CsGy4G008660 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G008660
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionClassical arabinogalactan protein 9
LocationGy14Chr4: 6664062 .. 6664763 (-)
RNA-Seq ExpressionCsGy4G008660
SyntenyCsGy4G008660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATGGGTTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCTTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCGGCAGCATCCCCACCTCCCGCCACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCCACCCCACCACCTGCTTCGACCCCACCATCATCGCCTCCTAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACAGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCATCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAACAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGGAGGAAATGGGGCGGCAAGCGTTAGCCGGGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTATTTGCTTAGAGCGATTGAGTTCAAACGACACAAAGAGTGGAGTGCGATCCATTTTGGTGTTGGTTTTAATTATTGAAATGGAAAAATTTGATATTTGATATTTATGTTAATTGTAGTGTTGTTAATTTTTCCTTGATTATAACTTCTTCCCAATATTTGTGTATGGTATTCTCTTTGGAG

mRNA sequence

ATGAAAATGGGTTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCTTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCGGCAGCATCCCCACCTCCCGCCACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCCACCCCACCACCTGCTTCGACCCCACCATCATCGCCTCCTAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACAGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCATCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAACAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGGAGGAAATGGGGCGGCAAGCGTTAGCCGGGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTATTTGCTTAGAGCGATTGAGTTCAAACGACACAAAGAGTGGAGTGCGATCCATTTTGGTGTTGGTTTTAATTATTGAAATGGAAAAATTTGATATTTGATATTTATGTTAATTGTAGTGTTGTTAATTTTTCCTTGATTATAACTTCTTCCCAATATTTGTGTATGGTATTCTCTTTGGAG

Coding sequence (CDS)

ATGAAAATGGGTTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCTTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCGGCAGCATCCCCACCTCCCGCCACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCAACCCCACCACCGGCTACTCCTCCTCCAGCCACCCCACCACCTGCTTCGACCCCACCATCATCGCCTCCTAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACAGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCATCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAACAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGGAGGAAATGGGGCGGCAAGCGTTAGCCGGGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTATTTGCTTAG

Protein sequence

MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA*
Homology
BLAST of CsGy4G008660 vs. NCBI nr
Match: KAA0053440.1 (classical arabinogalactan protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 235 bits (600), Expect = 2.63e-76
Identity = 164/176 (93.18%), Postives = 165/176 (93.75%), Query Frame = 0

Query: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
           MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60

Query: 61  ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
           ATPPPATPPPA          STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61  ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120

Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
           PTSSPPSPPPEGNVPTNSPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

BLAST of CsGy4G008660 vs. NCBI nr
Match: TYK14854.1 (vegetative cell wall protein gp1 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (595), Expect = 1.52e-75
Identity = 163/176 (92.61%), Postives = 165/176 (93.75%), Query Frame = 0

Query: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
           MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60

Query: 61  ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
           ATPPPATPPPA          STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61  ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120

Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
           PTSSPPSPPPEGNVPT+SPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 PTSSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

BLAST of CsGy4G008660 vs. NCBI nr
Match: XP_008455676.1 (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])

HSP 1 Score: 229 bits (585), Expect = 4.73e-74
Identity = 161/174 (92.53%), Postives = 163/174 (93.68%), Query Frame = 0

Query: 3   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 62
           MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 60

Query: 63  PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 122
           PPPATPPPA          STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT
Sbjct: 61  PPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 120

Query: 123 SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
           SSPPSPPPEGNVPT+SPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 SSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164

BLAST of CsGy4G008660 vs. NCBI nr
Match: XP_022984561.1 (classical arabinogalactan protein 4-like [Cucurbita maxima])

HSP 1 Score: 157 bits (397), Expect = 1.48e-45
Identity = 131/179 (73.18%), Postives = 139/179 (77.65%), Query Frame = 0

Query: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
           MKMGFQFVM LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +P       ATPPP
Sbjct: 1   MKMGFQFVMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP-------ATPPP 60

Query: 61  ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
           A    ATPPPATPPPA  PP S PPSSPP+QPPASPPTSP         T PPKEGP S 
Sbjct: 61  A----ATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSP---------TPPPKEGPASS 120

Query: 121 PT---SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
           PT   +SPPSPP EG VP+ SPGP+ PPPPPG NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 PTPSSASPPSPPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159

BLAST of CsGy4G008660 vs. NCBI nr
Match: XP_023545089.1 (classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157 bits (398), Expect = 1.61e-45
Identity = 136/178 (76.40%), Postives = 149/178 (83.71%), Query Frame = 0

Query: 3   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPA-TPPPA 62
           MG QF+M LA  ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPPPATPPPA TPPPA
Sbjct: 1   MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATPPPA 60

Query: 63  TPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPP 122
           TPPPATPPPATPPPATPP ++TPPSSPPSQPPA+PPTSP   +P+S PT PPKEGP S P
Sbjct: 61  TPPPATPPPATPPPATPP-SATPPSSPPSQPPATPPTSP---APTSSPTPPPKEGPASSP 120

Query: 123 ---TSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
              T+SPPSPP EGNVP+ +PGP+ PPPP   NGA S+SR  MVG AV+G  LAMVFA
Sbjct: 121 SPSTASPPSPPTEGNVPSGAPGPNAPPPPE-DNGAVSISRVAMVGSAVSGVLLAMVFA 173

BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match: A0A0A0L0L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1)

HSP 1 Score: 236 bits (601), Expect = 8.98e-77
Identity = 165/176 (93.75%), Postives = 165/176 (93.75%), Query Frame = 0

Query: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
           MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60

Query: 61  ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
           ATPPPATPPPA          STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61  ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120

Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
           PTSSPPSPPPEGNVPTNSPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAMVFA
Sbjct: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166

BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match: A0A5A7UE17 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001110 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 1.27e-76
Identity = 164/176 (93.18%), Postives = 165/176 (93.75%), Query Frame = 0

Query: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
           MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60

Query: 61  ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
           ATPPPATPPPA          STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61  ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120

Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
           PTSSPPSPPPEGNVPTNSPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match: A0A5D3CV77 (Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00250 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 7.35e-76
Identity = 163/176 (92.61%), Postives = 165/176 (93.75%), Query Frame = 0

Query: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
           MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60

Query: 61  ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
           ATPPPATPPPA          STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP
Sbjct: 61  ATPPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120

Query: 121 PTSSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
           PTSSPPSPPPEGNVPT+SPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 PTSSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match: A0A1S3C1K1 (vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV=1)

HSP 1 Score: 229 bits (585), Expect = 2.29e-74
Identity = 161/174 (92.53%), Postives = 163/174 (93.68%), Query Frame = 0

Query: 3   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 62
           MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPAT 60

Query: 63  PPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 122
           PPPATPPPA          STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT
Sbjct: 61  PPPATPPPA----------STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT 120

Query: 123 SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
           SSPPSPPPEGNVPT+SPGPSPPPPPP GNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 121 SSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164

BLAST of CsGy4G008660 vs. ExPASy TrEMBL
Match: A0A6J1J5L5 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111482820 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 7.19e-46
Identity = 131/179 (73.18%), Postives = 139/179 (77.65%), Query Frame = 0

Query: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPP 60
           MKMGFQFVM LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +P       ATPPP
Sbjct: 1   MKMGFQFVMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP-------ATPPP 60

Query: 61  ATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISP 120
           A    ATPPPATPPPA  PP S PPSSPP+QPPASPPTSP         T PPKEGP S 
Sbjct: 61  A----ATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSP---------TPPPKEGPASS 120

Query: 121 PT---SSPPSPPPEGNVPTNSPGPSPPPPPPGGNGAASVSRGMMVGGAVAGAFLAMVFA 176
           PT   +SPPSPP EG VP+ SPGP+ PPPPPG NGAA+VSRG+MVGGAVAGA LAMVFA
Sbjct: 121 PTPSSASPPSPPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0053440.12.63e-7693.18classical arabinogalactan protein 9 [Cucumis melo var. makuwa][more]
TYK14854.11.52e-7592.61vegetative cell wall protein gp1 [Cucumis melo var. makuwa][more]
XP_008455676.14.73e-7492.53PREDICTED: vegetative cell wall protein gp1 [Cucumis melo][more]
XP_022984561.11.48e-4573.18classical arabinogalactan protein 4-like [Cucurbita maxima][more]
XP_023545089.11.61e-4576.40classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A0A0L0L18.98e-7793.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1[more]
A0A5A7UE171.27e-7693.18Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3CV777.35e-7692.61Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3C1K12.29e-7492.53vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV... [more]
A0A6J1J5L57.19e-4673.18classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 68..93
score: 37.69
coord: 23..39
score: 40.0
coord: 47..64
score: 45.56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..151
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..18
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G008660.1CsGy4G008660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005886 plasma membrane