CsGy4G014070 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G014070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Very-long-chain enoyl-CoA reductase
Location	Gy14Chr4: 18968396 .. 18973139 (+)
RNA-Seq Expression	CsGy4G014070
Synteny	CsGy4G014070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGGTGAGTAGCTTCTTGTTTAATCTCGTTTTCGTTTGGTTCTACTTTAATCGCAGAGTTTAGGTAAGCTGCAGTGTAGTTGAAAACTTGAAAGGTACTTTTGTGCGATGGAGAGTTGAAAATTGTAATCTCACTGTTCTCTAGATTTTCTATACCGATGTTCTTATGCATTGTGTTATGTAGGCTACGGTGAGCGACCTGCATGGGGCTATTCTTAGTGACGTTGTCTTTGTTTCTGGATGATTAAGCTGTAGGTTTAGTGTTTTCTACTAGGATCATGGATTTTATTGAGATTTGAATCACCTGCTTGCTCTGTTCTTAATGCTTAATGAAAAAACCATGATATCTCAGTTGGAGTGATTACAAAAATTTTAGAGTGCACCAAGGTCTTAATGATAAGTATAATAAAATCCCCACATATCTCTATAATGGTAAAATATTGTTCACTTTGGGCATAAACCCTTGGTTTTGCTTATGAAACCACCTCAACAAATCTCATACTGATGGAGATAATGGTTGTGGGACTTTGTTTGCAGTCCTAATAATCCTCCCCTGGAACAAAGTACCATTATGAACCTTCCCACATTCGTCTACCCCTGATCACCTACGAGAGTTTGCTCTTATCTACCTAGTTTCAAAGCCAAGTACAGTACAACCATGAATCATTTATGTGAAACACAATTTGTATCGACCACATAGTCACACCCTCAATCTCCTCATATAGAACAAATATCAACTCCTCTAATAGAGTTATTACTTGCTTGTTGCCCAAATTTGATCAAATCTAGGGATTTGTCCACAAGACTCACTATTACCCACACAACTATGTTTAAACATGGCTCTGATAGCAATTGATAAGGACAATGGAACCTCCACATATCTAAAAGGCTTCATAGCAATGGAGATAATTGTTGTCACTTGTATACTTACAATCACTTCCTGGATTTTGTTTATGCACCCAAAAGTTAATATTTACAGTTACGCCTTTGATGAGATAATAAAGGAGTTCAGATATAACTTATGTGCATGTATTTTGCACTAGATTTGGCTTTCTATTTGTAATCTAGCATTCAGAAACGTATTTGTCTTATTATGATTGAGTCAAAGCAATGTTACATATTTATATAGAGAATAAACTAAACCCTAGAGACTATGTAAAATTACAATAAAGGACATATGTATATATATATATATCATAACACTCCCCCTCAAGCTGGAGCAAATATGTCGATCATGCCCAGCTTGTTGCACAGATAGCTTATCTTTGTTCCATTTAAAGCTTTAGTTAGAATATCTCCCAATTGTTCTCTGGTCTTCACATATCTTGTGGACACCAACCCATCTTGGATTTTCTCACGAATGAAGTGACAATCCACCTCAATATGTTTAGTTCGTTCATGAAATACTGGATTAGATGCAATATGAAGTGCAGCTTGATTATCACACCATAATTTAGCTGGCACGGTAATACTGAAGCCTATCTCAGATAATAGTTGGTGAATCCATACTATTTCACACACAGATTGTGCCATAGCTCTATATTCTGACTCAGCACTCGAACGAGAAACAACATTTTGTTTCTTACTCTTCCATGAAACTAAGTTTCCACCTACAAAAACACAATATCCAGAAGTCGATCTCCTATCCTCACGAGACCTCGCCCAATCAGCATCAGAAAAACATTCAACTCTCGTATGTCCATGATCTTTGTATAGGATCCCACGTCCAGGAGCAGCTCTGATACCAAATTATGTAAAGATCCTGAGAGATATAGGAGATTAGTTGGGAAGTTGAACTACTTAACAGTGACTCGACTAGACATTGCATATTCTGTAAGTGTTGTAAGTCAATTCATGTCTTCCCCTACAGTGGATCATTGGGTCTAAAAGCTGCTCCTGGACGTGGGATCCTATACAAAGATCATGGACATACGAGAGTTGAATGTTTTTCTAATGCTGACTGGGCGGGGTCGACAAATGGTCACCGGAAGGTAACCCAAACTTCAAACCTAATGGAGGGCTCCGATACCATGTAATCTAGAATTCAGAAACGTATCTGTCTTATTATGATTGAGTCAAAGCAATGTTACATATTTATATAGAGAATAAACTAAACACTAGAGACTATGTAAAATTACAATAAAGGACATATGTATATATATATATATATCATAACACTATTGTCTTTCTGGATTACTAAAGCATGAATTGATTCTATACTTGCTGGCAATTCCTTGTGAATTTTGCTATAGTTTTCATTAGTTTTTTCCTTTTGCACCATGGATAAAGATTATGTCTCTCAAACTCAAAATCACCGATTATCTTCTCTAATATTCTCCTATCCAACAGGAAGAAAATACTATCCTTCTAGACAGCGTCTTACCTTACCTGCAAAACCAGGGTCAAAAGAGAGGCATGTTGTTCTTATCTCAAGCAAGAAGCTCCAAGATTACTGCAATGGAAACTTGGAGTACCTGACCATCACATTTAAGGACCTTGGTCCCCAGGTTTCTTTTAGAACACTTTTCTTGTTGGAGTATTTGGGGCCACTCCTTATCTATCCCATGTTTTACCACTTTCCAGTCTATAAGTTCTTCGGCTATAAAGATGAGCGTCATATCTTCCCTGTCCAGACTTATGCCATGTACTATTGGTCCCTTTATTACTCTAAGTGGATCATGGAGACCTTATTTGTTCATAGGTTTAGCCATGAAACTTCATGCTTGTCTACTGTCTTCCGTTGCTGCTAATACTACTGGAGCTTTGGAGCTCTGATGAGCTACTATGTAAACCACCCACTTTACATCCCCGTGACTGACATCCAAATGAAAATTGGTTTTGGATTTGAATTGCTATGTCAATTATATATCCAACCAATATTGTCATCTCATATTGAAGAATCTTAGAGATCCTAGTGGAAAGGGAGGCTACAAAATTCCACGTGGATTCCTTTTCAATATTGTAACTTGTGCTAACTACACAACTGAAATTTATCAATGGCTTGGATTCAATATTTCAACACAAACTCTTGCTGGTTATATTTTTGTAATGGCGGCTACCTACATTATGACTAAATGGGCAATTGCGAAACACCGCCACTTGGAAAATATGATTACTATTTGCTTCCTCGTTCATGTAAAATGCACTCCCCTCGTTGATATATTGGAAGGCTTTTACTGTACATTTCTTGCTTTTCATAAGTTTTATGCTTAATTTAGTACCCTTGGTTTTCAATTGATGAAGTCTAGATCAAGTTTATAGGGTGATATGTGCTGTCTAATTCCTCATAACTAACAAACTATTCCATCATGATCAAATTGCTCTTTTTCTTATCATGATCTGAGCTTTTTAATCAATTTAGTATGCTTTTCGTAATTCAAATGTCTAAAATAAATTTTGTCTAGGAAAAGGGTTACTGCTTCATCTACAGTTTTTTGTTCTTTCTATATATTCTAATGTTGACTTGGTGTCTTTTGCAGCTTCTTGATGGGAAGGAAGGGAGGCCAAAATATCCAAGAAGATGGGTGATTCTACCTCCATTTTTCTGAAAACAATAAAAGCCTTCCAGACAACTATGGCTATTGTGCTACTTTAATTAGTATGTTTTTTCCCCATTATAAAACTTGATATAAGTTTTTATAAGGCTTGACCATGAACTCTCATTTCAAAGAGACCTTTTGAGGAGTCTCTAGAGTCTACGCTTTACCTGTTCATTTGAAAGCAATAATTAGATGCAAGAAATTAAATCATTTGACCACTTGAGTAGGCACTGTTAGTCCAATACAACAAAGTTGATTGTTTTGCTCATTCTACCATTTGCACTCAGTCAAATTGTATCGATCTACAATTTGAGCAATGTTTGAAGGAGAATTTGGGAATAATATCAATGAGATAATTTCAGGAGACAACGATATTATTTTATTTCCTTCGAATTCCCTGATTGTATTAAAAAAAAAACAGAACACCAGATGGCTTAATGACCGACTCTGGTTAAAACTTGTTATCCTGCCTAGGATATTTCAAGTATTGCTTGAATTCTTCAATAGTTACCAGCATTCTAGTATATATACAAAAAAAATAAGGTAATAAGGTTGAATATTAAAATCTGTTGGCAAGTATATGGTACTTTTACTTTACTTTCTGAAATTCATCTTTGATGTATGTAATAATCTACAAAAGCAGCAGCTTTAGCCTTTGAAACAAACCTCCTGGAAGCTTGCATTTTAGCCCTGTATGTGTTGAGAACTCTATCCTTGCACTGAGTTTCACTAGAAGAGTTCTATGATATGGCAAAACTATAAGCAAATTCCCAATCCTAAGGAGAACACCGTGGAAATTTGTTTGGTCACCAGTCATTATACATACTATGTAGTTGGCCAGAAATTAGTCTGTCGTCCAATCCTACGTGGCAGTCCAAAATTTTGATAGGCCCTTATTTCACCTCCTAGCCCAGCAGTCACAATGACCAATCCCC

