CsGy4G004497 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G004497
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionMajor pollen allergen Ole e 6-like
LocationGy14Chr4: 2974660 .. 2974905 (+)
RNA-Seq ExpressionCsGy4G004497
SyntenyCsGy4G004497
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAACCATTACGATTGTTTTCTTTATGTCCATTGTTGTGGTGGGATCACTGCAATTCTCTAAGGCACACATGACCGCTGAAAGGGATGCTGAGATTGAGAGGAAATCTAATACTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAACGTGCAAGAAAACATGCACGACAAAAGGCGTTGCTAACGATTTGTGTGATCCTATATGTGATAAAGATTGCATGA

mRNA sequence

ATGGCAAAAACCATTACGATTGTTTTCTTTATGTCCATTGTTGTGGTGGGATCACTGCAATTCTCTAAGGCACACATGACCGCTGAAAGGGATGCTGAGATTGAGAGGAAATCTAATACTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAACGTGCAAGAAAACATGCACGACAAAAGGCGTTGCTAACGATTTGTGTGATCCTATATGTGATAAAGATTGCATGA

Coding sequence (CDS)

ATGGCAAAAACCATTACGATTGTTTTCTTTATGTCCATTGTTGTGGTGGGATCACTGCAATTCTCTAAGGCACACATGACCGCTGAAAGGGATGCTGAGATTGAGAGGAAATCTAATACTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAACGTGCAAGAAAACATGCACGACAAAAGGCGTTGCTAACGATTTGTGTGATCCTATATGTGATAAAGATTGCATGA

Protein sequence

MAKTITIVFFMSIVVVGSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVERARKHARQKALLTICVILYVIKIA*
Homology
[Close]
BLAST of CsGy4G004497 vs. NCBI nr
Match: KAA0036015.1 (major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.56e-15
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MAKTITIVFFMSIVVV-GSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVERA 60
          MAK+ TIVFFM IVVV GSLQFS+A MTAERD EIE +S  L +EISN+ PQ+KSCVE  
Sbjct: 1  MAKSSTIVFFMCIVVVVGSLQFSRADMTAERDTEIEMRSKLLQSEISNVMPQFKSCVETC 60

[Close]
BLAST of CsGy4G004497 vs. NCBI nr
Match: KAA0035393.1 (major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.54e-15
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MAKTITIVFFMSIVVV-GSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVERA 60
          MAKT T+VFFM IVVV GSLQFS+A MTA+RD EIE +S  L +EIS++ PQ+KSCVE  
Sbjct: 1  MAKTSTVVFFMCIVVVVGSLQFSRADMTADRDTEIEMRSKLLQSEISSVMPQFKSCVETC 60

[Close]
BLAST of CsGy4G004497 vs. ExPASy TrEMBL
Match: A0A5A7T3F9 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.55e-16
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MAKTITIVFFMSIVVV-GSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVERA 60
          MAK+ TIVFFM IVVV GSLQFS+A MTAERD EIE +S  L +EISN+ PQ+KSCVE  
Sbjct: 1  MAKSSTIVFFMCIVVVVGSLQFSRADMTAERDTEIEMRSKLLQSEISNVMPQFKSCVETC 60

[Close]
BLAST of CsGy4G004497 vs. ExPASy TrEMBL
Match: A0A5A7SXV7 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13030G00010 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.68e-15
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MAKTITIVFFMSIVVV-GSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVERA 60
          MAKT T+VFFM IVVV GSLQFS+A MTA+RD EIE +S  L +EIS++ PQ+KSCVE  
Sbjct: 1  MAKTSTVVFFMCIVVVVGSLQFSRADMTADRDTEIEMRSKLLQSEISSVMPQFKSCVETC 60

The following BLAST results are available for this feature:
BLAST of CsGy4G004497 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy4G004497 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036015.11.56e-1569.35major pollen allergen Ole e 6-like [Cucumis melo var. makuwa][more]
KAA0035393.15.54e-1566.13major pollen allergen Ole e 6-like [Cucumis melo var. makuwa][more]
BLAST of CsGy4G004497 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T3F97.55e-1669.35Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A5A7SXV72.68e-1566.13Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
BLAST of CsGy4G004497 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G004497.1CsGy4G004497.1mRNA