CsGy3G040990 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G040990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	transcriptional regulator ATRX homolog
Location	Gy14Chr3: 38352359 .. 38355147 (+)
RNA-Seq Expression	CsGy3G040990
Synteny	CsGy3G040990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATAATTGGGTAAACCAAGAACAAAGAAATATAGGAGTAGGAGTAGGGCACTAATTCCCCAAAAGAATCAAAGCCACTGGCGGGTTTCTTAATTTTCATCCCAAATTTTTTCAAAACGCTTTTCTTTCCTTTCCTAATCCCCAGTGTTCTTCCTTCCAAGTCCTATACTCCACAACACTCAACCACTTCACCACCATAGATTTCTTCCAACAAACCCTTTGATTTTGTTTCTGTTCCTAGAATGTCTTCTCAAGATCAAAAGCCGCTAAAGAAAGCCAAACCGGAGCTGGACGATTCCGATGACGGAATGAGCCTCGGTGCCCTTTTGCAAGAAAAGAGGAAGAAACTCTTAAATGTGGGTTCTAAACTTCTCTCAAAGCCCAAGAAGGAAGAACTTCAGGGAGTTGATGGGTTGGGAAAATCTCCCAAAATAGATTCTGGGTCTGCTCCAAAGGGCTTCAAGGTTAAGAAAGAAGAGCGTTTCAACACTGTTGATGATGGTTTTGACGATAAGCCTGCTAAAAAGAGCTCTGTTGCCAAACGTGATACGGTTCATACATCTTTCTATTTAGTCTTTTTTTTCTTCGCATTTTGCTTCTGTTACTGTTTGGATTAGTGAGTGTTCGAAAGTAGAGATATTGATGTAGTAGACAATAATAGGGAGTTTTATTAGTATGGTTCTGGAGATTTTTAGCAATGTGCATCTCTAGCATGTGGAATTTGAATGATTGTTAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCATTTTTCTCAAAGTTTCTAGCGCAGAATTTTGGTTCGTGTTGTTATATTTTCCTTTTTATACACAATGGAAGTTATTAACATGTTTGCGTTTTGAATGGGCTGGGGAGACAGGAATTGAAGAAGAAGAAGAAAGTGAAGGAGGAGGAGAAGAGCAAGAGCTCCAAGGAGTTGGAGAGCCTGATAAAAGATAGAAAACAAAAGAAGGTATATGATTTGCCTGGTCAGAAGCGAGATCCTCCAGAAGAGGTATTATATGTTCATGTTCTATTTTAGTTTTGGTGGGATCAATTTTCTGTTTGAGAATTCTTTAGCTGATGCTCTTCATGTGCTCTTGGTTATTCAGAGAGATCCGCTGAGAATTTTCTATGAATCGCTCCACAAGCAACTTCCCCACAGTGAAATGGCACAGTTTTGGTAAGAAATTTGCCTCTAATTGTTTTTCCTATGATATAATCAACTATGTGATTTTGTTGGGTTGCATTAGTAGTTTTGATTCCTTGATGATGTTTTGTTTTGATTGAAATTATGGATTGCTTATTGCCTACAAGAACAAAGATGTTTTTTTGTGGGCTAAAGTTTCTAAGAACACTCTAGTAGACTACTTTTACTGGTTGAGTTTCTTACTTCCCAATAGAGTTTATCCCGTCATGAATATGTTTCCAAGTTCTCATGGATGGAACTAATTTGGTGGCTACATCACGAAAGATGTTAAATTAGTTGTCTTCATGTTACTGCATACCCAGTACCTAGTTACATTGGAGCAACTCATATTGATCTGGATGGTCGGATGGTTTCTGTTACCCAACATAAAATTTATACTGCAAAGTAGACATTGATTTAATTAATGCAGTCTTTATCAACAAGAAACTAGCAGTGACAACTTTGGATGATCTATATTATCTGTACATAACCATCTCATATATCAAACACGGGGAGTTGTACACAACACAACACATTGAGTTTTTTATCCCATCAACTTCTGTTTTACGTGTGAAGTGTTGTTTTTATCATATAGCTTTAAATTTTAATTGTATAGAGAAAAAGGAAGAATGAATGAAAATCCTGGAGTGTACACACTTGTTAACTGAAACTAAGGAGTTGTATCTTTATATTTTCTGTAGTCGCCAATGGTGGCCTCAGCTTTATCTCTATCTTCCACTTTGGAAGTTTTCTTTCGGTATTCTGCGTGAACTAAGAACTAAAAAAGGGAAATTACCCTATTAACTCACTATCTCATCTGTTACATTTTTAATGAGGCCCAGAATCCCTCTACATAATGTTCTGCAGATATTGTGAATCCTAAGCTGAAAAGTACACTAAAGTCTAAACAAATTCTTTGCAGTGTCTGATCATATTGAATCTGTTTTTCTTCTTCAAACAAAACGGTAATGGAATGGGATTCAGTTTGTTGTTCATTAATGCTTATAATTGTGGTCTTGTGTGGATGGATGAATTTACAGGATGATGGAGTATGGTTTGTTATCCAAAGAAGAAGCAAAGAAAGTTTTTGAAAAGAAGCAGAAAAAGGCACCATTGCAAAAACTGAGCTCCCCAATGAAGCCTGTGAGTGCTGTAAAGAGCGTGACGAAGACCGCCATTGTCAAGAAAACTGTCCAATCTTCTCCACTCTCTTCAAATAGAACGACAAAAGTGGACTCCAAAGTCGTTACAAAACTGTCGAAGAAGCGCAAGTCCAAAGATGACAGTTCTGAAGATGAATCAGACGACTACTTTATCAGTCAAAGCATAAAAAAGAAGCAAAGAGCAGCCTAATTCACGTGTAAATGAACAAACCCTTCTATTCAGAAGCTCATTTTTAATTTCTGATTAGTTCCAAAACATTGCATCAACGTTTTAATGATATTGACACTCATCTGGTCATTTTTCTCCCACAATGTATGTGTACATATAACTTCATAACTATTTACTGTTCTTGTGCCTGATCCTAGACCTCACTTGCTAGTGGAGCAATTAGAAATAGAAGGTTCTTATTATACATTCAATGTTGATATTGTTATGAAC

mRNA sequence

TTATAATTGGGTAAACCAAGAACAAAGAAATATAGGAGTAGGAGTAGGGCACTAATTCCCCAAAAGAATCAAAGCCACTGGCGGGTTTCTTAATTTTCATCCCAAATTTTTTCAAAACGCTTTTCTTTCCTTTCCTAATCCCCAGTGTTCTTCCTTCCAAGTCCTATACTCCACAACACTCAACCACTTCACCACCATAGATTTCTTCCAACAAACCCTTTGATTTTGTTTCTGTTCCTAGAATGTCTTCTCAAGATCAAAAGCCGCTAAAGAAAGCCAAACCGGAGCTGGACGATTCCGATGACGGAATGAGCCTCGGTGCCCTTTTGCAAGAAAAGAGGAAGAAACTCTTAAATGTGGGTTCTAAACTTCTCTCAAAGCCCAAGAAGGAAGAACTTCAGGGAGTTGATGGGTTGGGAAAATCTCCCAAAATAGATTCTGGGTCTGCTCCAAAGGGCTTCAAGGTTAAGAAAGAAGAGCGTTTCAACACTGTTGATGATGGTTTTGACGATAAGCCTGCTAAAAAGAGCTCTGTTGCCAAACGTGATACGGAATTGAAGAAGAAGAAGAAAGTGAAGGAGGAGGAGAAGAGCAAGAGCTCCAAGGAGTTGGAGAGCCTGATAAAAGATAGAAAACAAAAGAAGGTATATGATTTGCCTGGTCAGAAGCGAGATCCTCCAGAAGAGAGAGATCCGCTGAGAATTTTCTATGAATCGCTCCACAAGCAACTTCCCCACAGTGAAATGGCACAGTTTTGGATGATGGAGTATGGTTTGTTATCCAAAGAAGAAGCAAAGAAAGTTTTTGAAAAGAAGCAGAAAAAGGCACCATTGCAAAAACTGAGCTCCCCAATGAAGCCTGTGAGTGCTGTAAAGAGCGTGACGAAGACCGCCATTGTCAAGAAAACTGTCCAATCTTCTCCACTCTCTTCAAATAGAACGACAAAAGTGGACTCCAAAGTCGTTACAAAACTGTCGAAGAAGCGCAAGTCCAAAGATGACAGTTCTGAAGATGAATCAGACGACTACTTTATCAGTCAAAGCATAAAAAAGAAGCAAAGAGCAGCCTAATTCACGTGTAAATGAACAAACCCTTCTATTCAGAAGCTCATTTTTAATTTCTGATTAGTTCCAAAACATTGCATCAACGTTTTAATGATATTGACACTCATCTGGTCATTTTTCTCCCACAATGTATGTGTACATATAACTTCATAACTATTTACTGTTCTTGTGCCTGATCCTAGACCTCACTTGCTAGTGGAGCAATTAGAAATAGAAGGTTCTTATTATACATTCAATGTTGATATTGTTATGAAC

Coding sequence (CDS)

ATGTCTTCTCAAGATCAAAAGCCGCTAAAGAAAGCCAAACCGGAGCTGGACGATTCCGATGACGGAATGAGCCTCGGTGCCCTTTTGCAAGAAAAGAGGAAGAAACTCTTAAATGTGGGTTCTAAACTTCTCTCAAAGCCCAAGAAGGAAGAACTTCAGGGAGTTGATGGGTTGGGAAAATCTCCCAAAATAGATTCTGGGTCTGCTCCAAAGGGCTTCAAGGTTAAGAAAGAAGAGCGTTTCAACACTGTTGATGATGGTTTTGACGATAAGCCTGCTAAAAAGAGCTCTGTTGCCAAACGTGATACGGAATTGAAGAAGAAGAAGAAAGTGAAGGAGGAGGAGAAGAGCAAGAGCTCCAAGGAGTTGGAGAGCCTGATAAAAGATAGAAAACAAAAGAAGGTATATGATTTGCCTGGTCAGAAGCGAGATCCTCCAGAAGAGAGAGATCCGCTGAGAATTTTCTATGAATCGCTCCACAAGCAACTTCCCCACAGTGAAATGGCACAGTTTTGGATGATGGAGTATGGTTTGTTATCCAAAGAAGAAGCAAAGAAAGTTTTTGAAAAGAAGCAGAAAAAGGCACCATTGCAAAAACTGAGCTCCCCAATGAAGCCTGTGAGTGCTGTAAAGAGCGTGACGAAGACCGCCATTGTCAAGAAAACTGTCCAATCTTCTCCACTCTCTTCAAATAGAACGACAAAAGTGGACTCCAAAGTCGTTACAAAACTGTCGAAGAAGCGCAAGTCCAAAGATGACAGTTCTGAAGATGAATCAGACGACTACTTTATCAGTCAAAGCATAAAAAAGAAGCAAAGAGCAGCCTAA

Protein sequence

MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGKSPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSSKELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLSKEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKVVTKLSKKRKSKDDSSEDESDDYFISQSIKKKQRAA*

Homology

[Close]

BLAST of CsGy3G040990 vs. NCBI nr
Match: XP_011652451.1 (uncharacterized protein LOC101214860 [Cucumis sativus] >KGN60039.1 hypothetical protein Csa_002503 [Cucumis sativus])

HSP 1 Score: 493 bits (1270), Expect = 5.45e-175
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK
Sbjct: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS
Sbjct: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120

Query: 121 KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS 180
           KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS
Sbjct: 121 KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS 180

Query: 181 KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV 240
           KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV
Sbjct: 181 KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV 240

