CsGy4G001400 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G001400
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Embryo-specific protein ATS3A
Location	Gy14Chr4: 845137 .. 847805 (-)
RNA-Seq Expression	CsGy4G001400
Synteny	CsGy4G001400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTGAATGTGATGGGGGTAATTTTGATTGTGTTATCTTATCTAAGACAAAGCATATACATCAACTAAACTTGATCACTCGTTCGTAATTTTTTAGAGAAAAAAGTGAAGGGTTGGACGAGATCTACTAGAAAGTTTCTGTTTCCCGTGTGATTCTCATGGCGTATAGTTTATAGTTAAAAAGTTTTGCCTTTTATTTAACAACACTTTAACCATCTCAGATACACACCTAGATAGCTATGGAAACTTTGAAGAAAGCAACTATTTCCCTTTATTTCCTCCTCGCCATTTTCAGCTTCTCAGGATCATCTAGATCCATCCTTCATCAGCCGCATCCTCAGCCTCTTGAATCCTCCAAAATCAACAATACCCAGGTGAGCAATTTCGATTTCTGTTTATCCAAAAATGTGCATACGATCAAGAACATGAAAGACAGTCGCTATTTTTATAAAGGGTTTCTCATTTTCCCAGGAAAAAAATTTGGGGGCAAAAACTATAGGATTGTGTTAAATTGCTCTAATTGTAATCACCCATTTCTATAATTTGTAGAAATTTTCAGGTTGTGGTCTGATTTTCTGCTCTTGTGAGAAAATTTTGATGTGGGTGTTCGTGTTAAAGCAATCGGTGTAATTTCTTCTTGTTTTGTGTTATTACAGAATGCAGGGAGCTGTTCGTACACGGTAACAATAAAAACAAGCTGTTCATCGCCTGCTTATACTCGGGATTATATCAGTATTGCATTTGGAGATGCATATGGTAATCAGGTACTTTCTGATTTTTTAACAAAATTTCATCCCCAAAATGAAAACTGTGCTGTTTCTTTTTTTTCTTTTTTTTTTTTGTGATTTTGTTGCAAGTTGTGTTATGTTTGAAGTATCAGCTATAGAGAAATCAGGTGATTGTTTGATAAACAGGGAACCAATGTCAGCCATACTCTTCATTAAGTTTCTGTTTGTCTTTAAGGCTTGTGGTTCATTGTTACTTTTGTCGGTATTGTGTTGGGTGATTTTTAGTTGGATTTGGGCAATTTTGTTAGGTGTTTATACCTCTTTATGGACTAAAACAGGATCAAAATAGCAGTCTCATTAACATTTTGGAAGAACAGAGATTAACTAAGTTTTTGTTATCAAGATTTGTATATAGGTTTAGAAATGTTTTGGAAAAATGAAAATTTGAGAAACAGTGAATGTTATAAAACCAAACTTGGTCTAAAACATCAGTGATCTTCTGGATATAGCATATAGTTCCAAAATTTGGATTCTTCAACAGTTGGACTTAATTTCTTTTAAATTACTAGTTAGATACAGGTGCATCAAAGCTGAAAATGTTGAAGGCATAATTTTATGACAAAAAAAAAAGCTATATTGCTCTCTGAAAATTTTGTAGTTTCAACGTGAATGGATATGTCTATAAAATTTGTAGTTATGATGTGAAGGGATATGTCCATATGAATTTTAGTCATTATGTGAATTGATGCGTCAAGCTGAAAAGTTGTGATACTCATTCCCCAGGAGATATGTACATTTTTATGTGGTGAAGGCAAAATAGGAATTACAAAAAATATTATGAAGAACAGTGCGGGCAAAGTAGGCCATAATTCTCAAAGGCTTTAAAGGTCAAAAAGGGAAGAGAAAAGTTATCCTCTTATTGGCCCTCTTCTGTTTAAGTTTTTGTTTGTCATCTCCATTATTCTCCAAATGCAACTCCTTCCCAGATCAGCCTTTGTTTCAAATAATATTTCTTAAATGAGCTATCACTTGAAGAAGTAACTTCTCATATCCCATTCTTCTTTGTCAAAACAAATACAACCCATCACCATTGTTTCAACATCACTCTGCTTTTTTTTGTTGGTGATTTATGCGTTGAAAATGTACATTACTGATTAGGTATATGTACCGAGGATTGATGATCCGTCTTCAAGGGCATTTGAGCGCTGCTCTACAGACAGATATGACTTAAAGGGACCATGCACGTACCAGATATGCTATGTGTACCTCTACCGGAGCGGATACGATGGATGGAAAGTGGACAAAGTAACCATCAGTAGTTATTCTTCAAAATCCGTTACATTTAACTACAACTCGAAGATCCCCAATGATGTTTGGTTTGGTTTTAATTTCTGCTCTGGGCGTCAAGCTGTGGAATCTACTGCAGCAATGTAGAAGACTAAGGTGAAAATTTAAAGCTAAGTAATGCAATGTAATGGGAACAGTTGCTTAAAGTTGTCTGAGTTAAATAAAGTGATGACATCTTTGTAGTAAACTAGGAAATAATGGAAATTCCTGATAGATCTAGTGCTTTCTCCCCTTTCTTTGATGGTTTTTAGCTATTGATGTTATTACTTTCAAAATCCTTGCATATTTTACAAGGATGATTAACTAGAGCTTTAAAAGTTAAAGGCAACAGTAGCTTGGACATTGTACGAAATGTAGGAACGAAATTAGAGGACATGAAAAACAATGTCATATTCAAGAGTTTGAATTTTGTGTCCTATATCTTATCTCTTCTCAAATTGAAATAATATTGAAATAGGTTTAAAAGATCACTTTGTAAGTAATAACGATACTGCTGATGATTACTATGTTGTTTTTGGCATGTATGGAAAATAATATTTGACCATTGTTTTAAGGACTGATTATATATAATGCTTTTTATTTTATGTTGAGAGA

mRNA sequence

TAATTGAATGTGATGGGGGTAATTTTGATTGTGTTATCTTATCTAAGACAAAGCATATACATCAACTAAACTTGATCACTCGTTCGTAATTTTTTAGAGAAAAAAGTGAAGGGTTGGACGAGATCTACTAGAAAGTTTCTGTTTCCCGTGTGATTCTCATGGCGTATAGTTTATAGTTAAAAAGTTTTGCCTTTTATTTAACAACACTTTAACCATCTCAGATACACACCTAGATAGCTATGGAAACTTTGAAGAAAGCAACTATTTCCCTTTATTTCCTCCTCGCCATTTTCAGCTTCTCAGGATCATCTAGATCCATCCTTCATCAGCCGCATCCTCAGCCTCTTGAATCCTCCAAAATCAACAATACCCAGAATGCAGGGAGCTGTTCGTACACGGTAACAATAAAAACAAGCTGTTCATCGCCTGCTTATACTCGGGATTATATCAGTATTGCATTTGGAGATGCATATGGTAATCAGGTATATGTACCGAGGATTGATGATCCGTCTTCAAGGGCATTTGAGCGCTGCTCTACAGACAGATATGACTTAAAGGGACCATGCACGTACCAGATATGCTATGTGTACCTCTACCGGAGCGGATACGATGGATGGAAAGTGGACAAAGTAACCATCAGTAGTTATTCTTCAAAATCCGTTACATTTAACTACAACTCGAAGATCCCCAATGATGTTTGGTTTGGTTTTAATTTCTGCTCTGGGCGTCAAGCTGTGGAATCTACTGCAGCAATGTAGAAGACTAAGGTGAAAATTTAAAGCTAAGTAATGCAATGTAATGGGAACAGTTGCTTAAAGTTGTCTGAGTTAAATAAAGTGATGACATCTTTGTAGTAAACTAGGAAATAATGGAAATTCCTGATAGATCTAGTGCTTTCTCCCCTTTCTTTGATGGTTTTTAGCTATTGATGTTATTACTTTCAAAATCCTTGCATATTTTACAAGGATGATTAACTAGAGCTTTAAAAGTTAAAGGCAACAGTAGCTTGGACATTGTACGAAATGTAGGAACGAAATTAGAGGACATGAAAAACAATGTCATATTCAAGAGTTTGAATTTTGTGTCCTATATCTTATCTCTTCTCAAATTGAAATAATATTGAAATAGGTTTAAAAGATCACTTTGTAAGTAATAACGATACTGCTGATGATTACTATGTTGTTTTTGGCATGTATGGAAAATAATATTTGACCATTGTTTTAAGGACTGATTATATATAATGCTTTTTATTTTATGTTGAGAGA

Coding sequence (CDS)

ATGGAAACTTTGAAGAAAGCAACTATTTCCCTTTATTTCCTCCTCGCCATTTTCAGCTTCTCAGGATCATCTAGATCCATCCTTCATCAGCCGCATCCTCAGCCTCTTGAATCCTCCAAAATCAACAATACCCAGAATGCAGGGAGCTGTTCGTACACGGTAACAATAAAAACAAGCTGTTCATCGCCTGCTTATACTCGGGATTATATCAGTATTGCATTTGGAGATGCATATGGTAATCAGGTATATGTACCGAGGATTGATGATCCGTCTTCAAGGGCATTTGAGCGCTGCTCTACAGACAGATATGACTTAAAGGGACCATGCACGTACCAGATATGCTATGTGTACCTCTACCGGAGCGGATACGATGGATGGAAAGTGGACAAAGTAACCATCAGTAGTTATTCTTCAAAATCCGTTACATTTAACTACAACTCGAAGATCCCCAATGATGTTTGGTTTGGTTTTAATTTCTGCTCTGGGCGTCAAGCTGTGGAATCTACTGCAGCAATGTAG

Protein sequence

METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSCSSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYRSGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM*

Homology

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BLAST of CsGy4G001400 vs. ExPASy Swiss-Prot
Match: Q6NPM5 (Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-43
Identity = 86/160 (53.75%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 7   ATISLYFLLAIFSF----SGSSRSILHQPHPQPLESSKINNTQNAG-SCSYTVTIKTSCS 66
           A++ L+F L  F F    S     +L  PH    ES  ++  Q  G +C+YTV I TSCS
Sbjct: 2   ASVRLFFTLISFVFIISTSVYESKVLDPPH--VAESFNVSLIQKLGNTCAYTVIISTSCS 61

Query: 67  SPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYRS 126
           S  YTRD IS+AFGD YGNQ+Y PR+DDPS++ FE+CS+D + + GPCTYQICYVYLYRS
Sbjct: 62  STRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRS 121

Query: 127 GYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCS 162
           G DGW  + V I S+ SK+VTF YN+ +P  VW+GFN+C+
Sbjct: 122 GPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCN 159

[Close]

BLAST of CsGy4G001400 vs. ExPASy Swiss-Prot
Match: Q681K2 (Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-41
Identity = 85/160 (53.12%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 4   LKKATISLYFLLAIFSFSGSSRSILHQPHPQPLES-SKINNTQNAGSCSYTVTIKTSCSS 63
           L+ A     F L  F+   S+RS +    P P++S       +NA +CSYTV IKTSCSS
Sbjct: 2   LRLAIPLFLFALCSFTLFSSARSFI-TTKPLPIDSFIPKPKLENAAACSYTVIIKTSCSS 61

Query: 64  PAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYRSG 123
            +YTRD ISI+FGD YGN+VYV R+DDPSSR FE+CS+D Y + GPC   +CY+YL R G
Sbjct: 62  VSYTRDKISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQG 121

Query: 124 YDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSG 163
            DGWK + V I   S +SVTF YN  +PN VW+GFN C+G
Sbjct: 122 SDGWKPENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCNG 160

[Close]

BLAST of CsGy4G001400 vs. ExPASy Swiss-Prot
Match: Q9LYP6 (Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.7e-21
Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 48  GSCSYTVTIKTSCSSPAYTRDYISIAFGDAYGNQVYVPRIDD--PSSRAFERCSTDRYDL 107
           G+C YTV + TSC SP  TRD ISI FGDA GN+VY P++           +CST+ + +
Sbjct: 32  GTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTFQV 91

Query: 108 KGPCTYQ-ICYVYLYRSGYDGWKVDKVTISSYSSKSVTFNYNSKIPN-DVWFGFNFCS 162
           +G C    IC +Y+ R+G DGW  + + I S  SKSV F+++  +P  + W+G N C+
Sbjct: 92  RGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNCN 149

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BLAST of CsGy4G001400 vs. NCBI nr
Match: XP_004152204.1 (embryo-specific protein ATS3B [Cucumis sativus] >KGN52886.1 hypothetical protein Csa_014978 [Cucumis sativus])

HSP 1 Score: 351 bits (900), Expect = 5.25e-122
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC
Sbjct: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM
Sbjct: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172

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BLAST of CsGy4G001400 vs. NCBI nr
Match: XP_008454243.1 (PREDICTED: uncharacterized protein LOC103494706 [Cucumis melo] >KAA0044438.1 embryo-specific protein ATS3A [Cucumis melo var. makuwa])

HSP 1 Score: 332 bits (852), Expect = 1.10e-114
Identity = 163/172 (94.77%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           METLKKATIS  FL AIFSFS SSRSILHQPHPQPLES KINNTQNA SCSYTVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGWKVDKVTISSYSS+SVTFNYNSKIPNDVWFGFNFCSG QAVESTAAM
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of CsGy4G001400 vs. NCBI nr
Match: TYK29565.1 (embryo-specific protein ATS3A [Cucumis melo var. makuwa])

HSP 1 Score: 329 bits (844), Expect = 1.82e-113
Identity = 162/172 (94.19%), Postives = 164/172 (95.35%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           METLKKATIS  FL AIFSFS SSRSILHQPHPQPLES KINNTQNA SCSYTVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSPAYTRDYISIAF DAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFRDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGWKVDKVTISSYSS+SVTFNYNSKIPNDVWFGFNFCSG QAVESTAAM
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of CsGy4G001400 vs. NCBI nr
Match: XP_038883265.1 (embryo-specific protein ATS3B-like [Benincasa hispida])

HSP 1 Score: 322 bits (826), Expect = 1.01e-110
Identity = 158/172 (91.86%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           MET KK TISLYFL A+FSFS SSRSI HQP PQPLES KINNTQNA SCSYTVTIKTSC
Sbjct: 1   METFKKVTISLYFLFALFSFSESSRSIPHQPQPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSPAYTRD+ISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDL+GPCTYQICYVYLYR
Sbjct: 61  SSPAYTRDHISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLRGPCTYQICYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGWKVDKVTISSYSSK VTF+YNSKIPNDVWFGFNFCSG QAVESTAAM
Sbjct: 121 SGYDGWKVDKVTISSYSSKPVTFSYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of CsGy4G001400 vs. NCBI nr
Match: XP_022153592.1 (embryo-specific protein ATS3B-like [Momordica charantia])

HSP 1 Score: 286 bits (733), Expect = 1.52e-96
Identity = 137/172 (79.65%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           ME  K + ISLYFL A+F+FS  S SI+HQ  P PLES KINNTQNAGSCS+TVTIKTSC
Sbjct: 1   MEAXKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSP YTRD ISI+FGDAYGNQVY+PRIDDPSSRAFERCSTDR+D+KGPCTYQICYVYLYR
Sbjct: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGW VDKVTIS Y++++VTFNYNS+IPND+WFGFN CS  QAVESTAA+
Sbjct: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 172

[Close]

BLAST of CsGy4G001400 vs. ExPASy TrEMBL
Match: A0A0A0KYF3 (FBA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G004950 PE=4 SV=1)

HSP 1 Score: 351 bits (900), Expect = 2.54e-122
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC
Sbjct: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM
Sbjct: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172

[Close]

BLAST of CsGy4G001400 vs. ExPASy TrEMBL
Match: A0A5A7TNJ2 (Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001700 PE=4 SV=1)

HSP 1 Score: 332 bits (852), Expect = 5.32e-115
Identity = 163/172 (94.77%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           METLKKATIS  FL AIFSFS SSRSILHQPHPQPLES KINNTQNA SCSYTVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGWKVDKVTISSYSS+SVTFNYNSKIPNDVWFGFNFCSG QAVESTAAM
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of CsGy4G001400 vs. ExPASy TrEMBL
Match: A0A1S3BYY1 (uncharacterized protein LOC103494706 OS=Cucumis melo OX=3656 GN=LOC103494706 PE=4 SV=1)

HSP 1 Score: 332 bits (852), Expect = 5.32e-115
Identity = 163/172 (94.77%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           METLKKATIS  FL AIFSFS SSRSILHQPHPQPLES KINNTQNA SCSYTVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGWKVDKVTISSYSS+SVTFNYNSKIPNDVWFGFNFCSG QAVESTAAM
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of CsGy4G001400 vs. ExPASy TrEMBL
Match: A0A5D3E2M7 (Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001710 PE=4 SV=1)

HSP 1 Score: 329 bits (844), Expect = 8.82e-114
Identity = 162/172 (94.19%), Postives = 164/172 (95.35%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           METLKKATIS  FL AIFSFS SSRSILHQPHPQPLES KINNTQNA SCSYTVTIKTSC
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPHPQPLESFKINNTQNARSCSYTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSPAYTRDYISIAF DAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQ+CYVYLYR
Sbjct: 61  SSPAYTRDYISIAFRDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGWKVDKVTISSYSS+SVTFNYNSKIPNDVWFGFNFCSG QAVESTAAM
Sbjct: 121 SGYDGWKVDKVTISSYSSRSVTFNYNSKIPNDVWFGFNFCSGHQAVESTAAM 172

[Close]

BLAST of CsGy4G001400 vs. ExPASy TrEMBL
Match: A0A6J1DJC6 (embryo-specific protein ATS3B-like OS=Momordica charantia OX=3673 GN=LOC111021062 PE=4 SV=1)

HSP 1 Score: 286 bits (733), Expect = 7.36e-97
Identity = 137/172 (79.65%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   METLKKATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSC 60
           ME  K + ISLYFL A+F+FS  S SI+HQ  P PLES KINNTQNAGSCS+TVTIKTSC
Sbjct: 1   MEAXKISAISLYFLFALFTFSECSTSIVHQLQPHPLESFKINNTQNAGSCSFTVTIKTSC 60

Query: 61  SSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYR 120
           SSP YTRD ISI+FGDAYGNQVY+PRIDDPSSRAFERCSTDR+D+KGPCTYQICYVYLYR
Sbjct: 61  SSPVYTRDRISISFGDAYGNQVYLPRIDDPSSRAFERCSTDRFDIKGPCTYQICYVYLYR 120

Query: 121 SGYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSGRQAVESTAAM 172
           SGYDGW VDKVTIS Y++++VTFNYNS+IPND+WFGFN CS  QAVESTAA+
Sbjct: 121 SGYDGWTVDKVTISGYNTRTVTFNYNSRIPNDIWFGFNVCSPYQAVESTAAV 172

[Close]

BLAST of CsGy4G001400 vs. TAIR 10
Match: AT5G62200.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 177.6 bits (449), Expect = 8.9e-45
Identity = 86/160 (53.75%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 7   ATISLYFLLAIFSF----SGSSRSILHQPHPQPLESSKINNTQNAG-SCSYTVTIKTSCS 66
           A++ L+F L  F F    S     +L  PH    ES  ++  Q  G +C+YTV I TSCS
Sbjct: 2   ASVRLFFTLISFVFIISTSVYESKVLDPPH--VAESFNVSLIQKLGNTCAYTVIISTSCS 61

Query: 67  SPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYRS 126
           S  YTRD IS+AFGD YGNQ+Y PR+DDPS++ FE+CS+D + + GPCTYQICYVYLYRS
Sbjct: 62  STRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRS 121

Query: 127 GYDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCS 162
           G DGW  + V I S+ SK+VTF YN+ +P  VW+GFN+C+
Sbjct: 122 GPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCN 159

[Close]

BLAST of CsGy4G001400 vs. TAIR 10
Match: AT2G41475.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-42
Identity = 85/160 (53.12%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 4   LKKATISLYFLLAIFSFSGSSRSILHQPHPQPLES-SKINNTQNAGSCSYTVTIKTSCSS 63
           L+ A     F L  F+   S+RS +    P P++S       +NA +CSYTV IKTSCSS
Sbjct: 2   LRLAIPLFLFALCSFTLFSSARSFI-TTKPLPIDSFIPKPKLENAAACSYTVIIKTSCSS 61

Query: 64  PAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQICYVYLYRSG 123
            +YTRD ISI+FGD YGN+VYV R+DDPSSR FE+CS+D Y + GPC   +CY+YL R G
Sbjct: 62  VSYTRDKISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQG 121

Query: 124 YDGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCSG 163
            DGWK + V I   S +SVTF YN  +PN VW+GFN C+G
Sbjct: 122 SDGWKPENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCNG 160

[Close]

BLAST of CsGy4G001400 vs. TAIR 10
Match: AT5G62210.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-29
Identity = 64/158 (40.51%), Postives = 92/158 (58.23%), Query Frame = 0


Query: 6   KATISLYFLLAIFSFSGSSRSILHQPHPQPLESSKINNTQNAGSCSYTVTIKTSCSSPAY 65
           + ++S   LL +  F+    S+  +P    L+           SC YTV + TSC SP +
Sbjct: 2   ECSLSSILLLLVLCFTHPIPSLTFEPLISSLD------LHEEESCPYTVIVTTSCFSPDW 61

Query: 66  TRDYISIAFGDAYGNQVYVPRIDDPSS--RAFERCSTDRYDLKGPCTYQICYVYLYRSGY 125
           +RD ++IA GDA  NQV  PR+D P S    FE+CS+D + +KG C   IC VY+YRSG 
Sbjct: 62  SRDQVTIALGDADDNQVVAPRLDKPLSGGGGFEKCSSDTFQVKGKCLNTICSVYIYRSGT 121

Query: 126 DGWKVDKVTISSYSSKSVTFNYNSKIPNDVWFGFNFCS 162
           DGW  + V I    SKSV F++N  +P ++W+G N+C+
Sbjct: 122 DGWIPETVEIYKEGSKSVKFDFNKNVPENIWYGNNYCN 153

[Close]

BLAST of CsGy4G001400 vs. TAIR 10
Match: AT5G07190.1 (seed gene 3 )

HSP 1 Score: 102.1 bits (253), Expect = 4.7e-22
Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 48  GSCSYTVTIKTSCSSPAYTRDYISIAFGDAYGNQVYVPRIDD--PSSRAFERCSTDRYDL 107
           G+C YTV + TSC SP  TRD ISI FGDA GN+VY P++           +CST+ + +
Sbjct: 32  GTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTFQV 91

Query: 108 KGPCTYQ-ICYVYLYRSGYDGWKVDKVTISSYSSKSVTFNYNSKIPN-DVWFGFNFCS 162
           +G C    IC +Y+ R+G DGW  + + I S  SKSV F+++  +P  + W+G N C+
Sbjct: 92  RGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNCN 149

[Close]

BLAST of CsGy4G001400 vs. TAIR 10
Match: AT5G07190.2 (seed gene 3 )

HSP 1 Score: 102.1 bits (253), Expect = 4.7e-22
Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 48  GSCSYTVTIKTSCSSPAYTRDYISIAFGDAYGNQVYVPRIDD--PSSRAFERCSTDRYDL 107
           G+C YTV + TSC SP  TRD ISI FGDA GN+VY P++           +CST+ + +
Sbjct: 4   GTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTFQV 63

Query: 108 KGPCTYQ-ICYVYLYRSGYDGWKVDKVTISSYSSKSVTFNYNSKIPN-DVWFGFNFCS 162
           +G C    IC +Y+ R+G DGW  + + I S  SKSV F+++  +P  + W+G N C+
Sbjct: 64  RGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNCN 121

The following BLAST results are available for this feature:

BLAST of CsGy4G001400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPM5	1.2e-43	53.75	Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1	[more]
Q681K2	2.0e-41	53.13	Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1	[more]
Q9LYP6	6.7e-21	42.37	Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1	[more]

BLAST of CsGy4G001400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152204.1	5.25e-122	100.00	embryo-specific protein ATS3B [Cucumis sativus] >KGN52886.1 hypothetical protein...	[more]
XP_008454243.1	1.10e-114	94.77	PREDICTED: uncharacterized protein LOC103494706 [Cucumis melo] >KAA0044438.1 emb...	[more]
TYK29565.1	1.82e-113	94.19	embryo-specific protein ATS3A [Cucumis melo var. makuwa]	[more]
XP_038883265.1	1.01e-110	91.86	embryo-specific protein ATS3B-like [Benincasa hispida]	[more]
XP_022153592.1	1.52e-96	79.65	embryo-specific protein ATS3B-like [Momordica charantia]	[more]

BLAST of CsGy4G001400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYF3	2.54e-122	100.00	FBA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G004950 PE=4 SV...	[more]
A0A5A7TNJ2	5.32e-115	94.77	Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3BYY1	5.32e-115	94.77	uncharacterized protein LOC103494706 OS=Cucumis melo OX=3656 GN=LOC103494706 PE=...	[more]
A0A5D3E2M7	8.82e-114	94.19	Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1DJC6	7.36e-97	79.65	embryo-specific protein ATS3B-like OS=Momordica charantia OX=3673 GN=LOC11102106...	[more]

BLAST of CsGy4G001400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62200.1	8.9e-45	53.75	Embryo-specific protein 3, (ATS3)	[more]
AT2G41475.1	1.4e-42	53.13	Embryo-specific protein 3, (ATS3)	[more]
AT5G62210.1	2.3e-29	40.51	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.1	4.7e-22	42.37	seed gene 3	[more]
AT5G07190.2	4.7e-22	42.37	seed gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 43..160 e-value: 1.5E-49 score: 167.0
None	No IPR available	GENE3D	2.60.60.20	PLAT/LH2 domain	coord: 47..155 e-value: 1.7E-10 score: 42.9
None	No IPR available	PANTHER	PTHR31718:SF32	EMBRYO-SPECIFIC PROTEIN ATS3B	coord: 9..168
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 9..168
None	No IPR available	CDD	cd00113	PLAT	coord: 50..160 e-value: 4.05333E-29 score: 102.032
IPR007397	F-box associated (FBA) domain	PROSITE	PS51114	FBA	coord: 94..172 score: 8.50064
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 48..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G001400.2	CsGy4G001400.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding