CsGy4G011125 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G011125
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 10429098 .. 10429918 (-)
RNA-Seq Expression	CsGy4G011125
Synteny	CsGy4G011125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTGTATATAGCTATATGTTTTTTGAAAAAATTCCCCAAAACGTGTATAAGTATAAAGTATGTGTCAAAAACCATGTGTGTTGAAGGCGTTGGATTGGCGTGTTTGAAGGAAGAAATTAGACTCCTAAAAAACCAAAGCACTAACGCCCACAGGAAACTCCCAATTTCCCTCTTTTTCACTTCTTAGTTTTACCTACAAAAACCTTCATTCCCATTCTCAAACCAAATTTAATTCACAATCAATTATGGCTCCCACTGCAGCAATGCTCATTCTCTCCCACACCCACCACCATTCTTCTCTCCCCATCTCCGGCCACCCACCGCCACCAACGCCGCCCCCTTCCTCCACCTGCAGGACACTAATTTCATCTGCCTTTGCCAAACTCAAAATTCTCCTAATTCCTACTCCCACTTCTTCTTACTCTTCTAATTCTCAATCTTCTAAAGTCAGCATTTTAGAAGTATTTGAATCTGCCAACTTCTCGGGTTGGTAATTAATCAATTCAGATTTATCATTTTTCTTTCTTATTTGTAGCTGCTAATTTTGTACAAATTTAAGTATAGGTATTGATTTCATTTTGTTTTGGCTTTAATTTATGTAATGTAATGTAATGGTGCATTTATGTGAATAAAAAGAAACAATGTTATTGCTCCCATCTATAGAATAAGGTATTAATAACACAATACGTGCAACTAAATTAGGAACAGAAATAAAATGATAAAAAACTGTGTTTTATTATTATTATTAATTATGTGTTTAGATGTATTCATCCAAAATCAAATAAATAGAACATTTCATTCAATGAATTTGATTGTCCCA

mRNA sequence

GTGTGTATATAGCTATATGTTTTTTGAAAAAATTCCCCAAAACGTGTATAAGTATAAAGTATGTGTCAAAAACCATGTGTGTTGAAGGCGTTGGATTGGCGTGTTTGAAGGAAGAAATTAGACTCCTAAAAAACCAAAGCACTAACGCCCACAGGAAACTCCCAATTTCCCTCTTTTTCACTTCTTAGTTTTACCTACAAAAACCTTCATTCCCATTCTCAAACCAAATTTAATTCACAATCAATTATGGCTCCCACTGCAGCAATGCTCATTCTCTCCCACACCCACCACCATTCTTCTCTCCCCATCTCCGGCCACCCACCGCCACCAACGCCGCCCCCTTCCTCCACCTGCAGGACACTAATTTCATCTGCCTTTGCCAAACTCAAAATTCTCCTAATTCCTACTCCCACTTCTTCTTACTCTTCTAATTCTCAATCTTCTAAAGTCAGCATTTTAGAAGTATTTGAATCTGCCAACTTCTCGGGTTGGTAATTAATCAATTCAGATTTATCATTTTTCTTTCTTATTTGTAGCTGCTAATTTTGTACAAATTTAAGTATAGGTATTGATTTCATTTTGTTTTGGCTTTAATTTATGTAATGTAATGTAATGGTGCATTTATGTGAATAAAAAGAAACAATGTTATTGCTCCCATCTATAGAATAAGGTATTAATAACACAATACGTGCAACTAAATTAGGAACAGAAATAAAATGATAAAAAACTGTGTTTTATTATTATTATTAATTATGTGTTTAGATGTATTCATCCAAAATCAAATAAATAGAACATTTCATTCAATGAATTTGATTGTCCCA

Coding sequence (CDS)

ATGGCTCCCACTGCAGCAATGCTCATTCTCTCCCACACCCACCACCATTCTTCTCTCCCCATCTCCGGCCACCCACCGCCACCAACGCCGCCCCCTTCCTCCACCTGCAGGACACTAATTTCATCTGCCTTTGCCAAACTCAAAATTCTCCTAATTCCTACTCCCACTTCTTCTTACTCTTCTAATTCTCAATCTTCTAAAGTCAGCATTTTAGAAGTATTTGAATCTGCCAACTTCTCGGGTTGGTAA

Protein sequence

MAPTAAMLILSHTHHHSSLPISGHPPPPTPPPSSTCRTLISSAFAKLKILLIPTPTSSYSSNSQSSKVSILEVFESANFSGW*

Homology

[Close]

BLAST of CsGy4G011125 vs. NCBI nr
Match: KGN53876.1 (hypothetical protein Csa_011816 [Cucumis sativus])

HSP 1 Score: 162 bits (410), Expect = 3.67e-50
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MAPTAAMLILSHTHHHSSLPISGHPPPPTPPPSSTCRTLISSAFAKLKILLIPTPTSSYS 60
          MAPTAAMLILSHTHHHSSLPISGHPPPPTPPPSSTCRTLISSAFAKLKILLIPTPTSSYS
Sbjct: 1  MAPTAAMLILSHTHHHSSLPISGHPPPPTPPPSSTCRTLISSAFAKLKILLIPTPTSSYS 60

Query: 61 SNSQSSKVSILEVFESANFSGW 82
          SNSQSSKVSILEVFESANFSGW
Sbjct: 61 SNSQSSKVSILEVFESANFSGW 82

[Close]

BLAST of CsGy4G011125 vs. ExPASy TrEMBL
Match: A0A0A0L161 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179115 PE=4 SV=1)

HSP 1 Score: 162 bits (410), Expect = 1.78e-50
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MAPTAAMLILSHTHHHSSLPISGHPPPPTPPPSSTCRTLISSAFAKLKILLIPTPTSSYS 60
          MAPTAAMLILSHTHHHSSLPISGHPPPPTPPPSSTCRTLISSAFAKLKILLIPTPTSSYS
Sbjct: 1  MAPTAAMLILSHTHHHSSLPISGHPPPPTPPPSSTCRTLISSAFAKLKILLIPTPTSSYS 60

Query: 61 SNSQSSKVSILEVFESANFSGW 82
          SNSQSSKVSILEVFESANFSGW
Sbjct: 61 SNSQSSKVSILEVFESANFSGW 82

The following BLAST results are available for this feature:

BLAST of CsGy4G011125 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G011125 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53876.1	3.67e-50	100.00	hypothetical protein Csa_011816 [Cucumis sativus]	[more]

BLAST of CsGy4G011125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L161	1.78e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179115 PE=4 SV=1	[more]

BLAST of CsGy4G011125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G011125.1	CsGy4G011125.1	mRNA