mRNA sequence

ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGCTTCTTGATGGGAAGGAAGGGAGGCCAAAATATCCAAGAAGATGGGTGATTCTACCTCCATTTTTCTGAAAACAATAAAAGCCTTCCAGACAACTATGGCTATTGTGCTACTTTAATTACCCAGCAGTCACAATGACCAATCCCC

Coding sequence (CDS)

ATGGAATCTCTCACACCTTCATTTCCCTCTCTTTTTTATACTCTTAAATCCCTAGCTGCTGCTGCAGCAACAACAATCAGTACTGCTGTTTACTCTCCGTCTACACTTTGTTCAAGCTATGAAGGTCTGAGAGTATTCATCATCAGTGGCCTTCGAATCAATGATTCGCTTCTTGATGGGAAGGAAGGGAGGCCAAAATATCCAAGAAGATGGGTGATTCTACCTCCATTTTTCTGA

Protein sequence

MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDGKEGRPKYPRRWVILPPFF*

Homology

[Close]

BLAST of CsGy4G014070 vs. ExPASy Swiss-Prot
Match: Q9M2U2 (Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana OX=3702 GN=ECR PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.0e-05
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPF 78
           + DGK+G+PKYPRRWVILPPF
Sbjct: 289 IFDGKDGKPKYPRRWVILPPF 309

[Close]

BLAST of CsGy4G014070 vs. NCBI nr
Match: KGN54247.1 (hypothetical protein Csa_017878 [Cucumis sativus])

HSP 1 Score: 156 bits (395), Expect = 5.37e-48
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60
          MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG
Sbjct: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60

Query: 61 KEGRPKYPRRWVILPPFF 78
          KEGRPKYPRRWVILPPFF
Sbjct: 61 KEGRPKYPRRWVILPPFF 78

[Close]

BLAST of CsGy4G014070 vs. NCBI nr
Match: TYK23520.1 (hypothetical protein E5676_scaffold500G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 2.61e-19
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1  MESLTPSFPSLFYTLKSLAAAAA-TTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 56
          MESLTPSFPSLF TL+SLAAAAA TTISTAVYS STLC S+EGLRVFI  GLRI+DS
Sbjct: 1  MESLTPSFPSLFPTLRSLAAAAAATTISTAVYSSSTLCPSHEGLRVFITGGLRIDDS 57

[Close]

BLAST of CsGy4G014070 vs. NCBI nr
Match: XP_038877634.1 (very-long-chain enoyl-CoA reductase-like [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 1.57e-06
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 55  DSLLDGKEGRPKYPRRWVILPPFF 78
           + L DGKEGRPKYPRRWVILPPFF
Sbjct: 287 EKLFDGKEGRPKYPRRWVILPPFF 310

[Close]

BLAST of CsGy4G014070 vs. NCBI nr
Match: PKI46564.1 (hypothetical protein CRG98_032906 [Punica granatum])

HSP 1 Score: 53.9 bits (128), Expect = 4.00e-06
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPFF 78
           L DGKEGRPKYPRRWVILPPFF
Sbjct: 280 LFDGKEGRPKYPRRWVILPPFF 301

[Close]

BLAST of CsGy4G014070 vs. NCBI nr
Match: MCI11519.1 (trans-23-enoyl-CoA reductase [Trifolium medium])

HSP 1 Score: 49.7 bits (117), Expect = 4.06e-06
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 0


Query: 57 LLDGKEGRPKYPRRWVILPPF 77
          + DGKEGRP+YPRRWVILPPF
Sbjct: 1  MFDGKEGRPRYPRRWVILPPF 21

[Close]

BLAST of CsGy4G014070 vs. ExPASy TrEMBL
Match: A0A0A0L0X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295510 PE=4 SV=1)

HSP 1 Score: 156 bits (395), Expect = 2.60e-48
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60
          MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG
Sbjct: 1  MESLTPSFPSLFYTLKSLAAAAATTISTAVYSPSTLCSSYEGLRVFIISGLRINDSLLDG 60

Query: 61 KEGRPKYPRRWVILPPFF 78
          KEGRPKYPRRWVILPPFF
Sbjct: 61 KEGRPKYPRRWVILPPFF 78

[Close]

BLAST of CsGy4G014070 vs. ExPASy TrEMBL
Match: A0A5D3DJF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00240 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.26e-19
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1  MESLTPSFPSLFYTLKSLAAAAA-TTISTAVYSPSTLCSSYEGLRVFIISGLRINDS 56
          MESLTPSFPSLF TL+SLAAAAA TTISTAVYS STLC S+EGLRVFI  GLRI+DS
Sbjct: 1  MESLTPSFPSLFPTLRSLAAAAAATTISTAVYSSSTLCPSHEGLRVFITGGLRIDDS 57

[Close]

BLAST of CsGy4G014070 vs. ExPASy TrEMBL
Match: A0A2I0IRE1 (S5A_REDUCTASE domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_032906 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.94e-06
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPFF 78
           L DGKEGRPKYPRRWVILPPFF
Sbjct: 280 LFDGKEGRPKYPRRWVILPPFF 301

[Close]

BLAST of CsGy4G014070 vs. ExPASy TrEMBL
Match: A0A392PJ49 (Trans-23-enoyl-CoA reductase OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.97e-06
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 0


Query: 57 LLDGKEGRPKYPRRWVILPPF 77
          + DGKEGRP+YPRRWVILPPF
Sbjct: 1  MFDGKEGRPRYPRRWVILPPF 21

[Close]

BLAST of CsGy4G014070 vs. ExPASy TrEMBL
Match: A0A2U1KPX7 (3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA578200 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.97e-06
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPFF 78
           L DGKEGRPKYPRRWVILPPFF
Sbjct: 289 LFDGKEGRPKYPRRWVILPPFF 310

[Close]

BLAST of CsGy4G014070 vs. TAIR 10
Match: AT3G55360.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein )

HSP 1 Score: 48.5 bits (114), Expect = 2.8e-06
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 0


Query: 57  LLDGKEGRPKYPRRWVILPPF 78
           + DGK+G+PKYPRRWVILPPF
Sbjct: 289 IFDGKDGKPKYPRRWVILPPF 309

The following BLAST results are available for this feature:

BLAST of CsGy4G014070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2U2	4.0e-05	80.95	Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana OX=3702 GN=ECR PE=1 ...	[more]

BLAST of CsGy4G014070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54247.1	5.37e-48	100.00	hypothetical protein Csa_017878 [Cucumis sativus]	[more]
TYK23520.1	2.61e-19	84.21	hypothetical protein E5676_scaffold500G00240 [Cucumis melo var. makuwa]	[more]
XP_038877634.1	1.57e-06	87.50	very-long-chain enoyl-CoA reductase-like [Benincasa hispida]	[more]
PKI46564.1	4.00e-06	95.45	hypothetical protein CRG98_032906 [Punica granatum]	[more]
MCI11519.1	4.06e-06	85.71	trans-23-enoyl-CoA reductase [Trifolium medium]	[more]

BLAST of CsGy4G014070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0X2	2.60e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295510 PE=4 SV=1	[more]
A0A5D3DJF8	1.26e-19	84.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2I0IRE1	1.94e-06	95.45	S5A_REDUCTASE domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_032...	[more]
A0A392PJ49	1.97e-06	85.71	Trans-23-enoyl-CoA reductase OS=Trifolium medium OX=97028 PE=4 SV=1	[more]
A0A2U1KPX7	1.97e-06	95.45	3-oxo-5-alpha-steroid 4-dehydrogenase, Ubiquitin-related domain protein OS=Artem...	[more]

BLAST of CsGy4G014070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55360.1	2.8e-06	80.95	3-oxo-5-alpha-steroid 4-dehydrogenase family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G014070.1	CsGy4G014070.1	mRNA