CsGy4G010390 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G010390
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDolichol-phosphate mannosyltransferase subunit 3
LocationGy14Chr4: 9245702 .. 9249795 (+)
RNA-Seq ExpressionCsGy4G010390
SyntenyCsGy4G010390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCATATAGTTAAGATTTTGACATTATTGGTGGCCATATCAGCTCTGTGGATTGGCCTCTTGCAGACATCTATATTACCACATGGCCACACTTGGTTGGTGAGTTTGCATTCAATCATTTTTTTCTTAAATTCTTTATATTTATTTTCATCATTTTACACACACAGTGGTCAGCTTACTTTGCATGTCTTGTCACTCCAGCTACCCATCTATTTTATTGTCTCCCTTGGATGCTATGGTTTGTTGATGGTTGGAATCGGTCTAATGACATTTCCAACTTGCCCTGCAGAAGGATTGTTGCTGCAGAAGGTACTGCTTCCCCTTTACTCTTATCTGCACTTTCATATCATACAACAAAGGGCCCCCTCTTCTCTCTCCTTTTTCTCTGGAATGTTCTCCAAGTTTCCATATCCAATGTATTACTAA

mRNA sequence

ATGAAGCATATAGTTAAGATTTTGACATTATTGGTGGCCATATCAGCTCTGTGGATTGGCCTCTTGCAGACATCTATATTACCACATGGCCACACTTGGTTGGTGAGTTTGCATTCAATCATTTTTTTCTTAAATTCTTTATATTTATTTTCATCATTTTACACACACAGTGGTCAGCTTACTTTGCATGTCTTGTCACTCCAGCTACCCATCTATTTTATTGTCTCCCTTGGATGCTATGGTTTGTTGATGGTTGGAATCGGTCTAATGACATTTCCAACTTGCCCTGCAGAAGGATTGTTGCTGCAGAAGGTACTGCTTCCCCTTTACTCTTATCTGCACTTTCATATCATACAACAAAGGGCCCCCTCTTCTCTCTCCTTTTTCTCTGGAATGTTCTCCAAGTTTCCATATCCAATGTATTACTAA

Coding sequence (CDS)

ATGAAGCATATAGTTAAGATTTTGACATTATTGGTGGCCATATCAGCTCTGTGGATTGGCCTCTTGCAGACATCTATATTACCACATGGCCACACTTGGTTGGTGAGTTTGCATTCAATCATTTTTTTCTTAAATTCTTTATATTTATTTTCATCATTTTACACACACAGTGGTCAGCTTACTTTGCATGTCTTGTCACTCCAGCTACCCATCTATTTTATTGTCTCCCTTGGATGCTATGGTTTGTTGATGGTTGGAATCGGTCTAATGACATTTCCAACTTGCCCTGCAGAAGGATTGTTGCTGCAGAAGGTACTGCTTCCCCTTTACTCTTATCTGCACTTTCATATCATACAACAAAGGGCCCCCTCTTCTCTCTCCTTTTTCTCTGGAATGTTCTCCAAGTTTCCATATCCAATGTATTACTAA

Protein sequence

MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQLTLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQKVLLPLYSYLHFHIIQQRAPSSLSFFSGMFSKFPYPMYY*
Homology
[Close]
BLAST of CsGy4G010390 vs. ExPASy Swiss-Prot
Match: Q8LEQ4 (Dolichol-phosphate mannose synthase subunit 3 OS=Arabidopsis thaliana OX=3702 GN=DPMS3 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-20
Identity = 57/104 (54.81%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKIL+LLVAISA WIGLLQ +I+P  HTWL                          
Sbjct: 1   MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 105
                   LPIYF+VSLGCYGLLMVG+GLM FPTCP E +LLQK
Sbjct: 61  --------LPIYFVVSLGCYGLLMVGVGLMQFPTCPQEAVLLQK 70

[Close]
BLAST of CsGy4G010390 vs. NCBI nr
Match: XP_008465116.1 (PREDICTED: uncharacterized protein LOC103502803 isoform X4 [Cucumis melo] >XP_008465117.1 PREDICTED: uncharacterized protein LOC103502803 isoform X4 [Cucumis melo])

HSP 1 Score: 175 bits (444), Expect = 9.63e-54
Identity = 99/141 (70.21%), Postives = 102/141 (72.34%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL                          
Sbjct: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQKVLLPLYSYLHFHIIQQ 120
                   LPIYFIVSLGCYGLLMVG+GLMTFPTCPAEGLLLQKVLLP YS+LHF +IQQ
Sbjct: 61  --------LPIYFIVSLGCYGLLMVGVGLMTFPTCPAEGLLLQKVLLPFYSHLHFRVIQQ 107

Query: 121 RAPSSLS--FFSGMFSKFPYP 139
           R PSSLS  FFSGMFSKFPYP
Sbjct: 121 RTPSSLSLPFFSGMFSKFPYP 107

[Close]
BLAST of CsGy4G010390 vs. NCBI nr
Match: XP_011653438.1 (dolichol-phosphate mannose synthase subunit 3 [Cucumis sativus])

HSP 1 Score: 120 bits (301), Expect = 1.92e-32
Identity = 70/104 (67.31%), Postives = 70/104 (67.31%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL                          
Sbjct: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 104
                   LPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK
Sbjct: 61  --------LPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 70

[Close]
BLAST of CsGy4G010390 vs. NCBI nr
Match: XP_008465119.1 (PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 isoform X6 [Cucumis melo])

HSP 1 Score: 120 bits (300), Expect = 2.73e-32
Identity = 69/104 (66.35%), Postives = 70/104 (67.31%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL                          
Sbjct: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 104
                   LPIYFIVSLGCYGLLMVG+GLMTFPTCPAEGLLLQK
Sbjct: 61  --------LPIYFIVSLGCYGLLMVGVGLMTFPTCPAEGLLLQK 70

[Close]
BLAST of CsGy4G010390 vs. NCBI nr
Match: XP_038903837.1 (dolichol-phosphate mannose synthase subunit 3-like [Benincasa hispida])

HSP 1 Score: 117 bits (293), Expect = 2.98e-31
Identity = 69/113 (61.06%), Postives = 72/113 (63.72%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLLVA+SALWIGLLQTSILPHGH WL                          
Sbjct: 1   MKHIVKILTLLVAVSALWIGLLQTSILPHGHAWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQKVLLPLYSYL 113
                   LPIYFIVSLGCYGLLMVGIGLMTFPTCP EGLLLQK ++    YL
Sbjct: 61  --------LPIYFIVSLGCYGLLMVGIGLMTFPTCPREGLLLQKDIVEAKEYL 79

[Close]
BLAST of CsGy4G010390 vs. NCBI nr
Match: XP_038896881.1 (dolichol-phosphate mannose synthase subunit 3-like [Benincasa hispida] >XP_038896882.1 dolichol-phosphate mannose synthase subunit 3-like [Benincasa hispida] >XP_038896884.1 dolichol-phosphate mannose synthase subunit 3-like [Benincasa hispida] >XP_038896885.1 dolichol-phosphate mannose synthase subunit 3-like [Benincasa hispida])

HSP 1 Score: 116 bits (290), Expect = 9.01e-31
Identity = 67/104 (64.42%), Postives = 68/104 (65.38%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLLVA+SALWIGLLQTSILPHGHTWL                          
Sbjct: 1   MKHIVKILTLLVAVSALWIGLLQTSILPHGHTWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 104
                   LPIY IVSLGCYGLLMVGIGLMTFPTCP EGLLLQK
Sbjct: 61  --------LPIYLIVSLGCYGLLMVGIGLMTFPTCPTEGLLLQK 70

[Close]
BLAST of CsGy4G010390 vs. ExPASy TrEMBL
Match: A0A1S3CN50 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucumis melo OX=3656 GN=LOC103502803 PE=3 SV=1)

HSP 1 Score: 175 bits (444), Expect = 4.66e-54
Identity = 99/141 (70.21%), Postives = 102/141 (72.34%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL                          
Sbjct: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQKVLLPLYSYLHFHIIQQ 120
                   LPIYFIVSLGCYGLLMVG+GLMTFPTCPAEGLLLQKVLLP YS+LHF +IQQ
Sbjct: 61  --------LPIYFIVSLGCYGLLMVGVGLMTFPTCPAEGLLLQKVLLPFYSHLHFRVIQQ 107

Query: 121 RAPSSLS--FFSGMFSKFPYP 139
           R PSSLS  FFSGMFSKFPYP
Sbjct: 121 RTPSSLSLPFFSGMFSKFPYP 107

[Close]
BLAST of CsGy4G010390 vs. ExPASy TrEMBL
Match: A0A1S3CN63 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucumis melo OX=3656 GN=LOC103502803 PE=3 SV=1)

HSP 1 Score: 120 bits (300), Expect = 1.32e-32
Identity = 69/104 (66.35%), Postives = 70/104 (67.31%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL                          
Sbjct: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 104
                   LPIYFIVSLGCYGLLMVG+GLMTFPTCPAEGLLLQK
Sbjct: 61  --------LPIYFIVSLGCYGLLMVGVGLMTFPTCPAEGLLLQK 70

[Close]
BLAST of CsGy4G010390 vs. ExPASy TrEMBL
Match: A0A6J1FU86 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111446935 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 5.04e-30
Identity = 65/104 (62.50%), Postives = 68/104 (65.38%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLL+AISALWIGLLQTSILPHGH WL                          
Sbjct: 1   MKHIVKILTLLMAISALWIGLLQTSILPHGHAWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 104
                   LPIYFIVSLGCYGLLMVG+GLMTFPTCP EGLLLQ+
Sbjct: 61  --------LPIYFIVSLGCYGLLMVGVGLMTFPTCPREGLLLQQ 70

[Close]
BLAST of CsGy4G010390 vs. ExPASy TrEMBL
Match: A0A6J1FP02 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111446935 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.24e-29
Identity = 65/104 (62.50%), Postives = 68/104 (65.38%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLL+AISALWIGLLQTSILPHGH WL                          
Sbjct: 32  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWL-------------------------- 91

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 104
                   LPIYFIVSLGCYGLLMVG+GLMTFPTCP EGLLLQ+
Sbjct: 92  --------LPIYFIVSLGCYGLLMVGVGLMTFPTCPREGLLLQQ 101

[Close]
BLAST of CsGy4G010390 vs. ExPASy TrEMBL
Match: A0A6J1JY89 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111488551 PE=3 SV=1)

HSP 1 Score: 112 bits (280), Expect = 1.44e-29
Identity = 64/104 (61.54%), Postives = 68/104 (65.38%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKILTLL+AISALWIGLLQTSILPHGH WL                          
Sbjct: 1   MKHIVKILTLLMAISALWIGLLQTSILPHGHAWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 104
                   LPIYFIVSLGCYGLLMVG+GLMTFPTCP EG+LLQ+
Sbjct: 61  --------LPIYFIVSLGCYGLLMVGVGLMTFPTCPREGVLLQQ 70

[Close]
BLAST of CsGy4G010390 vs. TAIR 10
Match: AT1G48140.1 (dolichol-phosphate mannosyltransferase-related )

HSP 1 Score: 100.9 bits (250), Expect = 8.7e-22
Identity = 57/104 (54.81%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKIL+LLVAISA WIGLLQ +I+P  HTWL                          
Sbjct: 1   MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQK 105
                   LPIYF+VSLGCYGLLMVG+GLM FPTCP E +LLQK
Sbjct: 61  --------LPIYFVVSLGCYGLLMVGVGLMQFPTCPQEAVLLQK 70

[Close]
BLAST of CsGy4G010390 vs. TAIR 10
Match: AT1G48140.2 (dolichol-phosphate mannosyltransferase-related )

HSP 1 Score: 100.9 bits (250), Expect = 8.7e-22
Identity = 58/106 (54.72%), Postives = 64/106 (60.38%), Query Frame = 0 

Query: 1   MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLVSLHSIIFFLNSLYLFSSFYTHSGQL 60
           MKHIVKIL+LLVAISA WIGLLQ +I+P  HTWL                          
Sbjct: 1   MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWL-------------------------- 60

Query: 61  TLHVLSLQLPIYFIVSLGCYGLLMVGIGLMTFPTCPAEGLLLQKVL 107
                   LPIYF+VSLGCYGLLMVG+GLM FPTCP E +LLQK L
Sbjct: 61  --------LPIYFVVSLGCYGLLMVGVGLMQFPTCPQEAVLLQKRL 72

The following BLAST results are available for this feature:
BLAST of CsGy4G010390 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LEQ41.2e-2054.81Dolichol-phosphate mannose synthase subunit 3 OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of CsGy4G010390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465116.19.63e-5470.21PREDICTED: uncharacterized protein LOC103502803 isoform X4 [Cucumis melo] >XP_00... [more]
XP_011653438.11.92e-3267.31dolichol-phosphate mannose synthase subunit 3 [Cucumis sativus][more]
XP_008465119.12.73e-3266.35PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 isoform X6 [Cucumis ... [more]
XP_038903837.12.98e-3161.06dolichol-phosphate mannose synthase subunit 3-like [Benincasa hispida][more]
XP_038896881.19.01e-3164.42dolichol-phosphate mannose synthase subunit 3-like [Benincasa hispida] >XP_03889... [more]
BLAST of CsGy4G010390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CN504.66e-5470.21Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A1S3CN631.32e-3266.35Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1FU865.04e-3062.50Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1FP021.24e-2962.50Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1JY891.44e-2961.54Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=... [more]
BLAST of CsGy4G010390 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48140.18.7e-2254.81dolichol-phosphate mannosyltransferase-related [more]
AT1G48140.28.7e-2254.72dolichol-phosphate mannosyltransferase-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013174Dolichol-phosphate mannosyltransferase subunit 3PFAMPF08285DPM3coord: 38..104
e-value: 1.2E-8
score: 35.1
IPR013174Dolichol-phosphate mannosyltransferase subunit 3PANTHERPTHR16433DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 3coord: 1..43
coord: 62..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G010390.2CsGy4G010390.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane