CsGy3G039310 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G039310
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Dynein light chain
Location	Gy14Chr3: 37026097 .. 37027060 (+)
RNA-Seq Expression	CsGy3G039310
Synteny	CsGy3G039310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTATCCTAAAACTCTCTATATAACTAAACTTGTGTTCCCTTCAAGTCCTCCGCCCACAGCCACCGTAAGCTCCCGTCGTGTGTGGTGATATTAATATAATTTATTATTTTAGCCATGTTAGAAGGGAAAGCAATCGTGGGAGAAACGGATATGTTGGAGGCCATGCAACAGGACGCTTTGAACCTTGCAGCTAAGGCACTTGATAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGTACAACTTGATCTATTTTTAAAACAATTTCTCCATTACCCAATAATTTGTAATAAGATTGAACTAATATGTGCAATTTGTATGGTTATGTGTAAATTTGAGGGCCTAAATTTAATACTTGTATAAGTTTAAGGAACCGATCGATTTTTACTATTAAAAAATTGAGGTATAATTTAAGAGTAGTATTGAATATCTAAGTTATCATATTTTAATTAATAAATTTTTATATTAGTGTATGCATGAGAACTAAGGGTTGAATTATGAGATAAACATTTAATTTGTTATATGAAAGGAAATGGGTAATAGTAGCTATGATTGATGTGAAATTGTAATGAAAAAATGAGCAGGAATTTGACAGAATACATGGAGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTACTCTTTAGGGGTTCTGCTGCCTCACAACAACAACAACAATTTCCTGAACCTACTCATCACTTTTCTCTTATGGACAATACTCTCAAACCATGACACACTTCTATTACACTTTTCTTCATTTCTCTCTTCTCTAGATCTTCTCTTCTTATATCAATGTCATATCCCCAAATTTAAATCTTTATCATTAATTCCCGCTATATCTGTATCTAAGTGCTTTTCTTTTTCTTAATCATTCTTCCTCAA

mRNA sequence

GCTTATCCTAAAACTCTCTATATAACTAAACTTGTGTTCCCTTCAAGTCCTCCGCCCACAGCCACCGTAAGCTCCCGTCGTGTGTGGTGATATTAATATAATTTATTATTTTAGCCATGTTAGAAGGGAAAGCAATCGTGGGAGAAACGGATATGTTGGAGGCCATGCAACAGGACGCTTTGAACCTTGCAGCTAAGGCACTTGATAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGAATACATGGAGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTACTCTTTAGGGGTTCTGCTGCCTCACAACAACAACAACAATTTCCTGAACCTACTCATCACTTTTCTCTTATGGACAATACTCTCAAACCATGACACACTTCTATTACACTTTTCTTCATTTCTCTCTTCTCTAGATCTTCTCTTCTTATATCAATGTCATATCCCCAAATTTAAATCTTTATCATTAATTCCCGCTATATCTGTATCTAAGTGCTTTTCTTTTTCTTAATCATTCTTCCTCAA

Coding sequence (CDS)

ATGTTAGAAGGGAAAGCAATCGTGGGAGAAACGGATATGTTGGAGGCCATGCAACAGGACGCTTTGAACCTTGCAGCTAAGGCACTTGATAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGAATACATGGAGGAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTACTCTTTAGGGGTTCTGCTGCCTCACAACAACAACAACAATTTCCTGAACCTACTCATCACTTTTCTCTTATGGACAATACTCTCAAACCATGA

Protein sequence

MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP*

Homology

[Close]

BLAST of CsGy3G039310 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          M E KA++   DM E MQQDA++ A +AL+ F++ +  DIA +IKKEFD+ +   W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of CsGy3G039310 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          M + KA++   DM E MQQDA++ A +AL+ +++ +  DIA FIKKEFD+ +   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of CsGy3G039310 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-16
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          M++ KA++   DM + MQQDA++ A +AL+ +++ +  DIA +IKKEFD+ +   W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of CsGy3G039310 vs. ExPASy Swiss-Prot
Match: Q39580 (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-16
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 5  KAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDF 64
          KA++   DM E MQ DA++ A +AL+ +++ +  DIA +IKKEFDR H   W CIVG +F
Sbjct: 7  KAVIKNADMSEEMQADAVDCATQALEKYNIEK--DIAAYIKKEFDRKHNPTWHCIVGRNF 66

Query: 65 GSFVTHCFGCFIYFCVGSLAILLFR 90
          GS+VTH    FIYF +G +AILLF+
Sbjct: 67 GSYVTHETKHFIYFYLGQVAILLFK 89

[Close]

BLAST of CsGy3G039310 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-16
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          M + KA++   DM E MQQDA++ A +AL+ +++ +  DIA +IKKEFD+ +   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: XP_004146843.1 (dynein light chain 2, cytoplasmic [Cucumis sativus] >KAE8651306.1 hypothetical protein Csa_000829 [Cucumis sativus])

HSP 1 Score: 240 bits (612), Expect = 6.60e-80
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 116
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 116

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: XP_008454627.1 (PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA0036763.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa] >TYJ95832.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (542), Expect = 3.15e-69
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDR +GGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEP-THHFSLMDNTLKP 116
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAASQ+QQ  P+P THHFSL+D TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 116

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: XP_038899068.1 (dynein light chain 2, cytoplasmic [Benincasa hispida])

HSP 1 Score: 200 bits (509), Expect = 3.08e-64
Identity = 101/115 (87.83%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAI+GETDML+AMQQDALNLAAKALDSFDVTEATDIARFIKKEFD+I+GGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLQAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDKIYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLK 115
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS+++QQ P+PT  FS+M+ TLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQQ-PQPTQ-FSVME-TLK 112

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: KAG6607846.1 (hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (481), Expect = 5.56e-60
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAIVGETDML+AMQQDAL+LAAKALD FDVTEATDIARFIKKEFDR HGGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTH 105
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A QQ    P PTH
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---PHPTH 102

[Close]

BLAST of CsGy3G039310 vs. NCBI nr
Match: XP_022941140.1 (dynein light chain 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 189 bits (481), Expect = 5.56e-60
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAIVGETDML+AMQQDAL+LAAKALD FDVTEATDIARFIKKEFDR HGGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTH 105
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A QQ    P PTH
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---PHPTH 102

[Close]

BLAST of CsGy3G039310 vs. ExPASy TrEMBL
Match: A0A5A7T1H5 (Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001190 PE=3 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.53e-69
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDR +GGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEP-THHFSLMDNTLKP 116
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAASQ+QQ  P+P THHFSL+D TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 116

[Close]

BLAST of CsGy3G039310 vs. ExPASy TrEMBL
Match: A0A1S3BZU7 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.53e-69
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDR +GGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEP-THHFSLMDNTLKP 116
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAASQ+QQ  P+P THHFSL+D TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 116

[Close]

BLAST of CsGy3G039310 vs. ExPASy TrEMBL
Match: A0A0A0LIK5 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G851720 PE=3 SV=1)

HSP 1 Score: 204 bits (520), Expect = 5.81e-66
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 20  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC 79
           DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC
Sbjct: 36  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC 95

Query: 80  VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 116
           VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP
Sbjct: 96  VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 132

[Close]

BLAST of CsGy3G039310 vs. ExPASy TrEMBL
Match: A0A6J1J2G7 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1)

HSP 1 Score: 189 bits (481), Expect = 2.69e-60
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAIVGETDML+AMQQDAL+LAAKALD FDVTEATDIARFIKKEFDR HGGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTH 105
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A QQ    P PTH
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---PHPTH 102

[Close]

BLAST of CsGy3G039310 vs. ExPASy TrEMBL
Match: A0A6J1FSQ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1)

HSP 1 Score: 189 bits (481), Expect = 2.69e-60
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
           MLEGKAIVGETDML+AMQQDAL+LAAKALD FDVTEATDIARFIKKEFDR HGGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTH 105
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A QQ    P PTH
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---PHPTH 102

[Close]

BLAST of CsGy3G039310 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-35
Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          MLEGKA++G+TDM + M++DAL+LA+KALD FDVTE T IARFIKKEFDR +G GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT FGSFVTHC GCFI+F VGSL ILLF+GS
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGS 91

[Close]

BLAST of CsGy3G039310 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-23
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          MLEGKA V ETDM   MQ  A+ +A+++LD FDV ++  IA  IKKEFD  +G GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of CsGy3G039310 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 98.6 bits (244), Expect = 3.5e-21
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60
          MLEGKA+V ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  +G GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA 93
          G++FG F TH  G FIYF + +L  L+F+G++
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAS 92

[Close]

BLAST of CsGy3G039310 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-15
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 5   KAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDF 64
           +A++   DM + MQ++A+ +A  A + + V +  DIA  IKKEFD+ HG  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCFGCFIYFCVGSLAILLFR 90
           GS+VTH    F+YF +   A+LLF+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

[Close]

BLAST of CsGy3G039310 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-14
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 12  DMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHC 71
           DM   MQ  A   A   LDS +   +  +A  +KKEFD+ +G  W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  FGCFIYFCVGSLAILLFR 90
            GCFIYF +  L +LLF+
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

The following BLAST results are available for this feature:

BLAST of CsGy3G039310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	6.7e-17	50.56	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	6.7e-17	50.56	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	1.5e-16	48.31	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q39580	1.5e-16	51.76	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
Q24117	1.5e-16	49.44	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]

BLAST of CsGy3G039310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146843.1	6.60e-80	100.00	dynein light chain 2, cytoplasmic [Cucumis sativus] >KAE8651306.1 hypothetical p...	[more]
XP_008454627.1	3.15e-69	89.74	PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA003676...	[more]
XP_038899068.1	3.08e-64	87.83	dynein light chain 2, cytoplasmic [Benincasa hispida]	[more]
KAG6607846.1	5.56e-60	89.52	hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022941140.1	5.56e-60	89.52	dynein light chain 2, cytoplasmic-like [Cucurbita moschata]	[more]

BLAST of CsGy3G039310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1H5	1.53e-69	89.74	Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G0...	[more]
A0A1S3BZU7	1.53e-69	89.74	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1	[more]
A0A0A0LIK5	5.81e-66	100.00	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G851720 PE=3 SV=1	[more]
A0A6J1J2G7	2.69e-60	89.52	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1	[more]
A0A6J1FSQ1	2.69e-60	89.52	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1	[more]

BLAST of CsGy3G039310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27360.1	1.5e-35	75.82	Dynein light chain type 1 family protein	[more]
AT3G16120.1	4.9e-23	56.04	Dynein light chain type 1 family protein	[more]
AT1G52240.2	3.5e-21	52.17	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G15930.1	3.8e-15	44.71	Dynein light chain type 1 family protein	[more]
AT5G20110.1	4.2e-14	48.72	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 2.9E-44 score: 163.1
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 6..89 e-value: 2.9E-31 score: 107.7
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..97
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.4E-30 score: 107.1
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF70	DYNEIN LIGHT CHAIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G039310.1	CsGy3G039310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding