CsGy3G041470 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G041470
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionEthylene-responsive transcription factor SHINE 2-like
LocationGy14Chr3: 38763869 .. 38765124 (+)
RNA-Seq ExpressionCsGy3G041470
SyntenyCsGy3G041470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTGGTTGCAAATTGCTCTGTTACTCTCATTTTCTGTCTCCTGCCCATAACGTGTTTGTTGATTTGCTTGGAATAAACTTTGGCGTCTGTGGCGGCGGATATTTTTGCAGATTTGTACAACCCAATTGTTGTATGTATGTGGGTTATTTGGCTTGTGTTTGTTGGTTCAAACATGCTTTGAAACCCCATATCTTTTTTTGGTTGTCCGTAATTTGTTTGATGATTTGCCTGAAAGGAGTTGTAGATTTGTATTTCTCTGCTGTAAATGTATGCATTGCTTGTGTTTGTTGGTTCAAATGAAGTTATGAAAAAGTGAATTTTCCCGTTTTCTTTCTTATGCCTTCAACGAAGTTTGATGGCCATTAGGCATGCTTAATTGTTTCTGCTCTACATTGCACATTGAGCCTATATTCTTATATTGTTCATGTGATTATTTCTTTGTAGGAAGAGAAGGGTGTGGCTAGGGACATTCGACACGGCGGAGGATGCAGCACGAGCGTACGATCAAGCAGCCATTTTAATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCACTCTGAAGAAGCCAGCCATGGCCATGGTTCTTCTCCAATGTCTCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCTTCCTTGACATGCCTACGACTCGACTGTGACAACGCTCATATCGGTGTATGGCAGAAGCGTGCAGGCACTCGAGCCACTTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGGTACCTTCGCCTGAATCGACAAGCCAAGAAGCCGATGGCGATGGCGATGGCGATGGTGATGACCACCAAAATGAAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAACTTCCAGCTAAGTACAGGATCTCAACACAAAACTCTACTCCCAAAATTTAAAAATAAAAAAATAACACCCATTAGATTAAAACAAAGAGGCTTAATTAATCTGTGTTTGACTGTCTATGTGTGTATGTATATATTCATATATGTTTTTATTCCTATTTTTCTGTTACTTTCAGCTTATATATAAAGCTGTTTATGGGACTTGGGAAGCTCAAAATCTGTATAGAGACGGAGCTTTTGCATATACATAAGTTTGCTGTTTTATGTCATCTTTTGTAATTCACATATATATATTTGGAAAAGGTATATATAATATAAAG

mRNA sequence

CACTGGTTGCAAATTGCTCTGTTACTCTCATTTTCTGTCTCCTGCCCATAACGTGTTTGTTGATTTGCTTGGAATAAACTTTGGCGTCTGTGGCGGCGGATATTTTTGCAGATTTGTACAACCCAATTGTTGAAGAGAAGGGTGTGGCTAGGGACATTCGACACGGCGGAGGATGCAGCACGAGCGTACGATCAAGCAGCCATTTTAATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCACTCTGAAGAAGCCAGCCATGGCCATGGTTCTTCTCCAATGTCTCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCTTCCTTGACATGCCTACGACTCGACTGTGACAACGCTCATATCGGTGTATGGCAGAAGCGTGCAGGCACTCGAGCCACTTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGGTACCTTCGCCTGAATCGACAAGCCAAGAAGCCGATGGCGATGGCGATGGCGATGGTGATGACCACCAAAATGAAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAACTTCCAGCTAAGTACAGGATCTCAACACAAAACTCTACTCCCAAAATTTAAAAATAAAAAAATAACACCCATTAGATTAAAACAAAGAGGCTTAATTAATCTGTGTTTGACTGTCTATGTGTGTATGTATATATTCATATATGTTTTTATTCCTATTTTTCTGTTACTTTCAGCTTATATATAAAGCTGTTTATGGGACTTGGGAAGCTCAAAATCTGTATAGAGACGGAGCTTTTGCATATACATAAGTTTGCTGTTTTATGTCATCTTTTGTAATTCACATATATATATTTGGAAAAGGTATATATAATATAAAG

Coding sequence (CDS)

ATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCACTCTGAAGAAGCCAGCCATGGCCATGGTTCTTCTCCAATGTCTCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCTTCCTTGACATGCCTACGACTCGACTGTGACAACGCTCATATCGGTGTATGGCAGAAGCGTGCAGGCACTCGAGCCACTTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGGTACCTTCGCCTGAATCGACAAGCCAAGAAGCCGATGGCGATGGCGATGGCGATGGTGATGACCACCAAAATGAAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAACTTCCAGCTAA

Protein sequence

MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDCDNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEEDRIAMQMIEELLNWNCPLPSTSS*
Homology
BLAST of CsGy3G041470 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 74/153 (48.37%), Postives = 97/153 (63.40%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHG--------SSPMSPKALSELLSTKLRKCCKNPSPS 60
           M+G+NAKTNFP + +++ E S G          SS  S  +LS +LS KLRKCCK+PSPS
Sbjct: 53  MSGRNAKTNFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPS 112

Query: 61  LTCLRLDCDNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGD---- 120
           LTCLRLD  ++HIGVWQKRAG+++ S+WVM +ELG      P S+SQE       D    
Sbjct: 113 LTCLRLDTASSHIGVWQKRAGSKSDSSWVMTVELG------PASSSQETTSKASQDAILA 172

Query: 121 -------GDDHQNEIDEEDRIAMQMIEELLNWN 135
                  G   +  +DEE+++A+QMIEELLN N
Sbjct: 173 PTTEVEIGGSREEVLDEEEKVALQMIEELLNTN 199

BLAST of CsGy3G041470 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28
Identity = 74/139 (53.24%), Postives = 94/139 (67.63%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEAS---HGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLR 60
           MNGQNAKTNFP  K  SEE S       S  MSPK+LSELL+ KLRK CK+ +PSLTCLR
Sbjct: 53  MNGQNAKTNFPVVK--SEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLR 112

Query: 61  LDCDNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNE-- 120
           LD D++HIGVWQKRAG++ +  WVMR+ELG     S            + + ++ + E  
Sbjct: 113 LDTDSSHIGVWQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAI 172

Query: 121 IDEEDRIAMQMIEELLNWN 135
           I +ED++AM+MIEELLNW+
Sbjct: 173 ISDEDQLAMEMIEELLNWS 189

BLAST of CsGy3G041470 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQ+AKTNFP  K +    S    S+  SPK+LSELL+ KLRK CK+ +P LTCLRLD 
Sbjct: 53  MNGQSAKTNFPVIKSNGSN-SLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDN 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNE-IDEE 120
           D++HIGVWQKRAG++ + NWV  +ELG K    P        GD + +    +NE + E+
Sbjct: 113 DSSHIGVWQKRAGSKTSPNWVKLVELGDKVNARP-------GGDIETNKMKVRNEDVQED 172

Query: 121 DRIAMQMIEELLNWNCP 137
           D++AMQMIEELLNW CP
Sbjct: 173 DQMAMQMIEELLNWTCP 181

BLAST of CsGy3G041470 vs. NCBI nr
Match: XP_004136348.1 (ethylene-responsive transcription factor SHINE 2 [Cucumis sativus] >XP_011652482.1 ethylene-responsive transcription factor SHINE 2 [Cucumis sativus] >KGN60101.1 hypothetical protein Csa_000793 [Cucumis sativus])

HSP 1 Score: 287 bits (734), Expect = 6.73e-97
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC
Sbjct: 53  MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEED 120
           DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEED
Sbjct: 113 DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEED 172

Query: 121 RIAMQMIEELLNWNCPLPSTSS 142
           RIAMQMIEELLNWNCPLPSTSS
Sbjct: 173 RIAMQMIEELLNWNCPLPSTSS 194

BLAST of CsGy3G041470 vs. NCBI nr
Match: KAA0038810.1 (ethylene-responsive transcription factor SHINE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 256 bits (654), Expect = 8.79e-85
Identity = 133/143 (93.01%), Postives = 133/143 (93.01%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKD SEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLD 
Sbjct: 53  MNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTS-QEADGDGDGDGDDHQNEIDEE 120
           D AHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTS QEAD      GDDHQNEIDEE
Sbjct: 113 DTAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSCQEAD------GDDHQNEIDEE 172

