CsGy4G004510 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G004510
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Protein UPSTREAM OF FLC
Location	Gy14Chr4: 2997092 .. 2997394 (+)
RNA-Seq Expression	CsGy4G004510
Synteny	CsGy4G004510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGAAAGACAGAGACCACCACCACCGTCACCACCGTCGCCGCGACTCTCCCACTCCGATGAAAAAAGCCCAAGTTTTTTACTATATCTCCAGAAACGGCCGTCTGGAACAACCCCATTTTCTCGAAATCCCTCTCTTCCCCAACCACCCTCTTCGTCTCAAAGGTACGCTTCTTCTACTATTTCGAACGACACGTCGTTTTGGGTCTCATCGTATTCAATGTGACGACAGATGTTTTGGATCGGCTCGCTGTTCTCAGGGGCAACGCCATGCCTTTCCTCTATTCTTGGTCCTGTAA

mRNA sequence

ATGGAGGAGAAAGACAGAGACCACCACCACCGTCACCACCGTCGCCGCGACTCTCCCACTCCGATGAAAAAAGCCCAAGTTTTTTACTATATCTCCAGAAACGGCCGTCTGGAACAACCCCATTTTCTCGAAATCCCTCTCTTCCCCAACCACCCTCTTCGTCTCAAAGGTACGCTTCTTCTACTATTTCGAACGACACGTCGTTTTGGGTCTCATCGTATTCAATGTGACGACAGATGTTTTGGATCGGCTCGCTGTTCTCAGGGGCAACGCCATGCCTTTCCTCTATTCTTGGTCCTGTAA

Coding sequence (CDS)

ATGGAGGAGAAAGACAGAGACCACCACCACCGTCACCACCGTCGCCGCGACTCTCCCACTCCGATGAAAAAAGCCCAAGTTTTTTACTATATCTCCAGAAACGGCCGTCTGGAACAACCCCATTTTCTCGAAATCCCTCTCTTCCCCAACCACCCTCTTCGTCTCAAAGGTACGCTTCTTCTACTATTTCGAACGACACGTCGTTTTGGGTCTCATCGTATTCAATGTGACGACAGATGTTTTGGATCGGCTCGCTGTTCTCAGGGGCAACGCCATGCCTTTCCTCTATTCTTGGTCCTGTAA

Protein sequence

MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTLLLLFRTTRRFGSHRIQCDDRCFGSARCSQGQRHAFPLFLVL*

Homology

[Close]

BLAST of CsGy4G004510 vs. ExPASy Swiss-Prot
Match: Q9LX14 (Protein SOSEKI 2 OS=Arabidopsis thaliana OX=3702 GN=SOK2 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 23/57 (40.35%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 8  HHHRHHRRRDSPTPMKK-----AQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 60
          +HH+H    +     KK      QV YY++RNG LE PHF+E+    N PLRL+  +
Sbjct: 24 NHHQHDEELEEEVKTKKPIFRRVQVVYYLTRNGHLEHPHFIEVISPVNQPLRLRDVM 80

[Close]

BLAST of CsGy4G004510 vs. ExPASy Swiss-Prot
Match: Q8GY65 (Protein SOSEKI 4 OS=Arabidopsis thaliana OX=3702 GN=SOK4 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-04
Identity = 19/41 (46.34%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 19 PTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 60
          P+  +   V YY+SRNGRL+ PHF+E+PL  ++ L LK  +
Sbjct: 14 PSRERIVPVVYYLSRNGRLDHPHFIEVPLSSHNGLYLKDVI 54

[Close]

BLAST of CsGy4G004510 vs. NCBI nr
Match: XP_031745652.1 (uncharacterized protein LOC116406091 isoform X3 [Cucumis sativus] >XP_031745656.1 uncharacterized protein LOC116406092 isoform X3 [Cucumis sativus] >XP_031745704.1 uncharacterized protein LOC116406148 isoform X3 [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 2.65e-34
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 59
          MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGT+
Sbjct: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTI 59

[Close]

BLAST of CsGy4G004510 vs. NCBI nr
Match: XP_031739671.1 (protein UPSTREAM OF FLC isoform X3 [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 1.17e-32
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 59
          MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGT+
Sbjct: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTI 59

[Close]

BLAST of CsGy4G004510 vs. NCBI nr
Match: KAE8637152.1 (hypothetical protein CSA_004634 [Cucumis sativus] >KAE8637178.1 hypothetical protein CSA_018809 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 1.62e-32
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 59
          MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLK  L
Sbjct: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKDVL 59

[Close]

BLAST of CsGy4G004510 vs. NCBI nr
Match: XP_031745651.1 (protein UPSTREAM OF FLC-like isoform X2 [Cucumis sativus] >XP_031745655.1 protein UPSTREAM OF FLC-like isoform X2 [Cucumis sativus] >XP_031745703.1 protein UPSTREAM OF FLC-like isoform X2 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 1.81e-32
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 59
          MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLK  L
Sbjct: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKDVL 59

[Close]

BLAST of CsGy4G004510 vs. NCBI nr
Match: XP_031745649.1 (uncharacterized protein LOC116406091 isoform X1 [Cucumis sativus] >XP_031745650.1 uncharacterized protein LOC116406091 isoform X1 [Cucumis sativus] >XP_031745653.1 uncharacterized protein LOC116406092 isoform X1 [Cucumis sativus] >XP_031745654.1 uncharacterized protein LOC116406092 isoform X1 [Cucumis sativus] >XP_031745701.1 uncharacterized protein LOC116406148 isoform X1 [Cucumis sativus] >XP_031745702.1 uncharacterized protein LOC116406148 isoform X1 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 4.67e-32
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 59
          MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLK  L
Sbjct: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKDVL 59

[Close]

BLAST of CsGy4G004510 vs. ExPASy TrEMBL
Match: A0A0A0KXS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G027920 PE=3 SV=1)

HSP 1 Score: 122 bits (306), Expect = 2.78e-31
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 59
          MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLK  L
Sbjct: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKDVL 59

[Close]

BLAST of CsGy4G004510 vs. ExPASy TrEMBL
Match: A0A5A7SXF0 (Protein UPSTREAM OF FLC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold494G00080 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.32e-22
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLK 56
          MEEKDRDH  RHH  RDSPTPMKKA   YYISRNGRLEQPHFLEIPLFP+HPLRLK
Sbjct: 1  MEEKDRDH--RHHCHRDSPTPMKKA---YYISRNGRLEQPHFLEIPLFPDHPLRLK 51

[Close]

BLAST of CsGy4G004510 vs. ExPASy TrEMBL
Match: A0A5D3CZG1 (Protein UPSTREAM OF FLC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005900 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.08e-21
Identity = 47/56 (83.93%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MEEKDRDHHHRHHRRRDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLK 56
          MEEKDRDH  RHH  RDSPTPMKKA   YYISRNGRLEQPHFLEI LFP+HPLRLK
Sbjct: 1  MEEKDRDH--RHHCHRDSPTPMKKA---YYISRNGRLEQPHFLEIHLFPDHPLRLK 51

[Close]

BLAST of CsGy4G004510 vs. ExPASy TrEMBL
Match: A0A6J1FUF7 (protein UPSTREAM OF FLC isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446977 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.20e-14
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 18 SPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 59
          +P PMKK QVFYY+SRNGRLEQPHFLEI LFPN PLRLK  +
Sbjct: 36 APPPMKKVQVFYYLSRNGRLEQPHFLEISLFPNQPLRLKDVM 77

[Close]

BLAST of CsGy4G004510 vs. ExPASy TrEMBL
Match: A0A4S8J7T0 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb03t01420 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.52e-12
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 20 TPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTLL 60
          TP +K QV YY+SRNG+LEQPHF+E+P  PN  LRL+G LL
Sbjct: 37 TPPRKVQVIYYLSRNGQLEQPHFIELPHLPNQQLRLRGCLL 77

[Close]

BLAST of CsGy4G004510 vs. TAIR 10
Match: AT5G10150.1 (Domain of unknown function (DUF966) )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 23/57 (40.35%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 8  HHHRHHRRRDSPTPMKK-----AQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 60
          +HH+H    +     KK      QV YY++RNG LE PHF+E+    N PLRL+  +
Sbjct: 24 NHHQHDEELEEEVKTKKPIFRRVQVVYYLTRNGHLEHPHFIEVISPVNQPLRLRDVM 80

[Close]

BLAST of CsGy4G004510 vs. TAIR 10
Match: AT3G46110.2 (Domain of unknown function (DUF966) )

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-05
Identity = 19/41 (46.34%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 19 PTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 60
          P+  +   V YY+SRNGRL+ PHF+E+PL  ++ L LK  +
Sbjct: 14 PSRERIVPVVYYLSRNGRLDHPHFIEVPLSSHNGLYLKDVI 54

[Close]

BLAST of CsGy4G004510 vs. TAIR 10
Match: AT3G46110.1 (Domain of unknown function (DUF966) )

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-05
Identity = 19/41 (46.34%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 19 PTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 60
          P+  +   V YY+SRNGRL+ PHF+E+PL  ++ L LK  +
Sbjct: 14 PSRERIVPVVYYLSRNGRLDHPHFIEVPLSSHNGLYLKDVI 54

[Close]

BLAST of CsGy4G004510 vs. TAIR 10
Match: AT5G59790.1 (Domain of unknown function (DUF966) )

HSP 1 Score: 40.8 bits (94), Expect = 7.6e-04
Identity = 18/44 (40.91%), Postives = 26/44 (59.09%), Query Frame = 0


Query: 16 RDSPTPMKKAQVFYYISRNGRLEQPHFLEIPLFPNHPLRLKGTL 60
          R  P   +K  V YY+ RNG+L+ PHF+E+ L  +  L LK  +
Sbjct: 38 RLKPVVNRKVPVVYYLCRNGQLDHPHFIEVTLSSHDGLYLKDVI 81

The following BLAST results are available for this feature:

BLAST of CsGy4G004510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX14	3.3e-04	40.35	Protein SOSEKI 2 OS=Arabidopsis thaliana OX=3702 GN=SOK2 PE=1 SV=1	[more]
Q8GY65	4.3e-04	46.34	Protein SOSEKI 4 OS=Arabidopsis thaliana OX=3702 GN=SOK4 PE=1 SV=1	[more]

BLAST of CsGy4G004510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745652.1	2.65e-34	98.31	uncharacterized protein LOC116406091 isoform X3 [Cucumis sativus] >XP_031745656....	[more]
XP_031739671.1	1.17e-32	98.31	protein UPSTREAM OF FLC isoform X3 [Cucumis sativus]	[more]
KAE8637152.1	1.62e-32	96.61	hypothetical protein CSA_004634 [Cucumis sativus] >KAE8637178.1 hypothetical pro...	[more]
XP_031745651.1	1.81e-32	96.61	protein UPSTREAM OF FLC-like isoform X2 [Cucumis sativus] >XP_031745655.1 protei...	[more]
XP_031745649.1	4.67e-32	96.61	uncharacterized protein LOC116406091 isoform X1 [Cucumis sativus] >XP_031745650....	[more]

BLAST of CsGy4G004510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXS9	2.78e-31	96.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G027920 PE=3 SV=1	[more]
A0A5A7SXF0	1.32e-22	85.71	Protein UPSTREAM OF FLC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CZG1	3.08e-21	83.93	Protein UPSTREAM OF FLC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FUF7	3.20e-14	78.57	protein UPSTREAM OF FLC isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446977...	[more]
A0A4S8J7T0	7.52e-12	65.85	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb03t01420 PE=3 SV=...	[more]

BLAST of CsGy4G004510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10150.1	2.3e-05	40.35	Domain of unknown function (DUF966)	[more]
AT3G46110.2	3.1e-05	46.34	Domain of unknown function (DUF966)	[more]
AT3G46110.1	3.1e-05	46.34	Domain of unknown function (DUF966)	[more]
AT5G59790.1	7.6e-04	40.91	Domain of unknown function (DUF966)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010369	Protein SOSEKI	PFAM	PF06136	DUF966	coord: 26..56 e-value: 6.4E-10 score: 39.3
IPR010369	Protein SOSEKI	PANTHER	PTHR31083	UPSTREAM OF FLC PROTEIN (DUF966)	coord: 9..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR31083:SF18	PROTEIN UPSTREAM OF FLC	coord: 9..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G004510.1	CsGy4G004510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051258	protein polymerization
biological_process	GO:0051302	regulation of cell division
biological_process	GO:2000067	regulation of root morphogenesis
biological_process	GO:0090708	specification of plant organ axis polarity
cellular_component	GO:0031234	extrinsic component of cytoplasmic side of plasma membrane