Query: 241 VTKLSKKRKSKDDSSEDESDDYFISQSIKKKQRAA 275
           VTKLSKKRKSKDDSSEDESDDYFISQSIKKKQRAA
Sbjct: 241 VTKLSKKRKSKDDSSEDESDDYFISQSIKKKQRAA 275

[Close]

BLAST of CsGy3G040990 vs. NCBI nr
Match: XP_008466483.1 (PREDICTED: uncharacterized protein LOC103503875 [Cucumis melo] >TYK31487.1 golgin subfamily A member 6-like protein 22 [Cucumis melo var. makuwa])

HSP 1 Score: 451 bits (1161), Expect = 2.28e-158
Identity = 257/276 (93.12%), Postives = 265/276 (96.01%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEEL GVDGLGK
Sbjct: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELLGVDGLGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPKIDSGSAPKG KVKKEERFN+V+D FD+KPAKKSS AKRDTELKKKKKVKEEEKSKSS
Sbjct: 61  SPKIDSGSAPKGSKVKKEERFNSVNDDFDEKPAKKSSAAKRDTELKKKKKVKEEEKSKSS 120

Query: 121 KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS 180
           KELESL K+RKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMME GLLS
Sbjct: 121 KELESLKKERKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMESGLLS 180

Query: 181 KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV 240
           KEEAK+VFEKKQKKAPLQKLSSPMK VSAVKSVTKTA+VKKTVQSSPLSSNRTTKVDSKV
Sbjct: 181 KEEAKEVFEKKQKKAPLQKLSSPMKTVSAVKSVTKTAVVKKTVQSSPLSSNRTTKVDSKV 240

Query: 241 VTKLSKKRKSKDDSSEDESDD-YFISQSIKKKQRAA 275
           V K SKKRKSKDDSSED+SDD +FISQSIKKK RAA
Sbjct: 241 VMKSSKKRKSKDDSSEDDSDDDFFISQSIKKKARAA 276

[Close]

BLAST of CsGy3G040990 vs. NCBI nr
Match: KAA0063288.1 (golgin subfamily A member 6-like protein 22 [Cucumis melo var. makuwa])

HSP 1 Score: 416 bits (1068), Expect = 1.74e-144
Identity = 239/276 (86.59%), Postives = 247/276 (89.49%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEEL GVDGLGK
Sbjct: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELLGVDGLGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPKIDSGSAPKG KVKKEERFN+V+D FD+KPAKKSS AKRDTEL               
Sbjct: 61  SPKIDSGSAPKGSKVKKEERFNSVNDDFDEKPAKKSSAAKRDTEL--------------- 120

Query: 121 KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS 180
              ESL K+RKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMME GLLS
Sbjct: 121 ---ESLKKERKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMESGLLS 180

Query: 181 KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV 240
           KEEAK+VFEKKQKKAPLQKLSSPMK VSAVKSVTKTA+VKKTVQSSPLSSNRTTKVDSKV
Sbjct: 181 KEEAKEVFEKKQKKAPLQKLSSPMKTVSAVKSVTKTAVVKKTVQSSPLSSNRTTKVDSKV 240

Query: 241 VTKLSKKRKSKDDSSEDESDD-YFISQSIKKKQRAA 275
           V K SKKRKSKDDSSED+SDD +FISQSIKKK RAA
Sbjct: 241 VMKSSKKRKSKDDSSEDDSDDDFFISQSIKKKARAA 258

[Close]

BLAST of CsGy3G040990 vs. NCBI nr
Match: XP_038897144.1 (uncharacterized protein LOC120085300 [Benincasa hispida])

HSP 1 Score: 404 bits (1038), Expect = 1.27e-139
Identity = 234/277 (84.48%), Postives = 254/277 (91.70%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSS+DQKP+KKAK ELD+SDDG+SLGALLQEKRKK  NV SKLLSKPKKEELQGVDG GK
Sbjct: 1   MSSEDQKPIKKAKLELDESDDGISLGALLQEKRKKHFNVASKLLSKPKKEELQGVDGSGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPK+DSGSA KG K+KKEERFN +DD FD+KPAKK S  KRD ELKKKKKVKEEEKSKSS
Sbjct: 61  SPKLDSGSASKGSKLKKEERFNFLDDDFDEKPAKKISATKRDMELKKKKKVKEEEKSKSS 120

Query: 121 K-ELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLL 180
           K EL+SL K+ KQKKVYDLPGQKRDPPEERDPLRIFYE+LH Q+PHSEMAQFWMME GLL
Sbjct: 121 KKELKSLKKETKQKKVYDLPGQKRDPPEERDPLRIFYETLHNQIPHSEMAQFWMMESGLL 180

Query: 181 SKEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSK 240
           SKEEAKKVFEKKQKKAPLQKLSSP+K VSAVKSVTKTAIVKKTVQSS +SS++TTKVDSK
Sbjct: 181 SKEEAKKVFEKKQKKAPLQKLSSPLKTVSAVKSVTKTAIVKKTVQSSSVSSDKTTKVDSK 240

Query: 241 VVTKLSKKRKSKDDSSEDESDDYFI-SQSIKKKQRAA 275
           V+TKLSKKRKSKD+SSED+SDD FI S+SIKKK RAA
Sbjct: 241 VMTKLSKKRKSKDESSEDDSDDDFIISRSIKKKPRAA 277

[Close]

BLAST of CsGy3G040990 vs. NCBI nr
Match: XP_022145662.1 (transcriptional regulator ATRX homolog [Momordica charantia])

HSP 1 Score: 378 bits (970), Expect = 2.81e-129
Identity = 219/277 (79.06%), Postives = 246/277 (88.81%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSS+DQKP+KK+K ELD+ +DGMSLG++ Q K+KKL N GSK LS  KKEELQG DG+GK
Sbjct: 1   MSSEDQKPIKKSKVELDEMEDGMSLGSIFQAKKKKLSNGGSKPLSNLKKEELQGEDGVGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPK+ SGS PKG KVKKEERFN+ DD +D+ P+KKSS AKRD E KKKKKVKEEEKSK+S
Sbjct: 61  SPKMGSGSVPKGTKVKKEERFNSSDDDYDETPSKKSSAAKRDMEPKKKKKVKEEEKSKTS 120

Query: 121 K-ELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLL 180
           K + ES  K+R++KKVYDLPGQKRDPPEERDPLRIFYE+LHKQLPHSEMAQFWMME GLL
Sbjct: 121 KAKQESQKKERREKKVYDLPGQKRDPPEERDPLRIFYETLHKQLPHSEMAQFWMMESGLL 180

Query: 181 SKEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSK 240
           SKEEAKKVFEKKQKKAPLQKLSSP+K V+AVKSVTKTAIVKKTVQSSPLSSN+ T VDSK
Sbjct: 181 SKEEAKKVFEKKQKKAPLQKLSSPVKAVTAVKSVTKTAIVKKTVQSSPLSSNKKTTVDSK 240

Query: 241 VVTKLSKKRKSKDDSSEDESDDYFI-SQSIKKKQRAA 275
           V+TK SKKRKSKD+SSEDESDD FI S+S+KKK RAA
Sbjct: 241 VMTKQSKKRKSKDESSEDESDDDFIISRSVKKKPRAA 277

[Close]

BLAST of CsGy3G040990 vs. ExPASy TrEMBL
Match: A0A0A0LGI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872700 PE=4 SV=1)

HSP 1 Score: 493 bits (1270), Expect = 2.64e-175
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK
Sbjct: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS
Sbjct: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120

Query: 121 KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS 180
           KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS
Sbjct: 121 KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS 180

Query: 181 KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV 240
           KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV
Sbjct: 181 KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV 240

Query: 241 VTKLSKKRKSKDDSSEDESDDYFISQSIKKKQRAA 275
           VTKLSKKRKSKDDSSEDESDDYFISQSIKKKQRAA
Sbjct: 241 VTKLSKKRKSKDDSSEDESDDYFISQSIKKKQRAA 275