Query: 121 DRIAMQMIEELLNWNCPLPSTSS 142
           DRIAMQMIEELLNWNCPLPSTSS
Sbjct: 173 DRIAMQMIEELLNWNCPLPSTSS 189

BLAST of CsGy3G041470 vs. NCBI nr
Match: XP_008466408.1 (PREDICTED: ethylene-responsive transcription factor SHINE 2-like [Cucumis melo] >XP_008466410.1 PREDICTED: ethylene-responsive transcription factor SHINE 2-like [Cucumis melo] >TYK31433.1 ethylene-responsive transcription factor SHINE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 1.45e-83
Identity = 132/143 (92.31%), Postives = 132/143 (92.31%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKD SEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLD 
Sbjct: 53  MNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTS-QEADGDGDGDGDDHQNEIDEE 120
           D AHIGVWQKRAGTRATSNWVMRIELGKKEVPS ESTS QEAD      GDDHQNEIDEE
Sbjct: 113 DTAHIGVWQKRAGTRATSNWVMRIELGKKEVPSSESTSCQEAD------GDDHQNEIDEE 172

Query: 121 DRIAMQMIEELLNWNCPLPSTSS 142
           DRIAMQMIEELLNWNCPLPSTSS
Sbjct: 173 DRIAMQMIEELLNWNCPLPSTSS 189

BLAST of CsGy3G041470 vs. NCBI nr
Match: XP_038899932.1 (ethylene-responsive transcription factor SHINE 2-like isoform X4 [Benincasa hispida] >XP_038899933.1 ethylene-responsive transcription factor SHINE 2-like isoform X4 [Benincasa hispida] >XP_038899934.1 ethylene-responsive transcription factor SHINE 2-like isoform X4 [Benincasa hispida])

HSP 1 Score: 249 bits (635), Expect = 7.12e-82
Identity = 129/144 (89.58%), Postives = 131/144 (90.97%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKD SEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLD 
Sbjct: 53  MNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSP----ESTSQEADGDGDGDGDDHQNEI 120
           DNAHIGVWQKRAGTRATSNWVMRIELGKK+VPSP    ESTSQEADGDG      H+N I
Sbjct: 113 DNAHIGVWQKRAGTRATSNWVMRIELGKKDVPSPSPSPESTSQEADGDG------HRNGI 172

Query: 121 DEEDRIAMQMIEELLNWNCPLPST 140
           DEEDRIAMQMIEELLNWNCPLPST
Sbjct: 173 DEEDRIAMQMIEELLNWNCPLPST 190

BLAST of CsGy3G041470 vs. NCBI nr
Match: XP_038899931.1 (ethylene-responsive transcription factor SHINE 2-like isoform X3 [Benincasa hispida])

HSP 1 Score: 249 bits (635), Expect = 1.18e-81
Identity = 129/144 (89.58%), Postives = 131/144 (90.97%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKD SEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLD 
Sbjct: 68  MNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 127

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSP----ESTSQEADGDGDGDGDDHQNEI 120
           DNAHIGVWQKRAGTRATSNWVMRIELGKK+VPSP    ESTSQEADGDG      H+N I
Sbjct: 128 DNAHIGVWQKRAGTRATSNWVMRIELGKKDVPSPSPSPESTSQEADGDG------HRNGI 187

Query: 121 DEEDRIAMQMIEELLNWNCPLPST 140
           DEEDRIAMQMIEELLNWNCPLPST
Sbjct: 188 DEEDRIAMQMIEELLNWNCPLPST 205

BLAST of CsGy3G041470 vs. ExPASy TrEMBL
Match: A0A0A0LJA8 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878210 PE=4 SV=1)

HSP 1 Score: 287 bits (734), Expect = 3.26e-97
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC
Sbjct: 53  MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEED 120
           DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEED
Sbjct: 113 DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNEIDEED 172

Query: 121 RIAMQMIEELLNWNCPLPSTSS 142
           RIAMQMIEELLNWNCPLPSTSS
Sbjct: 173 RIAMQMIEELLNWNCPLPSTSS 194

BLAST of CsGy3G041470 vs. ExPASy TrEMBL
Match: A0A5A7T6E0 (Ethylene-responsive transcription factor SHINE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003670 PE=4 SV=1)

HSP 1 Score: 256 bits (654), Expect = 4.25e-85
Identity = 133/143 (93.01%), Postives = 133/143 (93.01%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKD SEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLD 
Sbjct: 53  MNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTS-QEADGDGDGDGDDHQNEIDEE 120
           D AHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTS QEAD      GDDHQNEIDEE
Sbjct: 113 DTAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSCQEAD------GDDHQNEIDEE 172

Query: 121 DRIAMQMIEELLNWNCPLPSTSS 142
           DRIAMQMIEELLNWNCPLPSTSS
Sbjct: 173 DRIAMQMIEELLNWNCPLPSTSS 189

BLAST of CsGy3G041470 vs. ExPASy TrEMBL
Match: A0A1S3CR71 (ethylene-responsive transcription factor SHINE 2-like OS=Cucumis melo OX=3656 GN=LOC103503822 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 7.04e-84
Identity = 132/143 (92.31%), Postives = 132/143 (92.31%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKD SEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLD 
Sbjct: 53  MNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTS-QEADGDGDGDGDDHQNEIDEE 120
           D AHIGVWQKRAGTRATSNWVMRIELGKKEVPS ESTS QEAD      GDDHQNEIDEE
Sbjct: 113 DTAHIGVWQKRAGTRATSNWVMRIELGKKEVPSSESTSCQEAD------GDDHQNEIDEE 172

Query: 121 DRIAMQMIEELLNWNCPLPSTSS 142
           DRIAMQMIEELLNWNCPLPSTSS
Sbjct: 173 DRIAMQMIEELLNWNCPLPSTSS 189

BLAST of CsGy3G041470 vs. ExPASy TrEMBL
Match: A0A5D3E5T0 (Ethylene-responsive transcription factor SHINE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007440 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 7.04e-84
Identity = 132/143 (92.31%), Postives = 132/143 (92.31%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKD SEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLD 
Sbjct: 53  MNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTS-QEADGDGDGDGDDHQNEIDEE 120
           D AHIGVWQKRAGTRATSNWVMRIELGKKEVPS ESTS QEAD      GDDHQNEIDEE
Sbjct: 113 DTAHIGVWQKRAGTRATSNWVMRIELGKKEVPSSESTSCQEAD------GDDHQNEIDEE 172

Query: 121 DRIAMQMIEELLNWNCPLPSTSS 142
           DRIAMQMIEELLNWNCPLPSTSS
Sbjct: 173 DRIAMQMIEELLNWNCPLPSTSS 189

BLAST of CsGy3G041470 vs. ExPASy TrEMBL
Match: A0A6J1FE08 (ethylene-responsive transcription factor SHINE 3 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111443124 PE=4 SV=1)

HSP 1 Score: 241 bits (614), Expect = 2.52e-79
Identity = 125/146 (85.62%), Postives = 128/146 (87.67%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQNAKTNFPASKD S EASHGHGSSPM+PKALSELLSTKLRKCCKNPSPSLTCLRLD 
Sbjct: 30  MNGQNAKTNFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDS 89

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSP----ESTSQEADGDGDGDGDDHQNEI 120
           DNAHIGVWQKRAGTRATSNWVMRIELGKKE+PSP    ESTSQE DG        H+N I
Sbjct: 90  DNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDG--------HRNGI 149

Query: 121 DEEDRIAMQMIEELLNWNCPLPSTSS 142
           DEEDRIAMQMIEELLNWNCPLPS SS
Sbjct: 150 DEEDRIAMQMIEELLNWNCPLPSISS 167

BLAST of CsGy3G041470 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29
Identity = 74/153 (48.37%), Postives = 97/153 (63.40%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHG--------SSPMSPKALSELLSTKLRKCCKNPSPS 60
           M+G+NAKTNFP + +++ E S G          SS  S  +LS +LS KLRKCCK+PSPS
Sbjct: 53  MSGRNAKTNFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPS 112

Query: 61  LTCLRLDCDNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGD---- 120
           LTCLRLD  ++HIGVWQKRAG+++ S+WVM +ELG      P S+SQE       D    
Sbjct: 113 LTCLRLDTASSHIGVWQKRAGSKSDSSWVMTVELG------PASSSQETTSKASQDAILA 172

Query: 121 -------GDDHQNEIDEEDRIAMQMIEELLNWN 135
                  G   +  +DEE+++A+QMIEELLN N
Sbjct: 173 PTTEVEIGGSREEVLDEEEKVALQMIEELLNTN 199

BLAST of CsGy3G041470 vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 5.6e-29
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQ+AKTNFP  K +    S    S+  SPK+LSELL+ KLRK CK+ +P LTCLRLD 
Sbjct: 50  MNGQSAKTNFPVIKSNGSN-SLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDN 109

