[Close]

BLAST of CsGy4G014255 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.2e-12
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 8  KTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPP 67
          KT+   + C TP+S   RIP    CPPPP+KK    RK  PP  GYFQPPDL+TLF   P
Sbjct: 7  KTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLFYAQP 66

Query: 68 SSRWEAC 75
            R EAC
Sbjct: 67 --RREAC 71

[Close]

BLAST of CsGy4G014255 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 16 CLTPKSCACRIPKVFKCPPPPKKKSFT---GRKLAPPTRGYFQPPDLDTLFSMPPSSR 71
          C TP    CRIP    CPPP ++K      G+K  PP +GYFQPPDLD  FS+  +S+
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVAASQ 79

[Close]

BLAST of CsGy4G014255 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.5e-04
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 18  TPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLF 64
           TP + + RIP V  CPP PKK+  T  K++   R +F PPDL+T+F
Sbjct: 57  TPTADSVRIPTVIPCPPAPKKRKLT-LKVSYGPREFFSPPDLETVF 101

[Close]

BLAST of CsGy4G014255 vs. NCBI nr
Match: KGN54563.2 (hypothetical protein Csa_017876 [Cucumis sativus])

HSP 1 Score: 161 bits (408), Expect = 5.52e-50
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60
          MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD
Sbjct: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60

Query: 61 TLFSMPPSSRWEA 73
          TLFSMPPSSRWEA
Sbjct: 61 TLFSMPPSSRWEA 73

[Close]

BLAST of CsGy4G014255 vs. NCBI nr
Match: KAA0032664.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYK23544.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 1.59e-41
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60
          MS PEMEKTDKNGDECLTPKS ACRIP   KCPPPPKKK+ TGRKLAPPT GYFQPPDLD
Sbjct: 1  MSLPEMEKTDKNGDECLTPKSYACRIPTFSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLD 60

Query: 61 TLFSMPPSSRWEAC 74
           LFS+PPSSRWEAC
Sbjct: 61 ALFSIPPSSRWEAC 74

[Close]

BLAST of CsGy4G014255 vs. NCBI nr
Match: KAG6603646.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033830.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117 bits (292), Expect = 2.21e-32
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 6  MEKTDK----NGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 65
          MEKTD     NG+ECLTP++CA RIP   KCPPPPKKK+ TGRK  PPT GYF PPDLD 
Sbjct: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60

Query: 66 LFSMPPSSRWEAC 74
          LFSMPPSSRWEAC
Sbjct: 61 LFSMPPSSRWEAC 73

[Close]

BLAST of CsGy4G014255 vs. NCBI nr
Match: XP_002531566.1 (cyclin-dependent protein kinase inhibitor SMR4 [Ricinus communis] >EEF30832.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 88.6 bits (218), Expect = 4.13e-21
Identity = 39/59 (66.10%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 13 GDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPPSSRW 71
          G+EC TP+S  CRIP VF CPPPP+KKS TG K  PP  GYFQPPDLD L S+PP   W
Sbjct: 14 GEECRTPRSRECRIPLVFVCPPPPRKKSATGTKRDPPKNGYFQPPDLDLLLSVPPRKAW 72

[Close]

BLAST of CsGy4G014255 vs. NCBI nr
Match: XP_030511104.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cannabis sativa])

HSP 1 Score: 88.2 bits (217), Expect = 6.03e-21
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 5  EMEKTDKN---GDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 64
          E E++D N   G++C TPK   CRIP+ F CPPPPKKKS +G K  PP  GYF PPDLD+
Sbjct: 3  EYERSDTNTMEGEDCTTPKRRECRIPETFVCPPPPKKKSMSGTKRQPPKNGYFHPPDLDS 62

Query: 65 LFSMPPSSRWEAC 74
          LF +P  SR +AC
Sbjct: 63 LFVIP--SRGQAC 73

[Close]

BLAST of CsGy4G014255 vs. ExPASy TrEMBL
Match: A0A0A0KXI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296170 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 1.59e-52
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60
          MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD
Sbjct: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60

Query: 61 TLFSMPPSSRWEACT 75
          TLFSMPPSSRWEACT
Sbjct: 61 TLFSMPPSSRWEACT 75

[Close]

BLAST of CsGy4G014255 vs. ExPASy TrEMBL
Match: A0A5A7SNA9 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00480 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 7.68e-42
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60
          MS PEMEKTDKNGDECLTPKS ACRIP   KCPPPPKKK+ TGRKLAPPT GYFQPPDLD
Sbjct: 1  MSLPEMEKTDKNGDECLTPKSYACRIPTFSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLD 60

Query: 61 TLFSMPPSSRWEAC 74
           LFS+PPSSRWEAC
Sbjct: 61 ALFSIPPSSRWEAC 74

[Close]

BLAST of CsGy4G014255 vs. ExPASy TrEMBL
Match: B9SZZ7 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0452270 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.00e-21
Identity = 39/59 (66.10%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 13 GDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPPSSRW 71
          G+EC TP+S  CRIP VF CPPPP+KKS TG K  PP  GYFQPPDLD L S+PP   W
Sbjct: 14 GEECRTPRSRECRIPLVFVCPPPPRKKSATGTKRDPPKNGYFQPPDLDLLLSVPPRKAW 72

[Close]

BLAST of CsGy4G014255 vs. ExPASy TrEMBL
Match: A0A7J6H051 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011058 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.13e-20
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 5  EMEKTDK-NGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLF 64
          E E++D   G++C TPK   CRIP+ F CPPPPKKKS +G K  PP  GYF PPDLD+LF
Sbjct: 3  EYERSDTMEGEDCTTPKRRECRIPETFVCPPPPKKKSMSGTKRQPPKNGYFHPPDLDSLF 62

Query: 65 SMPPSSRWEAC 74
           +P  SR +AC
Sbjct: 63 VIP--SRGQAC 71

[Close]

BLAST of CsGy4G014255 vs. ExPASy TrEMBL
Match: A0A803QBN7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.63e-20
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 5   EMEKTDKN---GDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 64
           E E++D N   G++C TPK   CRIP+ F CPPPPKKKS +G K  PP  GYF PPDLD+
Sbjct: 109 EYERSDTNTMEGEDCTTPKRRECRIPETFVCPPPPKKKSMSGTKRQPPKNGYFHPPDLDS 168

Query: 65  LFSMPPSSRWEAC 74
           LF +P  SR +AC
Sbjct: 169 LFVIP--SRGQAC 179

[Close]

BLAST of CsGy4G014255 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-13
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 8  KTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPP 67
          KT+   + C TP+S   RIP    CPPPP+KK    RK  PP  GYFQPPDL+TLF   P
Sbjct: 7  KTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLFYAQP 66

Query: 68 SSRWEAC 75
            R EAC
Sbjct: 67 --RREAC 71

[Close]

BLAST of CsGy4G014255 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 3.9e-05
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 18  TPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLF 64
           TP + + RIP V  CPP PKK+  T  K++   R +F PPDL+T+F
Sbjct: 57  TPTADSVRIPTVIPCPPAPKKRKLT-LKVSYGPREFFSPPDLETVF 101

[Close]

BLAST of CsGy4G014255 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 1   MSPPEMEKTDKNGDEC-LTPKSCACRIPKVFKCPPPPKKKSFTGR-KLAPPTRGYFQPPD 60
           +SP       +  D+C  TP + + RIP+V  CP  PKK+  + +      TR YF PPD
Sbjct: 40  LSPGVTVTETEEQDQCPTTPTAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPD 99

Query: 61  LDTLF 64
           L+T+F
Sbjct: 100 LETVF 104

The following BLAST results are available for this feature:

BLAST of CsGy4G014255 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	7.2e-12	53.73	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	1.1e-07	48.28	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	5.5e-04	47.83	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CsGy4G014255 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54563.2	5.52e-50	100.00	hypothetical protein Csa_017876 [Cucumis sativus]	[more]
KAA0032664.1	1.59e-41	86.49	cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYK23...	[more]
KAG6603646.1	2.21e-32	73.97	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
XP_002531566.1	4.13e-21	66.10	cyclin-dependent protein kinase inhibitor SMR4 [Ricinus communis] >EEF30832.1 co...	[more]
XP_030511104.1	6.03e-21	57.53	cyclin-dependent protein kinase inhibitor SMR4 [Cannabis sativa]	[more]

BLAST of CsGy4G014255 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXI9	1.59e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296170 PE=4 SV=1	[more]
A0A5A7SNA9	7.68e-42	86.49	Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=11...	[more]
B9SZZ7	2.00e-21	66.10	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0452270 PE=4 SV=1	[more]
A0A7J6H051	1.13e-20	57.75	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011058 PE=4 SV=1	[more]
A0A803QBN7	4.63e-20	57.53	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CsGy4G014255 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	5.1e-13	53.73	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G60783.1	3.9e-05	47.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10690.1	1.1e-04	38.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..75
None	No IPR available	PANTHER	PTHR33142:SF53	SUBFAMILY NOT NAMED	coord: 1..69
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G014255.1	CsGy4G014255.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0006620	posttranslational protein targeting to endoplasmic reticulum membrane
biological_process	GO:0032875	regulation of DNA endoreduplication
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0072380	TRC complex
molecular_function	GO:0060090	molecular adaptor activity