[Close]

BLAST of CsGy3G040990 vs. ExPASy TrEMBL
Match: A0A5D3E5S8 (Golgin subfamily A member 6-like protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008030 PE=4 SV=1)

HSP 1 Score: 451 bits (1161), Expect = 1.11e-158
Identity = 257/276 (93.12%), Postives = 265/276 (96.01%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEEL GVDGLGK
Sbjct: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELLGVDGLGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPKIDSGSAPKG KVKKEERFN+V+D FD+KPAKKSS AKRDTELKKKKKVKEEEKSKSS
Sbjct: 61  SPKIDSGSAPKGSKVKKEERFNSVNDDFDEKPAKKSSAAKRDTELKKKKKVKEEEKSKSS 120

Query: 121 KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS 180
           KELESL K+RKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMME GLLS
Sbjct: 121 KELESLKKERKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMESGLLS 180

Query: 181 KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV 240
           KEEAK+VFEKKQKKAPLQKLSSPMK VSAVKSVTKTA+VKKTVQSSPLSSNRTTKVDSKV
Sbjct: 181 KEEAKEVFEKKQKKAPLQKLSSPMKTVSAVKSVTKTAVVKKTVQSSPLSSNRTTKVDSKV 240

Query: 241 VTKLSKKRKSKDDSSEDESDD-YFISQSIKKKQRAA 275
           V K SKKRKSKDDSSED+SDD +FISQSIKKK RAA
Sbjct: 241 VMKSSKKRKSKDDSSEDDSDDDFFISQSIKKKARAA 276

[Close]

BLAST of CsGy3G040990 vs. ExPASy TrEMBL
Match: A0A1S3CRI7 (uncharacterized protein LOC103503875 OS=Cucumis melo OX=3656 GN=LOC103503875 PE=4 SV=1)

HSP 1 Score: 451 bits (1161), Expect = 1.11e-158
Identity = 257/276 (93.12%), Postives = 265/276 (96.01%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEEL GVDGLGK
Sbjct: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELLGVDGLGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPKIDSGSAPKG KVKKEERFN+V+D FD+KPAKKSS AKRDTELKKKKKVKEEEKSKSS
Sbjct: 61  SPKIDSGSAPKGSKVKKEERFNSVNDDFDEKPAKKSSAAKRDTELKKKKKVKEEEKSKSS 120

Query: 121 KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS 180
           KELESL K+RKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMME GLLS
Sbjct: 121 KELESLKKERKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMESGLLS 180

Query: 181 KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV 240
           KEEAK+VFEKKQKKAPLQKLSSPMK VSAVKSVTKTA+VKKTVQSSPLSSNRTTKVDSKV
Sbjct: 181 KEEAKEVFEKKQKKAPLQKLSSPMKTVSAVKSVTKTAVVKKTVQSSPLSSNRTTKVDSKV 240

Query: 241 VTKLSKKRKSKDDSSEDESDD-YFISQSIKKKQRAA 275
           V K SKKRKSKDDSSED+SDD +FISQSIKKK RAA
Sbjct: 241 VMKSSKKRKSKDDSSEDDSDDDFFISQSIKKKARAA 276

[Close]

BLAST of CsGy3G040990 vs. ExPASy TrEMBL
Match: A0A5A7V6S5 (Golgin subfamily A member 6-like protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001110 PE=4 SV=1)

HSP 1 Score: 416 bits (1068), Expect = 8.43e-145
Identity = 239/276 (86.59%), Postives = 247/276 (89.49%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEEL GVDGLGK
Sbjct: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELLGVDGLGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPKIDSGSAPKG KVKKEERFN+V+D FD+KPAKKSS AKRDTEL               
Sbjct: 61  SPKIDSGSAPKGSKVKKEERFNSVNDDFDEKPAKKSSAAKRDTEL--------------- 120

Query: 121 KELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLS 180
              ESL K+RKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMME GLLS
Sbjct: 121 ---ESLKKERKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMESGLLS 180

Query: 181 KEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSKV 240
           KEEAK+VFEKKQKKAPLQKLSSPMK VSAVKSVTKTA+VKKTVQSSPLSSNRTTKVDSKV
Sbjct: 181 KEEAKEVFEKKQKKAPLQKLSSPMKTVSAVKSVTKTAVVKKTVQSSPLSSNRTTKVDSKV 240

Query: 241 VTKLSKKRKSKDDSSEDESDD-YFISQSIKKKQRAA 275
           V K SKKRKSKDDSSED+SDD +FISQSIKKK RAA
Sbjct: 241 VMKSSKKRKSKDDSSEDDSDDDFFISQSIKKKARAA 258

[Close]

BLAST of CsGy3G040990 vs. ExPASy TrEMBL
Match: A0A6J1CXC1 (transcriptional regulator ATRX homolog OS=Momordica charantia OX=3673 GN=LOC111015025 PE=4 SV=1)

HSP 1 Score: 378 bits (970), Expect = 1.36e-129
Identity = 219/277 (79.06%), Postives = 246/277 (88.81%), Query Frame = 0


Query: 1   MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGK 60
           MSS+DQKP+KK+K ELD+ +DGMSLG++ Q K+KKL N GSK LS  KKEELQG DG+GK
Sbjct: 1   MSSEDQKPIKKSKVELDEMEDGMSLGSIFQAKKKKLSNGGSKPLSNLKKEELQGEDGVGK 60

Query: 61  SPKIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSS 120
           SPK+ SGS PKG KVKKEERFN+ DD +D+ P+KKSS AKRD E KKKKKVKEEEKSK+S
Sbjct: 61  SPKMGSGSVPKGTKVKKEERFNSSDDDYDETPSKKSSAAKRDMEPKKKKKVKEEEKSKTS 120

Query: 121 K-ELESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLL 180
           K + ES  K+R++KKVYDLPGQKRDPPEERDPLRIFYE+LHKQLPHSEMAQFWMME GLL
Sbjct: 121 KAKQESQKKERREKKVYDLPGQKRDPPEERDPLRIFYETLHKQLPHSEMAQFWMMESGLL 180

Query: 181 SKEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRTTKVDSK 240
           SKEEAKKVFEKKQKKAPLQKLSSP+K V+AVKSVTKTAIVKKTVQSSPLSSN+ T VDSK
Sbjct: 181 SKEEAKKVFEKKQKKAPLQKLSSPVKAVTAVKSVTKTAIVKKTVQSSPLSSNKKTTVDSK 240

Query: 241 VVTKLSKKRKSKDDSSEDESDDYFI-SQSIKKKQRAA 275
           V+TK SKKRKSKD+SSEDESDD FI S+S+KKK RAA
Sbjct: 241 VMTKQSKKRKSKDESSEDESDDDFIISRSVKKKPRAA 277

[Close]

BLAST of CsGy3G040990 vs. TAIR 10
Match: AT1G19990.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). )

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-30
Identity = 117/279 (41.94%), Postives = 160/279 (57.35%), Query Frame = 0


Query: 3   SQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELQGVDGLGKSP 62
           S+D K +K  +   +  +D  SL +  ++K     N GSK L K + ++    D     P
Sbjct: 4   SEDVKAMKMKE---EAEEDNKSLSSFAKKKPTNGNNAGSKKLKKEENDD----DDDDNKP 63

Query: 63  KIDSGSAPKGFKVKKEERFNTVDDGFDDKPAKKSSVAKRDTELKKKKKVKEEEKSKSSKE 122
              S S  +   VKK+E          DK  +K  V+KR++ +   K+ K+ EK      
Sbjct: 64  IKSSVSGSRAKPVKKKEEI--------DKDDEKKPVSKRNSSVGVSKENKKPEK------ 123

