CsGy4G004380 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G004380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Tetratricopeptide-like helical
Location	Gy14Chr4: 2869411 .. 2869812 (+)
RNA-Seq Expression	CsGy4G004380
Synteny	CsGy4G004380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA

mRNA sequence

ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA

Coding sequence (CDS)

ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM*

Homology

[Close]

BLAST of CsGy4G004380 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 2.26e-67
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
           MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60

Query: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
           F VDGSF GWR RD KADG     ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61  FRVDGSFGGWRRRDWKADGALR--ILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 120

Query: 121 MTMKIISAQRSKM 133
           MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 129

[Close]

BLAST of CsGy4G004380 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (495), Expect = 1.11e-61
Identity = 105/122 (86.07%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
           MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60

Query: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
           F VDGSF GWR RD KADG H   ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61  FRVDGSFGGWRRRDWKADGAHR--ILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 118

Query: 121 MT 122
           MT
Sbjct: 121 MT 118

[Close]

BLAST of CsGy4G004380 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (404), Expect = 1.07e-47
Identity = 94/135 (69.63%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60
           MSVSLEALAMAGI SNEWAMDAEEWERNEI+  VPPHLLADE+DD+D      TST+SNY
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN----VTSTVSNY 60

Query: 61  CFPVDGSFEGWRGRDCKADGGHG-HGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFL 120
            FPV G F+  R  D    G H  H   GI CSLSK +EKRASNGMSSVRIIVRTILGFL
Sbjct: 61  SFPVAGFFDSLRRED---GGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFL 120

Query: 121 MVMTMKIISAQRSKM 133
           +V  +KIISA  S M
Sbjct: 121 LVKILKIISAHTSNM 128

[Close]

BLAST of CsGy4G004380 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159 bits (403), Expect = 1.52e-47
Identity = 93/134 (69.40%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60
           MSVSLEALAMAGI SNEWAMDAEEWERNEI+  VPPHLLADE+DD+D      TST+SNY
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN----VTSTVSNY 60

Query: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120
            FPV G F+     D  AD    H   GI CSLSK +EKRASNGMSSVRIIVRTILGFL+
Sbjct: 61  SFPVAGFFDSLHREDGGAD--DIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLL 120

Query: 121 VMTMKIISAQRSKM 133
           V  +KIISA  S M
Sbjct: 121 VKILKIISAHTSNM 128

[Close]

BLAST of CsGy4G004380 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 112 bits (281), Expect = 3.85e-29
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60
           MSVSLEALAMAGIDSNEWAMDAEEWERNE++  +PPHLLADE+D+ED    ++T   +  
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEED---EMSTKFPATR 60

Query: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LSKVIEKRASNGMSSVRIIVRT 120
           C              C+ D G G    G+ CS      L K+ EKR  N +SS+ I+   
Sbjct: 61  C------------SCCRKDDGVG----GVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSA 120

Query: 121 ILGFLMVMTMKIISAQRSK 132
           ++GFLM MT+KII+++RSK
Sbjct: 121 VVGFLMFMTIKIIASKRSK 120

[Close]

BLAST of CsGy4G004380 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 266 bits (679), Expect = 6.83e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
           MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60

Query: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
           FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV
Sbjct: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120

Query: 121 MTMKIISAQRSKM 133
           MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 133

[Close]

BLAST of CsGy4G004380 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 1.10e-67
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
           MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60

Query: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
           F VDGSF GWR RD KADG     ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61  FRVDGSFGGWRRRDWKADGALR--ILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 120

Query: 121 MTMKIISAQRSKM 133
           MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 129

[Close]

BLAST of CsGy4G004380 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 5.40e-62
Identity = 105/122 (86.07%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
           MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60

Query: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
           F VDGSF GWR RD KADG H   ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61  FRVDGSFGGWRRRDWKADGAHR--ILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 118

Query: 121 MT 122
           MT
Sbjct: 121 MT 118

[Close]

BLAST of CsGy4G004380 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 1.86e-29
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60
           MSVSLEALAMAGIDSNEWAMDAEEWERNE++  +PPHLLADE+D+ED    ++T   +  
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEED---EMSTKFPATR 60

Query: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LSKVIEKRASNGMSSVRIIVRT 120
           C              C+ D G G    G+ CS      L K+ EKR  N +SS+ I+   
Sbjct: 61  C------------SCCRKDDGVG----GVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSA 120

Query: 121 ILGFLMVMTMKIISAQRSK 132
           ++GFLM MT+KII+++RSK
Sbjct: 121 VVGFLMFMTIKIIASKRSK 120

[Close]

BLAST of CsGy4G004380 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.62e-13
Identity = 51/113 (45.13%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN-----EIDVVPPHLLADEEDDEDGDEHVTTST 60
           M VSLEALAMAGIDSNEWAMDAEEW+ N       D++PPHLLADE++     E++    
Sbjct: 1   MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDE-----ENIAAKE 60

Query: 61  ISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCS-------LSKVIEKRAS 101
           +   C        G R    K DG      L +FC+       L K++EKRAS
Sbjct: 61  L---CI------SGHR----KDDG------LVVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of CsGy4G004380 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 5  LEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLAD-------EEDDEDGDE 50
          +EALAMAG+D  EW +  EEWE  E  VVP HLLAD       EED +D D+
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQE-SVVPLHLLADDFKEEEQEEDHQDNDD 51

The following BLAST results are available for this feature:

BLAST of CsGy4G004380 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G004380 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16880.1	2.26e-67	86.47	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
KAA0044707.1	1.11e-61	86.07	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
KAG6577295.1	1.07e-47	69.63	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015383.1	1.52e-47	69.40	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022943015.1	3.85e-29	50.36	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]

BLAST of CsGy4G004380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE7	6.83e-90	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5D3CZU0	1.10e-67	86.47	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TS68	5.40e-62	86.07	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1FX98	1.86e-29	50.36	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KU90	4.62e-13	45.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of CsGy4G004380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22320.1	2.8e-06	53.85	unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G004380.1	CsGy4G004380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane