CsGy4G010565 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G010565
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionATP-dependent DNA helicase
LocationGy14Chr4: 9685210 .. 9685542 (-)
RNA-Seq ExpressionCsGy4G010565
SyntenyCsGy4G010565
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACAGGATCAGCTAAAAATGCATGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCAGAAGAAGTCCGTCTATCATTGGGGGGCAAATATAGAGAAGGAAATGGACAAGGTACTACAACGAGAAAACTCTATACAGAACTAAACCAACGGCGACCATTGGCTCTAGCAAAGTTCGAAGCTTGGAAAATGTGGCACGAAGATGGTCTCTCAATACAGAGAATTGCTGTAAGTATATTTTTTTTTCAACTTTTCGAAGTTTTTGAGAAAAAAAGGCTTATGAAGACGAACATAGCAACATGGCAATTTGTAAGCCTATTCACACATTGA

mRNA sequence

ATGGTACAGGATCAGCTAAAAATGCATGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCAGAAGAAGTCCGTCTATCATTGGGGGGCAAATATAGAGAAGGAAATGGACAAGGTACTACAACGAGAAAACTCTATACAGAACTAAACCAACGGCGACCATTGGCTCTAGCAAAGTTCGAAGCTTGGAAAATGTGGCACGAAGATGGTCTCTCAATACAGAGAATTGCTGTAAGTATATTTTTTTTTCAACTTTTCGAAGTTTTTGAGAAAAAAAGGCTTATGAAGACGAACATAGCAACATGGCAATTTGTAAGCCTATTCACACATTGA

Coding sequence (CDS)

ATGGTACAGGATCAGCTAAAAATGCATGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCAGAAGAAGTCCGTCTATCATTGGGGGGCAAATATAGAGAAGGAAATGGACAAGGTACTACAACGAGAAAACTCTATACAGAACTAAACCAACGGCGACCATTGGCTCTAGCAAAGTTCGAAGCTTGGAAAATGTGGCACGAAGATGGTCTCTCAATACAGAGAATTGCTGTAAGTATATTTTTTTTTCAACTTTTCGAAGTTTTTGAGAAAAAAAGGCTTATGAAGACGAACATAGCAACATGGCAATTTGTAAGCCTATTCACACATTGA

Protein sequence

MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKFEAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH*
Homology
[Close]
BLAST of CsGy4G010565 vs. NCBI nr
Match: KGN53924.2 (hypothetical protein Csa_019143 [Cucumis sativus])

HSP 1 Score: 222 bits (565), Expect = 6.28e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 60
           MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF
Sbjct: 1   MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 60

Query: 61  EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 110
           EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH
Sbjct: 61  EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 110

[Close]
BLAST of CsGy4G010565 vs. NCBI nr
Match: XP_011653463.2 (uncharacterized protein LOC101222028 [Cucumis sativus] >KGN53928.2 hypothetical protein Csa_019113 [Cucumis sativus])

HSP 1 Score: 125 bits (315), Expect = 8.33e-31
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYRE-GNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVKRLS++V LSL G+YRE GNGQGTT RKLYTE NQRRPLA AKFE
Sbjct: 598 QHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRKLYTEPNQRRPLAPAKFE 657

Query: 63  AWKMWHEDGLSIQRIA 77
           AWKMWHEDGLSIQ+IA
Sbjct: 658 AWKMWHEDGLSIQKIA 673

[Close]
BLAST of CsGy4G010565 vs. NCBI nr
Match: KAA0041766.1 (ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (314), Expect = 1.08e-30
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYRE-GNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YRE GNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 77
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

[Close]
BLAST of CsGy4G010565 vs. NCBI nr
Match: XP_008442016.1 (PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo])

HSP 1 Score: 125 bits (314), Expect = 1.09e-30
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYRE-GNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YRE GNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 77
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

[Close]
BLAST of CsGy4G010565 vs. NCBI nr
Match: XP_008442015.1 (PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X1 [Cucumis melo])

HSP 1 Score: 125 bits (314), Expect = 1.14e-30
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYRE-GNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YRE GNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 598 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 657