Query: 123 LESLIKDRKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMEYGLLSKE 182
            E  +K ++++KVYDLPGQKR+ P+ERDPLRIFYESL+KQ+P S+MAQ W+ME GLL  E
Sbjct: 124 -EEEVKKKRERKVYDLPGQKREQPDERDPLRIFYESLYKQIPTSDMAQIWLMESGLLPAE 183

Query: 183 EAKKVFEKKQKKAPLQKLSSPMK-----PVSAVKSVTKTAIVKKTVQSSPLS--SNRTTK 242
           +AKKV EKK +K    KLSSP+K     P S  KSVT   + KK VQ SP    SN+   
Sbjct: 184 KAKKVLEKKLQKG--GKLSSPVKSAASTPRSNSKSVT---VKKKEVQKSPSEALSNKKKG 243

Query: 243 VDSKVVTKLSKKRKSKDDSSEDESDDYFISQSIKKKQRA 275
            DSK  TK  K++K+ DD   D+SDD F++  + KK RA
Sbjct: 244 NDSKPTTK--KRKKNSDD---DDSDDDFLASRVSKKARA 250

[Close]

BLAST of CsGy3G040990 vs. TAIR 10
Match: AT5G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 9.9e-22
Identity = 68/157 (43.31%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 116 KSKSSKELESLIKD--RKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWM 175
           K+K++    SL+K   +++KKVY L GQK DPPEER+PLRIFYESL KQ+P SEMA+FW+
Sbjct: 100 KAKTTSATVSLVKGKAKREKKVYSLAGQKFDPPEEREPLRIFYESLSKQIPGSEMAEFWL 159

Query: 176 MEYGLLSKEEAKKVFEKKQKKAPLQKLSSPMKPVSAVKSVTKTAIVKKTVQSSPLSSNRT 235
           ME+G+LS E+AK+ FEKKQ+K    ++ +P K      S        K   S   S+++ 
Sbjct: 160 MEHGMLSPEKAKRAFEKKQRKMKQIRMGTPSKSAPTFSS--------KAESSQRTSASKN 219

Query: 236 TKVDSKVVTKLSKKRKSKDDSSEDESDDYFISQSIKK 271
             +D++      KK+K  DD  +D+ DD+ +S   +K
Sbjct: 220 NGLDAR------KKKKVVDD-DDDDDDDFILSHKRRK 241

The following BLAST results are available for this feature:

BLAST of CsGy3G040990 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G040990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652451.1	5.45e-175	100.00	uncharacterized protein LOC101214860 [Cucumis sativus] >KGN60039.1 hypothetical ...	[more]
XP_008466483.1	2.28e-158	93.12	PREDICTED: uncharacterized protein LOC103503875 [Cucumis melo] >TYK31487.1 golgi...	[more]
KAA0063288.1	1.74e-144	86.59	golgin subfamily A member 6-like protein 22 [Cucumis melo var. makuwa]	[more]
XP_038897144.1	1.27e-139	84.48	uncharacterized protein LOC120085300 [Benincasa hispida]	[more]
XP_022145662.1	2.81e-129	79.06	transcriptional regulator ATRX homolog [Momordica charantia]	[more]

BLAST of CsGy3G040990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGI1	2.64e-175	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872700 PE=4 SV=1	[more]
A0A5D3E5S8	1.11e-158	93.12	Golgin subfamily A member 6-like protein 22 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CRI7	1.11e-158	93.12	uncharacterized protein LOC103503875 OS=Cucumis melo OX=3656 GN=LOC103503875 PE=...	[more]
A0A5A7V6S5	8.43e-145	86.59	Golgin subfamily A member 6-like protein 22 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1CXC1	1.36e-129	79.06	transcriptional regulator ATRX homolog OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of CsGy3G040990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19990.1	2.0e-30	41.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G11600.1	9.9e-22	43.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..238
None	No IPR available	PANTHER	PTHR33828:SF2	NUCLEOLIN	coord: 1..274
None	No IPR available	PANTHER	PTHR33828	OS05G0596200 PROTEIN	coord: 1..274

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G040990.1	CsGy3G040990.1	mRNA