Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATGGGTTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCTTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCGGCAGCATCCCCACCTCCCGCCACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCCACCCCACCACCTGCTTCGACCCCACCATCATCGCCTCCTAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACAGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCATCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAACAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGGAGGAAATGGGGCGGCAAGCGTTAGCCGGGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTATTTGCTTAGAGCGATTGAGTTCAAACGACACAAAGAGTGGAGTGCGATCCATTTTGGTGTTGGTTTTAATTATTGAAATGGAAAAATTTGATATTTGATATTTATGTTAATTGTAGTGTTGTTAATTTTTCCTTGATTATAACTTCTTCCCAATATTTGTGTATGGTATTCTCTTTGGAG
mRNA sequence
ATGAAAATGGGTTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCTTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCGGCAGCATCCCCACCTCCCGCCACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCCACCCCACCACCTGCTTCGACCCCACCATCATCGCCTCCTAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACAGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCATCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAACAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGGAGGAAATGGGGCGGCAAGCGTTAGCCGGGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTATTTGCTTAGAGCGATTGAGTTCAAACGACACAAAGAGTGGAGTGCGATCCATTTTGGTGTTGGTTTTAATTATTGAAATGGAAAAATTTGATATTTGATATTTATGTTAATTGTAGTGTTGTTAATTTTTCCTTGATTATAACTTCTTCCCAATATTTGTGTATGGTATTCTCTTTGGAG
Coding sequence (CDS)
ATGAAAATGGGTTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCTTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCGGCAGCATCCCCACCTCCCGCCACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCCACCCCACCACCTGCTTCGACCCCACCATCATCGCCTCCTAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACAGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCATCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAACAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGGAGGAAATGGGGCGGCAAGCGTTAGCCGGGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTATTTGCTTAG
Protein sequence
MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA*
Homology
BLAST of CsGy4G008660 vs. NCBI nr
Match:
KAA0053440.1 (classical arabinogalactan protein 9 [Cucumis melo var. makuwa])
HSP 1 Score: 235 bits (600), Expect = 2.63e-76
Identity = 164/176 (93.18%), Postives = 165/176 (93.75%), Query Frame = 0
Query: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
ATPPPATPPPA STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61 ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
PTSSPPSPPPEGNVPTNSPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of CsGy4G008660 vs. NCBI nr
Match:
TYK14854.1 (vegetative cell wall protein gp1 [Cucumis melo var. makuwa])
HSP 1 Score: 233 bits (595), Expect = 1.52e-75
Identity = 163/176 (92.61%), Postives = 165/176 (93.75%), Query Frame = 0
Query: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
ATPPPATPPPA STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61 ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
PTSSPPSPPPEGNVPT+SPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 PTSSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of CsGy4G008660 vs. NCBI nr
Match:
XP_008455676.1 (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])
HSP 1 Score: 229 bits (585), Expect = 4.73e-74
Identity = 161/174 (92.53%), Postives = 163/174 (93.68%), Query Frame = 0
Query: 3 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 62
MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT
Sbjct: 1 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 60
Query: 63 PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 122
PPPATPPPA STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT
Sbjct: 61 PPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 120
Query: 123 SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
SSPPSPPPEGNVPT+SPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 SSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164
BLAST of CsGy4G008660 vs. NCBI nr
Match:
XP_022984561.1 (classical arabinogalactan protein 4-like [Cucurbita maxima])
HSP 1 Score: 157 bits (397), Expect = 1.48e-45
Identity = 131/179 (73.18%), Postives = 139/179 (77.65%), Query Frame = 0
Query: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFVM LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP +P ATPPP
Sbjct: 1 MKMGFQFVMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP-------ATPPP 60
Query: 61 ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
A ATPPPATPPPA PP S PPSSPP+QPPASPPTSP T PPKEGP S
Sbjct: 61 A----ATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSP---------TPPPKEGPASS 120
Query: 121 PT---SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
PT +SPPSPP EG VP+ SPGP+ PPPPPG NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 PTPSSASPPSPPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
BLAST of CsGy4G008660 vs. NCBI nr
Match:
XP_023545089.1 (classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 157 bits (398), Expect = 1.61e-45
Identity = 136/178 (76.40%), Postives = 149/178 (83.71%), Query Frame = 0
Query: 3 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPA-TPPPA 62
MG QF+M LA ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPPPATPPPA TPPPA
Sbjct: 1 MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATPPPA 60
Query: 63 TPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPP 122
TPPPATPPPATPPPATPP ++TPPSSPPSQPPA+PPTSP +P+S PT PPKEGP S P
Sbjct: 61 TPPPATPPPATPPPATPP-SATPPSSPPSQPPATPPTSP---APTSSPTPPPKEGPASSP 120
Query: 123 ---TSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
T+SPPSPP EGNVP+ +PGP+ PPPP NGA S+SR MVG AV+G LAMVFA
Sbjct: 121 SPSTASPPSPPTEGNVPSGAPGPNAPPPPE-DNGAVSISRVAMVGSAVSGVLLAMVFA 173
BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match:
A0A0A0L0L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1)
HSP 1 Score: 236 bits (601), Expect = 8.98e-77
Identity = 165/176 (93.75%), Postives = 165/176 (93.75%), Query Frame = 0
Query: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
ATPPPATPPPA STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61 ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
PTSSPPSPPPEGNVPTNSPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAMVFA
Sbjct: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166
BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match:
A0A5A7UE17 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001110 PE=4 SV=1)
HSP 1 Score: 235 bits (600), Expect = 1.27e-76
Identity = 164/176 (93.18%), Postives = 165/176 (93.75%), Query Frame = 0
Query: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
ATPPPATPPPA STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61 ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
PTSSPPSPPPEGNVPTNSPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match:
A0A5D3CV77 (Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00250 PE=4 SV=1)
HSP 1 Score: 233 bits (595), Expect = 7.35e-76
Identity = 163/176 (92.61%), Postives = 165/176 (93.75%), Query Frame = 0
Query: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
Query: 61 ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
ATPPPATPPPA STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61 ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
PTSSPPSPPPEGNVPT+SPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 PTSSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match:
A0A1S3C1K1 (vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV=1)
HSP 1 Score: 229 bits (585), Expect = 2.29e-74
Identity = 161/174 (92.53%), Postives = 163/174 (93.68%), Query Frame = 0
Query: 3 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 62
MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT
Sbjct: 1 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 60
Query: 63 PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 122
PPPATPPPA STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT
Sbjct: 61 PPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 120
Query: 123 SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
SSPPSPPPEGNVPT+SPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 SSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164
BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match:
A0A6J1J5L5 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111482820 PE=4 SV=1)
HSP 1 Score: 157 bits (397), Expect = 7.19e-46
Identity = 131/179 (73.18%), Postives = 139/179 (77.65%), Query Frame = 0
Query: 1 MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
MKMGFQFVM LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP +P ATPPP
Sbjct: 1 MKMGFQFVMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP-------ATPPP 60
Query: 61 ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
A ATPPPATPPPA PP S PPSSPP+QPPASPPTSP T PPKEGP S
Sbjct: 61 A----ATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSP---------TPPPKEGPASS 120
Query: 121 PT---SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
PT +SPPSPP EG VP+ SPGP+ PPPPPG NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 PTPSSASPPSPPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAA0053440.1 | 2.63e-76 | 93.18 | classical arabinogalactan protein 9 [Cucumis melo var. makuwa] | [more] |
TYK14854.1 | 1.52e-75 | 92.61 | vegetative cell wall protein gp1 [Cucumis melo var. makuwa] | [more] |
XP_008455676.1 | 4.73e-74 | 92.53 | PREDICTED: vegetative cell wall protein gp1 [Cucumis melo] | [more] |
XP_022984561.1 | 1.48e-45 | 73.18 | classical arabinogalactan protein 4-like [Cucurbita maxima] | [more] |
XP_023545089.1 | 1.61e-45 | 76.40 | classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0L0L1 | 8.98e-77 | 93.75 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1 | [more] |
A0A5A7UE17 | 1.27e-76 | 93.18 | Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
A0A5D3CV77 | 7.35e-76 | 92.61 | Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A1S3C1K1 | 2.29e-74 | 92.53 | vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV... | [more] |
A0A6J1J5L5 | 7.19e-46 | 73.18 | classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
Match Name | E-value | Identity | Description | |