Query: 63  AWKMWHEDGLSIQRIA 77
           AWKMWHEDGLSIQ+IA
Sbjct: 658 AWKMWHEDGLSIQKIA 673

[Close]
BLAST of CsGy4G010565 vs. ExPASy TrEMBL
Match: A0A0A0KWB6 (ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188670 PE=3 SV=1)

HSP 1 Score: 222 bits (565), Expect = 5.85e-68
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 60
           MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF
Sbjct: 421 MVQDQLKMHGDLILEAVKRLSEEVRLSLGGKYREGNGQGTTTRKLYTELNQRRPLALAKF 480

Query: 61  EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 110
           EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH
Sbjct: 481 EAWKMWHEDGLSIQRIAVSIFFFQLFEVFEKKRLMKTNIATWQFVSLFTH 530

[Close]
BLAST of CsGy4G010565 vs. ExPASy TrEMBL
Match: A0A0A0L1A4 (ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188732 PE=3 SV=1)

HSP 1 Score: 125 bits (315), Expect = 3.29e-31
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYRE-GNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVKRLS++V LSL G+YRE GNGQGTT RKLYTE NQRRPLA AKFE
Sbjct: 371 QHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRKLYTEPNQRRPLAPAKFE 430

Query: 63  AWKMWHEDGLSIQRIA 77
           AWKMWHEDGLSIQ+IA
Sbjct: 431 AWKMWHEDGLSIQKIA 446

[Close]
BLAST of CsGy4G010565 vs. ExPASy TrEMBL
Match: A0A5A7TI77 (ATP-dependent DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001150 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 5.24e-31
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYRE-GNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YRE GNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 77
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

[Close]
BLAST of CsGy4G010565 vs. ExPASy TrEMBL
Match: A0A1S3B4R4 (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 5.29e-31
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYRE-GNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YRE GNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 474 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 533

Query: 63  AWKMWHEDGLSIQRIA 77
           AWKMWHEDGLSIQ+IA
Sbjct: 534 AWKMWHEDGLSIQKIA 549

[Close]
BLAST of CsGy4G010565 vs. ExPASy TrEMBL
Match: A0A1S3B4Q2 (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 5.50e-31
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 3   QDQLKMHGDLILEAVKRLSEEVRLSLGGKYRE-GNGQGTTTRKLYTELNQRRPLALAKFE 62
           Q  LKMHGDLILEAVK LS++V LSL G+YRE GNGQGTTTRKLYTE NQRRPLA AKFE
Sbjct: 598 QHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPNQRRPLAPAKFE 657

Query: 63  AWKMWHEDGLSIQRIA 77
           AWKMWHEDGLSIQ+IA
Sbjct: 658 AWKMWHEDGLSIQKIA 673

The following BLAST results are available for this feature:
BLAST of CsGy4G010565 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy4G010565 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53924.26.28e-73100.00hypothetical protein Csa_019143 [Cucumis sativus][more]
XP_011653463.28.33e-3184.21uncharacterized protein LOC101222028 [Cucumis sativus] >KGN53928.2 hypothetical ... [more]
KAA0041766.11.08e-3084.21ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo var. makuwa][more]
XP_008442016.11.09e-3084.21PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo][more]
XP_008442015.11.14e-3084.21PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X1 [Cucumis melo][more]
BLAST of CsGy4G010565 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWB65.85e-68100.00ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188670 PE=3 SV=1[more]
A0A0A0L1A43.29e-3184.21ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_4G188732 PE=3 SV=1[more]
A0A5A7TI775.24e-3184.21ATP-dependent DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A1S3B4R45.29e-3184.21ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1[more]
A0A1S3B4Q25.50e-3184.21ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1[more]
BLAST of CsGy4G010565 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G010565.1CsGy4G010565.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006268 DNA unwinding involved in DNA replication
biological_process GO:0000724 double-strand break repair via homologous recombination
cellular_component GO:0005694 chromosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0043138 3'-5' DNA helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0009378 four-way junction helicase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003723 RNA binding