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNE-IDEE 120
           D++HIGVWQKRAG++ + NWV  +ELG K    P        GD + +    +NE + E+
Sbjct: 110 DSSHIGVWQKRAGSKTSPNWVKLVELGDKVNARP-------GGDIETNKMKVRNEDVQED 169

Query: 121 DRIAMQMIEELLNWNCP 137
           D++AMQMIEELLNW CP
Sbjct: 170 DQMAMQMIEELLNWTCP 178

BLAST of CsGy3G041470 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 5.6e-29
Identity = 74/139 (53.24%), Postives = 94/139 (67.63%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEAS---HGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLR 60
           MNGQNAKTNFP  K  SEE S       S  MSPK+LSELL+ KLRK CK+ +PSLTCLR
Sbjct: 53  MNGQNAKTNFPVVK--SEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLR 112

Query: 61  LDCDNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNE-- 120
           LD D++HIGVWQKRAG++ +  WVMR+ELG     S            + + ++ + E  
Sbjct: 113 LDTDSSHIGVWQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAI 172

Query: 121 IDEEDRIAMQMIEELLNWN 135
           I +ED++AM+MIEELLNW+
Sbjct: 173 ISDEDQLAMEMIEELLNWS 189

BLAST of CsGy3G041470 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 5.6e-29
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 0

Query: 1   MNGQNAKTNFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDC 60
           MNGQ+AKTNFP  K +    S    S+  SPK+LSELL+ KLRK CK+ +P LTCLRLD 
Sbjct: 53  MNGQSAKTNFPVIKSNGSN-SLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDN 112

Query: 61  DNAHIGVWQKRAGTRATSNWVMRIELGKKEVPSPESTSQEADGDGDGDGDDHQNE-IDEE 120
           D++HIGVWQKRAG++ + NWV  +ELG K    P        GD + +    +NE + E+
Sbjct: 113 DSSHIGVWQKRAGSKTSPNWVKLVELGDKVNARP-------GGDIETNKMKVRNEDVQED 172

Query: 121 DRIAMQMIEELLNWNCP 137
           D++AMQMIEELLNW CP
Sbjct: 173 DQMAMQMIEELLNWTCP 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9XI331.6e-2848.37Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9LFN77.9e-2853.24Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702... [more]
Q3E9587.9e-2853.28Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
XP_004136348.16.73e-97100.00ethylene-responsive transcription factor SHINE 2 [Cucumis sativus] >XP_011652482... [more]
KAA0038810.18.79e-8593.01ethylene-responsive transcription factor SHINE 2-like [Cucumis melo var. makuwa][more]
XP_008466408.11.45e-8392.31PREDICTED: ethylene-responsive transcription factor SHINE 2-like [Cucumis melo] ... [more]
XP_038899932.17.12e-8289.58ethylene-responsive transcription factor SHINE 2-like isoform X4 [Benincasa hisp... [more]
XP_038899931.11.18e-8189.58ethylene-responsive transcription factor SHINE 2-like isoform X3 [Benincasa hisp... [more]
Match NameE-valueIdentityDescription
A0A0A0LJA83.26e-97100.00AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878210 PE=... [more]
A0A5A7T6E04.25e-8593.01Ethylene-responsive transcription factor SHINE 2-like OS=Cucumis melo var. makuw... [more]
A0A1S3CR717.04e-8492.31ethylene-responsive transcription factor SHINE 2-like OS=Cucumis melo OX=3656 GN... [more]
A0A5D3E5T07.04e-8492.31Ethylene-responsive transcription factor SHINE 2-like OS=Cucumis melo var. makuw... [more]
A0A6J1FE082.52e-7985.62ethylene-responsive transcription factor SHINE 3 isoform X3 OS=Cucurbita moschat... [more]
Match NameE-valueIdentityDescription
AT1G15360.11.1e-2948.37Integrase-type DNA-binding superfamily protein [more]
AT5G25390.15.6e-2953.28Integrase-type DNA-binding superfamily protein [more]
AT5G11190.15.6e-2953.24Integrase-type DNA-binding superfamily protein [more]
AT5G25390.25.6e-2953.28Integrase-type DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..121
NoneNo IPR availablePANTHERPTHR31194:SF13ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2coord: 1..140
NoneNo IPR availablePANTHERPTHR31194SHN SHINE , DNA BINDING / TRANSCRIPTION FACTORcoord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G041470.2CsGy3G041470.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity